Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07648
- Subject:
- NM_001190852.1
- Aligned Length:
- 2186
- Identities:
- 1267
- Gaps:
- 742
Alignment
Query 1 ATGAGCAACTACAGTGTGTCACTGGTTGGCCCAGCTCCTTGGGGTTTCCGGCTGCAGGGCGGTAAGGATTTCAA 74
|||||||||||||||||||||.||||.||||||||||||||||||||||||||.||.||.||.|||||||||||
Sbjct 1 ATGAGCAACTACAGTGTGTCATTGGTCGGCCCAGCTCCTTGGGGTTTCCGGCTCCAAGGTGGCAAGGATTTCAA 74
Query 75 CATGCCTCTGACAATCTCTAGTCTAAAAGATGGCGGCAAGGCAGCCCAGGCAAATGTAAGAATAGGCGATGTGG 148
||||||||||||||||||||||||.||.|||||.|||||||||.|.||||||.||||.||||||||.||.||||
Sbjct 75 CATGCCTCTGACAATCTCTAGTCTGAAGGATGGTGGCAAGGCATCTCAGGCACATGTCAGAATAGGGGACGTGG 148
Query 149 TTCTCAGCATTGATGGAATAAATGCACAAGGAATGACTCATCTTGAAGCCCAGAATAAGATTAAGGGTTGTACA 222
||||||||||.|||||.||.|.||||||.||||||||.|||||||||||||||||.||||||||||.||||||.
Sbjct 149 TTCTCAGCATCGATGGGATCAGTGCACAGGGAATGACGCATCTTGAAGCCCAGAACAAGATTAAGGCTTGTACG 222
Query 223 GGCTCTTTGAATATGACTCTGCAAAGAGCATCTGCTGCACCCAAGCCTGAGCCGGTTCCTGTTCAAAAGGGAGA 296
|||||.||||||||||||||.||||||||.||.||||||.|||||..||||||||||
Sbjct 223 GGCTCCTTGAATATGACTCTACAAAGAGCTTCAGCTGCAGCCAAGAGTGAGCCGGTT----------------- 279
Query 297 ACCTAAAGAAGTAGTTAAACCTGTGCCCATTACATCTCCTGCTGTGTCCAAAGTCACTTCCACAAACAACATGG 370
||| |||||
Sbjct 280 ------------------------------------TCC------GTCCA------------------------ 287
Query 371 CCTACAATAAGGCACCACGGCCTTTTGGTTCTGTGTCTTCACCAAAAGTCACATCCATCCCATCACCATCGTCT 444
Sbjct 288 -------------------------------------------------------------------------- 287
Query 445 GCCTTCACCCCAGCCCATGCGACCACCTCATCACATGCTTCCCCTTCACCCGTGGCTGCCGTCACTCCTCCCCT 518
Sbjct 288 -------------------------------------------------------------------------- 287
Query 519 GTTCGCTGCATCTGGACTGCATGCTAATGCCAATCTTAGTGCTGACCAGTCTCCATCTGCACTGAGCGCTGGTA 592
Sbjct 288 -------------------------------------------------------------------------- 287
Query 593 AAACTGCAGTTAATGTCCCACGGCAGCCCACAGTCACCAGCGTGTGTTCCGAGACTTCTCAGGAGCTAGCAGAG 666
|.|||||||||||||||||||||||||||||.||.|||||||||||||||||
Sbjct 288 ----------------------GAAGCCCACAGTCACCAGCGTGTGTTCCGAGTCTGCTCAGGAGCTAGCAGAG 339
Query 667 GGACAGAGAAGAGGATCCCAGGGTGACAGTAAACAGCAAAATGGCCCACCAAGAAAACACATTGTGGAGCGCTA 740
||||||||||||||||||||||||||||.|||.|||||||||||||||||||||||||||||||||||||||.|
Sbjct 340 GGACAGAGAAGAGGATCCCAGGGTGACATTAAGCAGCAAAATGGCCCACCAAGAAAACACATTGTGGAGCGCAA 413
Query 741 TACAGAGTTTTATCATGTACCCACTCACAGTGATGCCAGCAAGAAGAGACTGATTGAGGATACTGAAGACTGGC 814
.||.|||||||||||..||||||||||||||||||||||||||||..|.|||||||||||.|||||.|||||||
Sbjct 414 CACGGAGTTTTATCACATACCCACTCACAGTGATGCCAGCAAGAAACGGCTGATTGAGGACACTGAGGACTGGC 487
Query 815 GTCCAAGGACTGGAACAACTCAGTCTCGCTCTTTCCGAATCCTTGCCCAGATCACTGGGACTGAACATTTGAAA 888
|.||..||||||||||.|||||||||||.||||||||.||||||||||||||||||||||||||.|||.|||.|
Sbjct 488 GCCCCCGGACTGGAACGACTCAGTCTCGTTCTTTCCGGATCCTTGCCCAGATCACTGGGACTGAGCATCTGACA 561
Query 889 GAATCTGAAGCCGATAATACAAAGAAGGCAAA---TAAC---TCTCAGGA-----GCCTT-------------- 937
|||||||||...||.|||||.||||||||||| |.|| ||||.||| .||||
Sbjct 562 GAATCTGAAAATGACAATACGAAGAAGGCAAAGTTTTACAGTTCTCTGGAAGACCCCCTTAAGAACGGACCACA 635
Query 938 -----------CTCCGCAG------------------------------------------------------- 945
||||.|||
Sbjct 636 CCCACCTGCAGCTCCCCAGCTGTTAAAAGTTCATAGTCAAGTAGCCATAGTTTCTAAGGAAGCAGCCACTTACT 709
Query 946 --------------------------------------TTGG----------------------CTTC------ 953
|||| ||||
Sbjct 710 CTAGTGTAAGCAGGTCTACAAGAACTGTAGAAGGTGCTTTGGAAGGCTTTGGAAACTTTCCTGCCTTCTCCCCT 783
Query 954 ----CTCGGTA-------------------------GCTTCCAC-------------------------AC--G 971
||.|.|| |||.|||| || |
Sbjct 784 CCTACTAGATACAGTGCTGTAGTCGTCAGTGATGCGGCTGCCACTGTGTCTGCTGCTCTCGCTGCGAAAACCAG 857
Query 972 GAGCAT--GCCC-GAGAGC------------CTGGA------------CAG-------CCCAA----------- 1000
|..|.| |||| ||.|.| ||||| ||| |||||
Sbjct 858 GCTCTTCGGCCCTGAAAACTCCCAGTCTCTTCTGGATGCACTGTGCATCAGCACTGTCCCCAAGCCTCTAGCTC 931
Query 1001 ---------------CCTCTG---------------------------------GCAG-----ACCAGGGG--T 1019
|||||| |||| .|||||.| |
Sbjct 932 TTTCCTGTCTTCAGTCCTCTGAGGAGTCGAGTGGCTCTGTCCACGTTAAGAAGAGCAGTAGCACCCAGGAGCCT 1005
Query 1020 T-------ACCAGCCTCA----------CAACT----------------------------------------- 1035
| |||.||.||| ||.||
Sbjct 1006 TCTCAGCAACCGGCGTCATCTGGAGCTTCACCTCTGAGCGCGTCTGAGGGCCCCGAGAGCCCAGGTTCCAGCAG 1079
Query 1036 -------------------------GCAGCTGCCTTCAAGCCTGTAGGATCCACTGGCGTCATCAAGTCACCAA 1084
||.|||||.||||||||||||||||||||..||| ||||||||||.|
Sbjct 1080 GCCCTCGGTGGCTGGCCTCCGCTCCGCTGCTGCTTTCAAGCCTGTAGGATCCACCAGCG---TCAAGTCACCTA 1150
Query 1085 GCTGGCAACGGCCAAACCAAGGAGTACCTTCCACTGGAAGAATCTCAAACAGCGCTGCTTACTCAGGATCAGTG 1158
|||||||.||.||||||||||.||.||||||.|||||.|||||.|||||||..||...||..|||||..|||.|
Sbjct 1151 GCTGGCAGCGTCCAAACCAAGCAGCACCTTCTACTGGGAGAATTTCAAACAATGCACGTTCTTCAGGTACAGGG 1224
Query 1159 GCACCAGCCAACTCAG-CTTTGGGACAAACCCAGCCAAGTGACCAGGACACTTTAGTGCAAAGAGCTGAGCACA 1231
|| | ||.||||.|...||||||||||||||||.|||||..|.|||||.|||||.||.||||
Sbjct 1225 GC-------------GTCTGTGGGGCCTCCCCAGCCAAGTGACCAAGACACACTTGTGCAGAGAGCGGAACACA 1285
Query 1232 TTCCAGCAGGGAAACGAACTCCGATGTGCGCCCATTGTAACCAGGTCATCAGAGGACC-ATTCTTAGTGGCACT 1304
|||||||.||.||.||.||.||.|||||.|||||.||.|||||.||.|||||.||||| .||||| |||||.||
Sbjct 1286 TTCCAGCGGGCAAGCGGACCCCCATGTGTGCCCACTGCAACCAAGTTATCAGGGGACCTTTTCTT-GTGGCTCT 1358
Query 1305 GGGGAAATCTTGGCACCCAGAAGAATTCAACTGCGCTCACTGCAAAAATACAATGGCCTACATTGGATTTGTAG 1378
||||||.||.|||||.|||||||||||.|||||.|||||.||||||||.||||||||||||||.||.|||||||
Sbjct 1359 GGGGAAGTCCTGGCATCCAGAAGAATTTAACTGTGCTCATTGCAAAAACACAATGGCCTACATAGGCTTTGTAG 1432
Query 1379 AGGAGAAAGGAGCCCTGTATTGTGAGCTGTGCTATGAGAAATTCTTTGCCCCTGAATGTGGTCGATGCCAAAGG 1452
|||||||.|||||.|||||.||||||||.|||||||||||.||||||||.|||||||||||.||.|||||||||
Sbjct 1433 AGGAGAAGGGAGCACTGTACTGTGAGCTATGCTATGAGAAGTTCTTTGCTCCTGAATGTGGCCGGTGCCAAAGG 1506
Query 1453 AAGATCCTTGGAGAAGTCATCAATGCGTTGAAACAAACTTGGCATGTTTCCTGTTTTGTGTGTGTAGCCTGTGG 1526
||||||||||||||||||||||||||.|||||.||.||.||||||||.|||||||||||||||||.||||||||
Sbjct 1507 AAGATCCTTGGAGAAGTCATCAATGCTTTGAAGCAGACCTGGCATGTGTCCTGTTTTGTGTGTGTGGCCTGTGG 1580
Query 1527 AAAGCCCATTCGGAACAATGTTTTTCACTTGGAGGATGGTGAACCCTACTGTGAGACTGATTATTATGCCCTCT 1600
|||.||||||||.||.||||||||.||||||||.|||||.||.||||||||||||||.||.||.||.|||||.|
Sbjct 1581 AAAACCCATTCGTAATAATGTTTTCCACTTGGAAGATGGCGAGCCCTACTGTGAGACAGACTACTACGCCCTTT 1654
Query 1601 TTGGTACTATATGCCATGGATGTGAATTTCCCATAGAAGCTGGTGACATGTTCCTGGAAGCTCTGGGCTACACC 1674
||||.||.|||||.|.||||||||||||.||||||||.|||||||||||||||||||||||||||||.|||||.
Sbjct 1655 TTGGAACAATATGTCGTGGATGTGAATTCCCCATAGAGGCTGGTGACATGTTCCTGGAAGCTCTGGGATACACT 1728
Query 1675 TGGCATGACACTTGCTTTGTATGCTCAGTGTGTTGTGAAAGTTTGGAAGGTCAGACCTTTTTCTCCAAGAAGGA 1748
||||||||.|||||||||||.|||||.|||||||||||||||||||||||.|||||.|||||||||||||||||
Sbjct 1729 TGGCATGATACTTGCTTTGTGTGCTCTGTGTGTTGTGAAAGTTTGGAAGGGCAGACATTTTTCTCCAAGAAGGA 1802
Query 1749 CAAGCCCCTGTGTAAGAAACATGCTCATTCTGTGAATTTT 1788
||||||.||.||.||.||||||||||||||||||||||||
Sbjct 1803 CAAGCCACTTTGCAAAAAACATGCTCATTCTGTGAATTTT 1842
