Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_07648
Subject:
NM_001190854.1
Aligned Length:
1790
Identities:
1243
Gaps:
346

Alignment

Query    1  ATGAGCAACTACAGTGTGTCACTGGTTGGCCCAGCTCCTTGGGGTTTCCGGCTGCAGGGCGGTAAGGATTTCAA  74
            |||||||||||||||||||||.||||.||||||||||||||||||||||||||.||.||.||.|||||||||||
Sbjct    1  ATGAGCAACTACAGTGTGTCATTGGTCGGCCCAGCTCCTTGGGGTTTCCGGCTCCAAGGTGGCAAGGATTTCAA  74

Query   75  CATGCCTCTGACAATCTCTAGTCTAAAAGATGGCGGCAAGGCAGCCCAGGCAAATGTAAGAATAGGCGATGTGG  148
            ||||||||||||||||||||||||.||.|||||.|||||||||.|.||||||.||||.||||||||.||.||||
Sbjct   75  CATGCCTCTGACAATCTCTAGTCTGAAGGATGGTGGCAAGGCATCTCAGGCACATGTCAGAATAGGGGACGTGG  148

Query  149  TTCTCAGCATTGATGGAATAAATGCACAAGGAATGACTCATCTTGAAGCCCAGAATAAGATTAAGGGTTGTACA  222
            ||||||||||.|||||.||.|.||||||.||||||||.|||||||||||||||||.||||||||||.||||||.
Sbjct  149  TTCTCAGCATCGATGGGATCAGTGCACAGGGAATGACGCATCTTGAAGCCCAGAACAAGATTAAGGCTTGTACG  222

Query  223  GGCTCTTTGAATATGACTCTGCAAAGAGCATCTGCTGCACCCAAGCCTGAGCCGGTTCCTGTTCAAAAGGGAGA  296
            |||||.||||||||||||||.||||||||.||.||||||.|||||..||||||||||                 
Sbjct  223  GGCTCCTTGAATATGACTCTACAAAGAGCTTCAGCTGCAGCCAAGAGTGAGCCGGTT-----------------  279

Query  297  ACCTAAAGAAGTAGTTAAACCTGTGCCCATTACATCTCCTGCTGTGTCCAAAGTCACTTCCACAAACAACATGG  370
                                                |||      |||||                        
Sbjct  280  ------------------------------------TCC------GTCCA------------------------  287

Query  371  CCTACAATAAGGCACCACGGCCTTTTGGTTCTGTGTCTTCACCAAAAGTCACATCCATCCCATCACCATCGTCT  444
                                                                                      
Sbjct  288  --------------------------------------------------------------------------  287

Query  445  GCCTTCACCCCAGCCCATGCGACCACCTCATCACATGCTTCCCCTTCACCCGTGGCTGCCGTCACTCCTCCCCT  518
                                                                                      
Sbjct  288  --------------------------------------------------------------------------  287

Query  519  GTTCGCTGCATCTGGACTGCATGCTAATGCCAATCTTAGTGCTGACCAGTCTCCATCTGCACTGAGCGCTGGTA  592
                                                                                      
Sbjct  288  --------------------------------------------------------------------------  287

Query  593  AAACTGCAGTTAATGTCCCACGGCAGCCCACAGTCACCAGCGTGTGTTCCGAGACTTCTCAGGAGCTAGCAGAG  666
                                  |.|||||||||||||||||||||||||||||.||.|||||||||||||||||
Sbjct  288  ----------------------GAAGCCCACAGTCACCAGCGTGTGTTCCGAGTCTGCTCAGGAGCTAGCAGAG  339

Query  667  GGACAGAGAAGAGGATCCCAGGGTGACAGTAAACAGCAAAATGGCCCACCAAGAAAACACATTGTGGAGCGCTA  740
            ||||||||||||||||||||||||||||.|||.|||||||||||||||||||||||||||||||||||||||.|
Sbjct  340  GGACAGAGAAGAGGATCCCAGGGTGACATTAAGCAGCAAAATGGCCCACCAAGAAAACACATTGTGGAGCGCAA  413

Query  741  TACAGAGTTTTATCATGTACCCACTCACAGTGATGCCAGCAAGAAGAGACTGATTGAGGATACTGAAGACTGGC  814
            .||.|||||||||||..||||||||||||||||||||||||||||..|.|||||||||||.|||||.|||||||
Sbjct  414  CACGGAGTTTTATCACATACCCACTCACAGTGATGCCAGCAAGAAACGGCTGATTGAGGACACTGAGGACTGGC  487

Query  815  GTCCAAGGACTGGAACAACTCAGTCTCGCTCTTTCCGAATCCTTGCCCAGATCACTGGGACTGAACATTTGAAA  888
            |.||..||||||||||.|||||||||||.||||||||.||||||||||||||||||||||||||.|||.|||.|
Sbjct  488  GCCCCCGGACTGGAACGACTCAGTCTCGTTCTTTCCGGATCCTTGCCCAGATCACTGGGACTGAGCATCTGACA  561

Query  889  GAATCTGAAGCCGATAATACAAAGAAGGCAAATAACTCTCAGGAGCCTTCTCCGCAGTTGGCTTCCTCGGTAGC  962
            |||||||||...||.|||||.|||||||||||||.|.|.|||||||||||||.|||...|||.||.||.|.|||
Sbjct  562  GAATCTGAAAATGACAATACGAAGAAGGCAAATAGCACCCAGGAGCCTTCTCAGCAACCGGCGTCATCTGGAGC  635

Query  963  TTCCACACGGAGCATGCCCGAGAGCCTGGACAGCCCAACCTCTGGCAGACCAGGGGTTACCAGCCTCACAACTG  1036
            |||..|.|.||||..|.|.|||.|||..||.||||||...||..||||.||...|||..|..|||||....|.|
Sbjct  636  TTCACCTCTGAGCGCGTCTGAGGGCCCCGAGAGCCCAGGTTCCAGCAGGCCCTCGGTGGCTGGCCTCCGCTCCG  709

Query 1037  CAGCTGCCTTCAAGCCTGTAGGATCCACTGGCGTCATCAAGTCACCAAGCTGGCAACGGCCAAACCAAGGAGTA  1110
            |.|||||.||||||||||||||||||||..|||   ||||||||||.||||||||.||.||||||||||.||.|
Sbjct  710  CTGCTGCTTTCAAGCCTGTAGGATCCACCAGCG---TCAAGTCACCTAGCTGGCAGCGTCCAAACCAAGCAGCA  780

Query 1111  CCTTCCACTGGAAGAATCTCAAACAGCGCTGCTTACTCAGGATCAGTGGCACCAGCCAACTCAG-CTTTGGGAC  1183
            |||||.|||||.|||||.|||||||..||...||..|||||..|||.|||             | ||.||||.|
Sbjct  781  CCTTCTACTGGGAGAATTTCAAACAATGCACGTTCTTCAGGTACAGGGGC-------------GTCTGTGGGGC  841

Query 1184  AAACCCAGCCAAGTGACCAGGACACTTTAGTGCAAAGAGCTGAGCACATTCCAGCAGGGAAACGAACTCCGATG  1257
            ...||||||||||||||||.|||||..|.|||||.|||||.||.|||||||||||.||.||.||.||.||.|||
Sbjct  842  CTCCCCAGCCAAGTGACCAAGACACACTTGTGCAGAGAGCGGAACACATTCCAGCGGGCAAGCGGACCCCCATG  915

Query 1258  TGCGCCCATTGTAACCAGGTCATCAGAGGACC-ATTCTTAGTGGCACTGGGGAAATCTTGGCACCCAGAAGAAT  1330
            ||.|||||.||.|||||.||.|||||.||||| .||||| |||||.||||||||.||.|||||.||||||||||
Sbjct  916  TGTGCCCACTGCAACCAAGTTATCAGGGGACCTTTTCTT-GTGGCTCTGGGGAAGTCCTGGCATCCAGAAGAAT  988

Query 1331  TCAACTGCGCTCACTGCAAAAATACAATGGCCTACATTGGATTTGTAGAGGAGAAAGGAGCCCTGTATTGTGAG  1404
            |.|||||.|||||.||||||||.||||||||||||||.||.||||||||||||||.|||||.|||||.||||||
Sbjct  989  TTAACTGTGCTCATTGCAAAAACACAATGGCCTACATAGGCTTTGTAGAGGAGAAGGGAGCACTGTACTGTGAG  1062

Query 1405  CTGTGCTATGAGAAATTCTTTGCCCCTGAATGTGGTCGATGCCAAAGGAAGATCCTTGGAGAAGTCATCAATGC  1478
            ||.|||||||||||.||||||||.|||||||||||.||.|||||||||||||||||||||||||||||||||||
Sbjct 1063  CTATGCTATGAGAAGTTCTTTGCTCCTGAATGTGGCCGGTGCCAAAGGAAGATCCTTGGAGAAGTCATCAATGC  1136

Query 1479  GTTGAAACAAACTTGGCATGTTTCCTGTTTTGTGTGTGTAGCCTGTGGAAAGCCCATTCGGAACAATGTTTTTC  1552
            .|||||.||.||.||||||||.|||||||||||||||||.|||||||||||.||||||||.||.||||||||.|
Sbjct 1137  TTTGAAGCAGACCTGGCATGTGTCCTGTTTTGTGTGTGTGGCCTGTGGAAAACCCATTCGTAATAATGTTTTCC  1210

Query 1553  ACTTGGAGGATGGTGAACCCTACTGTGAGACTGATTATTATGCCCTCTTTGGTACTATATGCCATGGATGTGAA  1626
            |||||||.|||||.||.||||||||||||||.||.||.||.|||||.|||||.||.|||||.|.||||||||||
Sbjct 1211  ACTTGGAAGATGGCGAGCCCTACTGTGAGACAGACTACTACGCCCTTTTTGGAACAATATGTCGTGGATGTGAA  1284

Query 1627  TTTCCCATAGAAGCTGGTGACATGTTCCTGGAAGCTCTGGGCTACACCTGGCATGACACTTGCTTTGTATGCTC  1700
            ||.||||||||.|||||||||||||||||||||||||||||.|||||.||||||||.|||||||||||.|||||
Sbjct 1285  TTCCCCATAGAGGCTGGTGACATGTTCCTGGAAGCTCTGGGATACACTTGGCATGATACTTGCTTTGTGTGCTC  1358

Query 1701  AGTGTGTTGTGAAAGTTTGGAAGGTCAGACCTTTTTCTCCAAGAAGGACAAGCCCCTGTGTAAGAAACATGCTC  1774
            .|||||||||||||||||||||||.|||||.|||||||||||||||||||||||.||.||.||.||||||||||
Sbjct 1359  TGTGTGTTGTGAAAGTTTGGAAGGGCAGACATTTTTCTCCAAGAAGGACAAGCCACTTTGCAAAAAACATGCTC  1432

Query 1775  ATTCTGTGAATTTT  1788
            ||||||||||||||
Sbjct 1433  ATTCTGTGAATTTT  1446

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