Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_07685
• Subject: NM_001113495.1
• Aligned Length: 1763
• Identities: 1279
• Gaps: 400

Alignment

Query    1  ATGGAGAGGGACCGGATCTCAGCCTTGAAAAGATCTTTTGAGGTCGAGGAGGTCGAGACACCCAACTCCACCCC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  ACCCCGGAGGGTCCAGACTCCCCTACTCCGAGCCACTGTGGCCAGCTCCACCCAGAAATTCCAGGACCTGGGCG  148
                                                                               .||||| 
Sbjct    1  -------------------------------------------------------------------ATGGGC-  6

Query  149  TGAAG-AACTCAGAACCCTCGGCCCGCCATGTGGACTCCCTAAGCCAAC---------GCTCCCCCAAGGCGTC  212
            |.||| ..||..|||     ||||.| ||.||||   ||.||.|.|..|         |||..|||.||| |||
Sbjct    7  TCAAGTTTCTGGGAA-----GGCCTG-CAGGTGG---CCGTAGGGCTGCCGCAGGGGTGCTGGCCCCAGG-GTC  70

Query  213  --------------CCTGCGGAGGGTGG--AGCTCTCGGGCCCCAAGGCGGCCGAGCCGGTGTCCCGGCGCACT  270
                          |||||.|||||.||  ||||   ||      ||||.||          |||.|       
Sbjct   71  TGGATTCAGGGGAGCCTGCAGAGGGAGGGCAGCT---GG------AGGCTGC----------TCCAG-------  118

Query  271  GAGCTGTCCATTGACATCTCGTCCAAGCAGGTGGAGAACGCCGGGGCCATCGGCCCGTCCCGGTTCGGGCTCAA  344
                |||.|||||..| |..|.|.|||.|  .|||||..||.|||.|||           ||.|          
Sbjct  119  ----TGTGCATTGTTA-CGAGGCAAAGTA--AGGAGACTGCTGGGCCCA-----------CGCT----------  164

Query  345  GAGGGCCGAGGTGTTGGGCCACAAGACGCCAGAACCGGCCCCTCGGAGGACGGAGATCACCATCGTCAAACCCC  418
              ||||||.|||                                   |||.||||                .|.
Sbjct  165  --GGGCCGGGGT-----------------------------------GGATGGAG----------------GCA  185

Query  419  AGGAGTCAGCC--CACCGGAGGATGGAGCCCCCTGCCTCCAAGGTCCCC-----GAGGTGCCCAC----TGCCC  481
            ||||   ||.|  |.||||.|                  |||||.|.||     .||.||||..|    |.|.|
Sbjct  186  AGGA---AGTCTTCGCCGGGG------------------CAAGGGCACCAGCTGTAGATGCCGGCAGCTTTCTC  238

Query  482  CTGCCACCGACGCAGCCC-------CCAAGAGGGTGGAGATCCAGATGCCCAAGCCTGCTGAG-GCGCCCACCG  547
            |||     |||.|.|.||       |..|.||||||                    ||.|||| |   ||||||
Sbjct  239  CTG-----GACACGGGCCTGGAAGGCTGACAGGGTG--------------------TGGTGAGTG---CCACCG  284

Query  548  CCCCCAGCCCAGCCCAGACCTTGGAGAATTCAGAGCCT------GCCCCTGTGTCTCAGCTGCA-GAGCAGGCT  614
            .|.|   |||.|||..|.|||.|      ||||.|.||      |||.|.|||       .||| |||.|||  
Sbjct  285  GCTC---CCCTGCCGTGGCCTGG------TCAGTGGCTTCACAGGCCTCCGTG-------GGCAGGAGGAGG--  340

Query  615  GGAGCCCAAGCCCCAGCCCCCTG--TGGCTGAGGCTACACC----CCGGAGCCAG-GAGGCCACTGAGGCGGCT  681
                   |.|.||..||...|||  ||||        ||||    .|.|.|.||| .|.|||||||||||||||
Sbjct  341  -------ATGACCTTGCATTCTGCTTGGC--------CACCATTGGCAGTGACAGACAAGCCACTGAGGCGGCT  399

Query  682  CCCAGCTGCGTTGGCGACATGGCCGACACCCCCAGAGATGCCGGGCTCAAGCAGGCGCCTGCATCACGGAACGA  755
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  400  CCCAGCTGCGTTGGCGACATGGCCGACACCCCCAGAGATGCCGGGCTCAAGCAGGCGCCTGCATCACGGAACGA  473

Query  756  GAAGGCCCCGGTGGACTTCGGCTACGTGGGGATTGACTCCATCCTGGAGCAGATGCGCCGGAAGGCCATGAAGC  829
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  474  GAAGGCCCCGGTGGACTTCGGCTACGTGGGGATTGACTCCATCCTGGAGCAGATGCGCCGGAAGGCCATGAAGC  547

Query  830  AGGGCTTCGAGTTCAACATCATGGTGGTCGGGCAGAGCGGCTTGGGTAAATCCACCTTAATCAACACCCTCTTC  903
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  548  AGGGCTTCGAGTTCAACATCATGGTGGTCGGGCAGAGCGGCTTGGGTAAATCCACCTTAATCAACACCCTCTTC  621

Query  904  AAATCCAAAATCAGCCGGAAGTCGGTGCAGCCCACCTCAGAGGAGCGCATCCCCAAGACCATCGAGATCAAGTC  977
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  622  AAATCCAAAATCAGCCGGAAGTCGGTGCAGCCCACCTCAGAGGAGCGCATCCCCAAGACCATCGAGATCAAGTC  695

Query  978  CATCACGCACGATATTGAGGAGAAAGGCGTCCGGATGAAGCTGACAGTGATTGACACACCAGGGTTCGGGGACC  1051
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  696  CATCACGCACGATATTGAGGAGAAAGGCGTCCGGATGAAGCTGACAGTGATTGACACACCAGGGTTCGGGGACC  769

Query 1052  ACATCAACAACGAGAACTGCTGGCAGCCCATCATGAAGTTCATCAATGACCAGTACGAGAAATACCTGCAGGAG  1125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  770  ACATCAACAACGAGAACTGCTGGCAGCCCATCATGAAGTTCATCAATGACCAGTACGAGAAATACCTGCAGGAG  843

Query 1126  GAGGTCAACATCAACCGCAAGAAGCGCATCCCGGACACCCGCGTCCACTGCTGCCTCTACTTCATCCCCGCCAC  1199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  844  GAGGTCAACATCAACCGCAAGAAGCGCATCCCGGACACCCGCGTCCACTGCTGCCTCTACTTCATCCCCGCCAC  917

Query 1200  CGGCCACTCCCTCAGGCCCCTGGACATCGAGTTTATGAAACGCCTGAGCAAGGTGGTCAACATCGTCCCTGTCA  1273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  918  CGGCCACTCCCTCAGGCCCCTGGACATCGAGTTTATGAAACGCCTGAGCAAGGTGGTCAACATCGTCCCTGTCA  991

Query 1274  TCGCCAAGGCGGACACACTCACCCTGGAGGAGAGGGTCCACTTCAAACAGCGGATCACCGCAGACCTGCTGTCC  1347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  992  TCGCCAAGGCGGACACACTCACCCTGGAGGAGAGGGTCCACTTCAAACAGCGGATCACCGCAGACCTGCTGTCC  1065

Query 1348  AACGGCATCGACGTGTACCCCCAGAAGGAATTTGATGAGGACTCGGAGGACCGGCTGGTGAACGAGAAGTTCCG  1421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066  AACGGCATCGACGTGTACCCCCAGAAGGAATTTGATGAGGACTCGGAGGACCGGCTGGTGAACGAGAAGTTCCG  1139

Query 1422  GGAGATGATCCCATTTGCTGTGGTGGGCAGTGACCACGAGTACCAGGTCAACGGCAAGAGGATCCTTGGGAGGA  1495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140  GGAGATGATCCCATTTGCTGTGGTGGGCAGTGACCACGAGTACCAGGTCAACGGCAAGAGGATCCTTGGGAGGA  1213

Query 1496  AGACCAAGTGGGGTACCATCGAAGTTGAAAACACCACACACTGTGAGTTTGCCTACCTGCGGGACCTTCTCATC  1569
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214  AGACCAAGTGGGGTACCATCGAAGTTGAAAACACCACACACTGTGAGTTTGCCTACCTGCGGGACCTTCTCATC  1287

Query 1570  AGGACGCACATGCAGAACATCAAGGACATCACCAGCAGCATCCACTTCGAGGCGTACCGTGTGAAGCGCCTCAA  1643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288  AGGACGCACATGCAGAACATCAAGGACATCACCAGCAGCATCCACTTCGAGGCGTACCGTGTGAAGCGCCTCAA  1361

Query 1644  CGAGGGCAGCAGCGCCATGGCCAACGGCGTGGAGGAGAAGGAGCCAGAAGCCCCGGAGAGG  1704
            ||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||.|
Sbjct 1362  CGAGGGCAGCAGCGCCATGGCCAACGGCATGGAGGAGAAGGAGCCAGAAGCCCCGGAGATG  1422