Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_07723
• Subject: NM_001081639.3
• Aligned Length: 1972
• Identities: 1145
• Gaps: 647

Alignment

Query    1  ATGATCCCCACCTTCACGGCTCTGCTCTGCCTCGGGCTGAGTCTGGGCCCCAGGACCGACATGCAGGCAGGGCC  74
            ||||.|||||.|.||||||..|||.||||.|||||||||||||||||||||.|||||.||.||||||||||||.
Sbjct    1  ATGACCCCCATCCTCACGGTCCTGATCTGTCTCGGGCTGAGTCTGGGCCCCCGGACCCACGTGCAGGCAGGGCA  74

Query   75  CCTCCCCAAACCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCAGCTGGGGGAACTCTGTGACCATCTGGTGTC  148
            |||||||||.|||||||||||||||||.||||||||||||||||.|..|||||...||||||||.||.||||||
Sbjct   75  CCTCCCCAAGCCCACCCTCTGGGCTGAACCAGGCTCTGTGATCACCCAGGGGAGTCCTGTGACCCTCAGGTGTC  148

Query  149  AGGGGACCCTGGAGGCTCGGGAGTACCGTCTGGATAAAGAGGAAAG--CCCAGCACCCTGGGACAGACAGAACC  220
            |||||..||.||||.|.|.||||||||||||  |||.||||.||||  ..|||||||||||...|.||.||.||
Sbjct  149  AGGGGGGCCAGGAGACCCAGGAGTACCGTCT--ATATAGAGAAAAGAAAACAGCACCCTGGATTACACGGATCC  220

Query  221  CACTGGAGCCCAAGAACAA-GGCCAGATTCTCCATCCCATCCATGACAGAGGACTATGCAGGGAGATACCGCTG  293
            |||.|||||....|||.|| |||||| |||.|||||||||||||.||...|||..|..|||||.|.||.|||||
Sbjct  221  CACAGGAGCTTGTGAAGAAGGGCCAG-TTCCCCATCCCATCCATCACCTGGGAACACACAGGGCGGTATCGCTG  293

Query  294  TTACTATCGCAG---CCCTGTAGGCTGGTCACAGCCCAGTGACCCCCTGGAGCTGGTGATGACAGGAGCCTACA  364
            |||||||.|.||   |.|||.||||.|.|||.||..||||||||||||||||||||||.|||||||||||||||
Sbjct  294  TTACTATGGTAGCGACACTGCAGGCCGCTCAGAGAGCAGTGACCCCCTGGAGCTGGTGGTGACAGGAGCCTACA  367

Query  365  GTAAACCCACCCTTTCAGCCCTG---------------------------------------------------  387
            ..|||||||||||.|||||||.|                                                   
Sbjct  368  TCAAACCCACCCTCTCAGCCCAGCCCAGCCCCGTGGTGAACTCAGGAGGGAATGTAACCCTCCAGTGTGACTCA  441

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct  442  CAGGTGGCATTTGATGGCTTCATTCTGTGTAAGGAAGGAGAAGATGAACACCCACAATGCCTGAACTCCCAGCC  515

Query  388  -------------------------------------------------CCGAGTC------------------  394
                                                             |||||||                  
Sbjct  516  CCATGCCCGTGGGTCGTCCCGCGCCATCTTCTCCGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTGGTACAGGT  589

Query  395  -------------------CTCT---------------------------------------------------  398
                               ||||                                                   
Sbjct  590  GCTATGCTTATGACTCGAACTCTCCCTATGAGTGGTCTCTACCCAGTGATCTCCTGGAGCTCCTGGTCCTAGGT  663

Query  399  --------------------------------------------------------------------------  398
                                                                                      
Sbjct  664  GTTTCTAAGAAGCCATCACTCTCAGTGCAGCCAGGTCCTATCGTGGCCCCTGAGGAGACCCTGACTCTGCAGTG  737

Query  399  --------------------------------------------------------------------------  398
                                                                                      
Sbjct  738  TGGCTCTGATGCTGGCTACAACAGATTTGTTCTGTATAAGGACGGGGAACGTGACTTCCTTCAGCTCGCTGGCG  811

Query  399  ----------------------------------------------TGTGA-----------------------  403
                                                          |||||                       
Sbjct  812  CACAGCCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCTACGGGGGCCAGTAC  885

Query  404  --------------------------------------------------------------------------  403
                                                                                      
Sbjct  886  AGATGCTACGGTGCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGGACATCCTGATCGCAGG  959

Query  404  --------------------------------------------------CCTCAGGAAAGAGCGTGACCCTGC  427
                                                              ||||||||.|||.|||||||||||
Sbjct  960  ACAGTTCTATGACAGAGTCTCCCTCTCGGTGCAGCCGGGCCCCACGGTGGCCTCAGGAGAGAACGTGACCCTGC  1033

Query  428  TGTGTCAGTCACGGAGCCCAATGG----ACACTTTCCTTCTGATCAAGGAGCGGGCAGCCCATCCCCTACTGCA  497
            ||||||||||||.|.|    ||||    |.|||||||||||||.|||||||.|||||||..||..||.|..||.
Sbjct 1034  TGTGTCAGTCACAGGG----ATGGATGCAAACTTTCCTTCTGACCAAGGAGGGGGCAGCTGATGACCCATGGCG  1103

Query  498  TCTGAGATCAGAGCACGGAGCTCAGCAGCACCAGGCTGAATTCCCCATGAGTCCTGTGACCTCAGTGCACGGGG  571
            |||.||||||..|.||..|.||||..|..||||||||||||||||||||.|||||||||||||||..||.|.||
Sbjct 1104  TCTAAGATCAACGTACCAATCTCAAAAATACCAGGCTGAATTCCCCATGGGTCCTGTGACCTCAGCCCATGCGG  1177

Query  572  GGACCTACAGGTGCTTCAGCTCACACGGCTTCTCCCA----CTACCTGCTGTCACACCCCAGTGACCCCCTGGA  641
            |||||||||||||||.|.|||||||..|||    |||    ||||||||||.|.||||||||||||||||||||
Sbjct 1178  GGACCTACAGGTGCTACGGCTCACAGAGCT----CCAAACCCTACCTGCTGACTCACCCCAGTGACCCCCTGGA  1247

Query  642  GCTCATAGTCTCAGGATCCT-TGGAGGGTCCCAGGCCCTCACCCACAA---GGTCCGTCTCAACAGCTGCAGGC  711
            ||||.|.|||||||||.|.| ||| |||.|||||   |||.||.||||   |..||..|||.|||.||   |||
Sbjct 1248  GCTCGTGGTCTCAGGACCGTCTGG-GGGCCCCAG---CTCCCCGACAACAGGCCCCACCTCCACATCT---GGC  1314

Query  712  CCTGAGGACCAGCCCCTCATGCCTACAGGGTCAGTCCCCCACAGTGGTCTGAGAAGGCA-CTGGGAGGTACTGA  784
            |||||||||||||||||||..||.||.|||||.|..|||||.|||||||||.||||||| ||||| |||..|||
Sbjct 1315  CCTGAGGACCAGCCCCTCACCCCCACCGGGTCGGATCCCCAGAGTGGTCTGGGAAGGCACCTGGG-GGTTGTGA  1387

Query  785  TCGGGGTCTTGGTGGTCTCCATCCTGCTTCT-CTC-----CCTCCTCCTCTTCCTCCTCCTCCAACACTGGCGT  852
            ||||..|||||||||.|..||||||.||.|| |||     ||||||||||||||||.||||||.|||..|.|||
Sbjct 1388  TCGGCATCTTGGTGGCCGTCATCCTACTGCTCCTCCTCCTCCTCCTCCTCTTCCTCATCCTCCGACATCGACGT  1461

Query  853  CAGGGAAAACACAGGACATTGGCCCAGAGACAGGCTGATTTCCAACGTCCTCCAGGGGCTGCCGAGCCAGAGCC  926
            |||||.||||||.||||||.|.||||||||.|||||||||||||||.||||.|||||||||..|.|||||||||
Sbjct 1462  CAGGGCAAACACTGGACATCGACCCAGAGAAAGGCTGATTTCCAACATCCTGCAGGGGCTGTGGGGCCAGAGCC  1535

Query  927  CAAGGACGGGGGCCTACAGAGGAGGTCCAGCCCAGCTGCTGACGTCCAGGGAGAAAACTTCTGTGCTGCCGTGA  1000
            ||..|||.|.|||||.|||.|||||||||||||||||||.||.|.|||||.|||||||.|||.|||||||||||
Sbjct 1536  CACAGACAGAGGCCTGCAGTGGAGGTCCAGCCCAGCTGCCGATGCCCAGGAAGAAAACCTCTATGCTGCCGTGA  1609

Query 1001  AGAACACACAGCCTGAGGACGGGGTGGAAATGGACACTCGGCAGAGCCCACACGATGAAGACCCCCAGGCAGTG  1074
            ||.||||||||||||||||.||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610  AGCACACACAGCCTGAGGATGGGGTGGAGATGGACACTCGGCAGAGCCCACACGATGAAGACCCCCAGGCAGTG  1683

Query 1075  ACGTATGCCAAGGTGAAACACTCCAGACCTAGGAGAGAAATGGCCTCTCCTCCCTCCCCACTGTCTGGGGAATT  1148
            |||||||||.|||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct 1684  ACGTATGCCGAGGTGAAACACTCCAGACCTAGGAGAGAAATGGCCTCTCCTCCTTCCCCACTGTCTGGGGAATT  1757

Query 1149  CCTGGACACAAAGGACAGACAGGCAGAAGAGGACAGACAGATGGACACTGAGGCTGCTGCATCTGAAGCCCCCC  1222
            ||||||||||||||||||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct 1758  CCTGGACACAAAGGACAGACAGGCGGAAGAGGACAGGCAGATGGACACTGAGGCTGCTGCATCTGAAGCCCCCC  1831

Query 1223  AGGATGTGACCTACGCCCGGCTGCACAGCTTTACCCTCAGACAGAAGGCAACTGAGCCTCCTCCATCCCAGGAA  1296
            ||||||||||||||||||.||||||||||||.||||||||||.|.|||||||||||||||||||||||||||||
Sbjct 1832  AGGATGTGACCTACGCCCAGCTGCACAGCTTGACCCTCAGACGGGAGGCAACTGAGCCTCCTCCATCCCAGGAA  1905

Query 1297  GGGGCCTCTCCAGCTGAGCCCAGTGTCTATGCCACTCTGGCCATCCAC  1344
            |||.||||||||||||.||||||..||||.||||||||||||||||||
Sbjct 1906  GGGCCCTCTCCAGCTGTGCCCAGCATCTACGCCACTCTGGCCATCCAC  1953