Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_07723
• Subject: NM_001278398.2
• Aligned Length: 1968
• Identities: 1109
• Gaps: 690

Alignment

Query    1  ATGATCCCCACCTTCACGGCTCTGCTCTGCCTCGGGCTGAGTCTGGGCCCCAGGACCGACATGCAGGCAGGGCC  74
            ||||.|||||.|.||||||..|||.||||.|||||||||||||||||||||.|||||.||.||||||||||||.
Sbjct    1  ATGACCCCCATCCTCACGGTCCTGATCTGTCTCGGGCTGAGTCTGGGCCCCCGGACCCACGTGCAGGCAGGGCA  74

Query   75  CCTCCCCAAACCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCAGCTGGGGGAACTCTGTGACCATCTGGTGTC  148
            |||||||||.|||||||||||||||||.||||||||||||||||.|..|||||...||||||||.||.||||||
Sbjct   75  CCTCCCCAAGCCCACCCTCTGGGCTGAACCAGGCTCTGTGATCACCCAGGGGAGTCCTGTGACCCTCAGGTGTC  148

Query  149  AGGGGACCCTGGAGGCTCGGGAGTACCGTCTGGATAAAGAGGAAAG--CCCAGCACCCTGGGACAGACAGAACC  220
            |||||..||.||||.|.|.||||||||||||  |||.||||.||||  ..|||||||||||...|.||.||.||
Sbjct  149  AGGGGGGCCAGGAGACCCAGGAGTACCGTCT--ATATAGAGAAAAGAAAACAGCACCCTGGATTACACGGATCC  220

Query  221  CACTGGAGCCCAAGAACAA-GGCCAGATTCTCCATCCCATCCATGACAGAGGACTATGCAGGGAGATACCGCTG  293
            |||.|||||....|||.|| |||||| |||.|||||||||||||.||...|||..|..|||||.|.||.|||||
Sbjct  221  CACAGGAGCTTGTGAAGAAGGGCCAG-TTCCCCATCCCATCCATCACCTGGGAACACACAGGGCGGTATCGCTG  293

Query  294  TTACTATCGCAG---CCCTGTAGGCTGGTCACAGCCCAGTGACCCCCTGGAGCTGGTGATGACAGGAGCCTACA  364
            |||||||.|.||   |.|||.||||.|.|||.||..||||||||||||||||||||||.|||||||||||||||
Sbjct  294  TTACTATGGTAGCGACACTGCAGGCCGCTCAGAGAGCAGTGACCCCCTGGAGCTGGTGGTGACAGGAGCCTACA  367

Query  365  GTAAACCCACCCTTTCAGCCCTG---------------------------------------------------  387
            ..|||||||||||.|||||||.|                                                   
Sbjct  368  TCAAACCCACCCTCTCAGCCCAGCCCAGCCCCGTGGTGAACTCAGGAGGGAATGTAACCCTCCAGTGTGACTCA  441

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct  442  CAGGTGGCATTTGATGGCTTCATTCTGTGTAAGGAAGGAGAAGATGAACACCCACAATGCCTGAACTCCCAGCC  515

Query  388  -------------------------------------------------CCGAGTC------------------  394
                                                             |||||||                  
Sbjct  516  CCATGCCCGTGGGTCGTCCCGCGCCATCTTCTCCGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTGGTACAGGT  589

Query  395  -------------------CTCT---------------------------------------------------  398
                               ||||                                                   
Sbjct  590  GCTATGCTTATGACTCGAACTCTCCCTATGAGTGGTCTCTACCCAGTGATCTCCTGGAGCTCCTGGTCCTAGGT  663

Query  399  --------------------------------------------------------------------------  398
                                                                                      
Sbjct  664  GTTTCTAAGAAGCCATCACTCTCAGTGCAGCCAGGTCCTATCGTGGCCCCTGAGGAGACCCTGACTCTGCAGTG  737

Query  399  --------------------------------------------------------------------------  398
                                                                                      
Sbjct  738  TGGCTCTGATGCTGGCTACAACAGATTTGTTCTGTATAAGGACGGGGAACGTGACTTCCTTCAGCTCGCTGGCG  811

Query  399  ----------------------------------------------TGTGA-----------------------  403
                                                          |||||                       
Sbjct  812  CACAGCCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCTACGGGGGCCAGTAC  885

Query  404  --------------------------------------------------------------------------  403
                                                                                      
Sbjct  886  AGATGCTACGGTGCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGGACATCCTGATCGCAGG  959

Query  404  --------------------------------------------------CCTCAGGAAAGAGCGTGACCCTGC  427
                                                              ||||||||.|||.|||||||||||
Sbjct  960  ACAGTTCTATGACAGAGTCTCCCTCTCGGTGCAGCCGGGCCCCACGGTGGCCTCAGGAGAGAACGTGACCCTGC  1033

Query  428  TGTGTCAGTCACGGAGCCCAATGG----ACACTTTCCTTCTGATCAAGGAGCGGGCAGCCCATCCCCTACTGCA  497
            ||||||||||||.|.|    ||||    |.|||||||||||||.|||||||.|||||||..||..||.|..||.
Sbjct 1034  TGTGTCAGTCACAGGG----ATGGATGCAAACTTTCCTTCTGACCAAGGAGGGGGCAGCTGATGACCCATGGCG  1103

Query  498  TCTGAGATCAGAGCACGGAGCTCAGCAGCACCAGGCTGAATTCCCCATGAGTCCTGTGACCTCAGTGCACGGGG  571
            |||.||||||..|.||..|.||||..|..||||||||||||||||||||.|||||||||||||||..||.|.||
Sbjct 1104  TCTAAGATCAACGTACCAATCTCAAAAATACCAGGCTGAATTCCCCATGGGTCCTGTGACCTCAGCCCATGCGG  1177

Query  572  GGACCTACAGGTGCTTCAGCTCACACGGCTTCTCCCA----CTACCTGCTGTCACACCCCAGTGACCCCCTGGA  641
            |||||||||||||||.|.|||||||..|||    |||    ||||||||||.|.||||||||||||||||||||
Sbjct 1178  GGACCTACAGGTGCTACGGCTCACAGAGCT----CCAAACCCTACCTGCTGACTCACCCCAGTGACCCCCTGGA  1247

Query  642  GCTCATAGTCTCAGGATCCTTGGAGGGTCCCAGGCCCTCACCCACAAGGTCCGTCTCAACAGCTGCAGGCCCTG  715
            ||||.|.||||||                                                   ||||||||||
Sbjct 1248  GCTCGTGGTCTCA---------------------------------------------------GCAGGCCCTG  1270

Query  716  AGGACCAGCCCCTCATGCCTACAGGGTCAGTCCCCCACAGTGGTCTGAGAAGGCA-CTGGGAGGTACTGATCGG  788
            |||||||||||||||..||.||.|||||.|..|||||.|||||||||.||||||| ||||| |||..|||||||
Sbjct 1271  AGGACCAGCCCCTCACCCCCACCGGGTCGGATCCCCAGAGTGGTCTGGGAAGGCACCTGGG-GGTTGTGATCGG  1343

Query  789  GGTCTTGGTGGTCTCCATCCTGCTTCT-CTC-----CCTCCTCCTCTTCCTCCTCCTCCAACACTGGCGTCAGG  856
            ..|||||||||.|..||||||.||.|| |||     ||||||||||||||||.||||||.|||..|.|||||||
Sbjct 1344  CATCTTGGTGGCCGTCATCCTACTGCTCCTCCTCCTCCTCCTCCTCTTCCTCATCCTCCGACATCGACGTCAGG  1417

Query  857  GAAAACACAGGACATTGGCCCAGAGACAGGCTGATTTCCAACGTCCTCCAGGGGCTGCCGAGCCAGAGCCCAAG  930
            |.||||||.||||||.|.||||||||.|||||||||||||||.||||.|||||||||..|.|||||||||||..
Sbjct 1418  GCAAACACTGGACATCGACCCAGAGAAAGGCTGATTTCCAACATCCTGCAGGGGCTGTGGGGCCAGAGCCCACA  1491

Query  931  GACGGGGGCCTACAGAGGAGGTCCAGCCCAGCTGCTGACGTCCAGGGAGAAAACTTCTGTGCTGCCGTGAAGAA  1004
            |||.|.|||||.|||.|||||||||||||||||||.||.|.|||||.|||||||.|||.|||||||||||||.|
Sbjct 1492  GACAGAGGCCTGCAGTGGAGGTCCAGCCCAGCTGCCGATGCCCAGGAAGAAAACCTCTATGCTGCCGTGAAGCA  1565

Query 1005  CACACAGCCTGAGGACGGGGTGGAAATGGACACTCGGCAGAGCCCACACGATGAAGACCCCCAGGCAGTGACGT  1078
            |||||||||||||||.||||||||.|||||||||||   |||||||||||||||||||||||||||||||||||
Sbjct 1566  CACACAGCCTGAGGATGGGGTGGAGATGGACACTCG---GAGCCCACACGATGAAGACCCCCAGGCAGTGACGT  1636

Query 1079  ATGCCAAGGTGAAACACTCCAGACCTAGGAGAGAAATGGCCTCTCCTCCCTCCCCACTGTCTGGGGAATTCCTG  1152
            |||||.|||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 1637  ATGCCGAGGTGAAACACTCCAGACCTAGGAGAGAAATGGCCTCTCCTCCTTCCCCACTGTCTGGGGAATTCCTG  1710

Query 1153  GACACAAAGGACAGACAGGCAGAAGAGGACAGACAGATGGACACTGAGGCTGCTGCATCTGAAGCCCCCCAGGA  1226
            ||||||||||||||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 1711  GACACAAAGGACAGACAGGCGGAAGAGGACAGGCAGATGGACACTGAGGCTGCTGCATCTGAAGCCCCCCAGGA  1784

Query 1227  TGTGACCTACGCCCGGCTGCACAGCTTTACCCTCAGACAGAAGGCAACTGAGCCTCCTCCATCCCAGGAAGGGG  1300
            ||||||||||||||.||||||||||||.||||||||||.|.||||||||||||||||||||||||||||||||.
Sbjct 1785  TGTGACCTACGCCCAGCTGCACAGCTTGACCCTCAGACGGGAGGCAACTGAGCCTCCTCCATCCCAGGAAGGGC  1858

Query 1301  CCTCTCCAGCTGAGCCCAGTGTCTATGCCACTCTGGCCATCCAC  1344
            ||||||||||||.||||||..||||.||||||||||||||||||
Sbjct 1859  CCTCTCCAGCTGTGCCCAGCATCTACGCCACTCTGGCCATCCAC  1902