Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07729
- Subject:
- XR_002958244.1
- Aligned Length:
- 3264
- Identities:
- 1190
- Gaps:
- 1961
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTTTTCTTCCCTATTTCCCTGCATTTCTCTTCTGTGCTCACTGCCACACGCAGCTCAGCCTGGGCGGCACAGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGATGCGAGATGCGTCTCTGCTGATCTGAGTCTGCCTGCAGCATGGACCTGGGTCTTCCCTGAAGCATCTCCAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGCTGGAGGGACGACTGCCATGATGACAGCACCCCATGAGAAGAAGGACCCAGCCTCCGATTGGCCACACTCTG 222
Query 1 ---------------------------------------------------------------------ATGAC 5
|||||
Sbjct 223 TGTGTCTCTCTATCCTGCCAGCACCGAGGGCTCATCCATCCACAGAGCAGGGCAGTGGGAGGAGACGCCATGAC 296
Query 6 CTCCATCCTCACGGTCCTGATCTGTCTCGGGCTGAGCCTGGACCCCAGGACCCACGTGCAGGCAGGGCCCCTCC 79
|.||||||||||||||||||||||||||||||||||.||||.||||.|||||||||||||||||||||.|||||
Sbjct 297 CCCCATCCTCACGGTCCTGATCTGTCTCGGGCTGAGTCTGGGCCCCCGGACCCACGTGCAGGCAGGGCACCTCC 370
Query 80 CCAAGCCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCACCCAAGGGAGTCCTGTGACCCTCAGGTGTCAGGGG 153
||||||||||||||||||||||.||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 371 CCAAGCCCACCCTCTGGGCTGAACCAGGCTCTGTGATCACCCAGGGGAGTCCTGTGACCCTCAGGTGTCAGGGG 444
Query 154 AGCCTGGAGACGCAGGAGTACCATCTATATAGAGAAAAGAAAACAGCACTCTGGATTACACGGATCCCACAGGA 227
.|||.||||||.||||||||||.||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 445 GGCCAGGAGACCCAGGAGTACCGTCTATATAGAGAAAAGAAAACAGCACCCTGGATTACACGGATCCCACAGGA 518
Query 228 GCTTGTGAAGAAGGGCCAGTTCCCCATCCTATCCATCACCTGGGAACATGCAGGGCGGTATTGCTGTATCTATG 301
|||||||||||||||||||||||||||||.||||||||||||||||||..|||||||||||.|||||..|||||
Sbjct 519 GCTTGTGAAGAAGGGCCAGTTCCCCATCCCATCCATCACCTGGGAACACACAGGGCGGTATCGCTGTTACTATG 592
Query 302 GCAGCCACACTGTAGGCCTCTCAGAGAGCAGTGACCCCCTGGAGCTGGTGGTGACAGGAGCCTACAGCAAACCC 375
|.|||.||||||.|||||.|||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 593 GTAGCGACACTGCAGGCCGCTCAGAGAGCAGTGACCCCCTGGAGCTGGTGGTGACAGGAGCCTACATCAAACCC 666
Query 376 ACCCTCTCAGCTCTGCCCAGCCCTGTGGTGACCTCAGGAGGGAATGTGACCATCCAGTGTGACTCACAGGTGGC 449
|||||||||||.|.|||||||||.|||||||.|||||||||||||||.|||.||||||||||||||||||||||
Sbjct 667 ACCCTCTCAGCCCAGCCCAGCCCCGTGGTGAACTCAGGAGGGAATGTAACCCTCCAGTGTGACTCACAGGTGGC 740
Query 450 ATTTGATGGCTTCATTCTGTGTAAGGAAGGAGAAGATGAACACCCACAATGCCTGAACTCCCATTCCCATGCCC 523
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||..|||||||||
Sbjct 741 ATTTGATGGCTTCATTCTGTGTAAGGAAGGAGAAGATGAACACCCACAATGCCTGAACTCCCAGCCCCATGCCC 814
Query 524 GTGGGTCATCCCGGGCCATCTTCTCCGTGGGCCCCGTGAGCCCAAGTCGCAGGTGGTCGTACAGGTGCTATGGT 597
|||||||.|||||.|||||||||||||||||||||||||||||.|||||||||||||.||||||||||||||.|
Sbjct 815 GTGGGTCGTCCCGCGCCATCTTCTCCGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTGGTACAGGTGCTATGCT 888
Query 598 TATGACTCGCGCGCTCCCTATGTGTGGTCTCTACCCAGTGATCTCCTGGGGCTCCTGGTCCCAGGTGTTTCTAA 671
|||||||||..|.|||||||||.||||||||||||||||||||||||||.|||||||||||.||||||||||||
Sbjct 889 TATGACTCGAACTCTCCCTATGAGTGGTCTCTACCCAGTGATCTCCTGGAGCTCCTGGTCCTAGGTGTTTCTAA 962
Query 672 GAAGCCATCACTCTCAGTGCAGCCGGGTCCTGTCGTGGCCCCTGGGGAGAAGCTGACCTTCCAGTGTGGCTCTG 745
||||||||||||||||||||||||.||||||.||||||||||||.|||||..|||||..|.|||||||||||||
Sbjct 963 GAAGCCATCACTCTCAGTGCAGCCAGGTCCTATCGTGGCCCCTGAGGAGACCCTGACTCTGCAGTGTGGCTCTG 1036
Query 746 ATGCCGGCTACGACAGATTTGTTCTGTACAAGGAGTGGGGACGTGACTTCCTCCAGCGCCCTGGCCGGCAGCCC 819
||||.||||||.||||||||||||||||.|||||..|||.||||||||||||.||||.|.|||||...||||||
Sbjct 1037 ATGCTGGCTACAACAGATTTGTTCTGTATAAGGACGGGGAACGTGACTTCCTTCAGCTCGCTGGCGCACAGCCC 1110
Query 820 CAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCTACGGGGGCCAGTACACATGCTC 893
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.
Sbjct 1111 CAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCTACGGGGGCCAGTACAGATGCTA 1184
Query 894 CGGTGCATACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGGACATCCTGATCACAGGACA-GATC 966
|||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||..| ||.|
Sbjct 1185 CGGTGCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGGACATCCTGATCGCAGGTGAGGAGC 1258
Query 967 CGTGC-----CA------GACCCTTCCTC-------TCCGTG-----------CGGCCGGGCCCCACAGTGGCC 1011
|..|| || |||||...||| .||.|| |.||||||||||||.||||||
Sbjct 1259 CCAGCGGGTTCAGTCAGGGACCCAGGCTCCGCACAGGCCCTGCCGGGGGAGCTCAGCCGGGCCCCACGGTGGCC 1332
Query 1012 TCAGGAGAGAACGTGACCCTGCTGTGTCAGTCACAGGGAGGGATGCACACTTTCCTTTTGACCAAGGAGGGGGC 1085
|||||||||||||||||||||||||||||||||||||||.|||||||.|||||||||.||||||||||||||||
Sbjct 1333 TCAGGAGAGAACGTGACCCTGCTGTGTCAGTCACAGGGATGGATGCAAACTTTCCTTCTGACCAAGGAGGGGGC 1406
Query 1086 AGCTGATTCCCCGCTGCGTCTAAAATCAAAGCGCCAATCTCATAAGTACCAGGCTGAATTCCCCATGAGTCCTG 1159
|||||||..|||...||||||||.|||||.|..|||||||||.||.|||||||||||||||||||||.||||||
Sbjct 1407 AGCTGATGACCCATGGCGTCTAAGATCAACGTACCAATCTCAAAAATACCAGGCTGAATTCCCCATGGGTCCTG 1480
Query 1160 TGACCTCGGCCCACGCGGGGACCTACAGGTGCTAC--------GGCTCACTCAGCTC-----CAAC---CCCTA 1217
|||||||.|||||.||||||||||||||| || ||| |.|||||| |||| |||.|
Sbjct 1481 TGACCTCAGCCCATGCGGGGACCTACAGG----ACCGTCTGGGGGC---CCCAGCTCCCCGACAACAGGCCCCA 1547
Query 1218 CCT-----------GCTGA----------CTCACCCC-----AGT--GACCCCCTGGAGCTCGTGGTCTCAGGA 1263
||| .|||| |||||||| .|| ||.||||.| .||||||| .|||
Sbjct 1548 CCTCCACATCTGGCCCTGAGGACCAGCCCCTCACCCCCACCGGGTCGGATCCCCAG-----AGTGGTCT-GGGA 1615
Query 1264 --GCAGCTGAG---------------------------------AC-------------------------CCT 1277
|||.|||.| || |||
Sbjct 1616 AGGCACCTGGGGGTTGTGATCGGCATCTTGGTGGCCGTCATCCTACTGCTCCTCCTCCTCCTCCTCCTCTTCCT 1689
Query 1278 CAGCCCACCACA-------------AAACA----AGTCCGACTCC-----AAGGCTG----------------- 1312
||.||..|.||| ||||| |...|||| || |||||||
Sbjct 1690 CATCCTCCGACATCGACGTCAGGGCAAACACTGGACATCGAC-CCAGAGAAAGGCTGATTTCCAACATCCTGCA 1762
Query 1313 ------GTGAG--------------------------------------------------------------- 1317
|||.|
Sbjct 1763 GGGGCTGTGGGGCCAGAGCCCACAGACAGAGGCCTGCAGTGGAGGTCCAGCCCAGCTGCCGATGCCCAGGAAGA 1836
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1837 AAACCTCTATGCTGCCGTGAAGCACACACAGCCTGAGGATGGGGTGGAGATGGACACTCGGCAGAGCCCACACG 1910
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1911 ATGAAGACCCCCAGGCAGTGACGTATGCCGAGGTGAAACACTCCAGACCTAGGAGAGAAATGGCCTCTCCTCCT 1984
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1985 TCCCCACTGTCTGGGGAATTCCTGGACACAAAGGACAGACAGGCGGAAGAGGACAGGCAGATGGACACTGAGGC 2058
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2059 TGCTGCATCTGAAGCCCCCCAGGATGTGACCTACGCCCAGCTGCACAGCTTGACCCTCAGACGGGAGGCAACTG 2132
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2133 AGCCTCCTCCATCCCAGGAAGGGCCCTCTCCAGCTGTGCCCAGCATCTACGCCACTCTGGCCATCCACTAGCCC 2206
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2207 AGGGGGGGACGCAGACCCCACACTCCATGGAGTCTGGAATGCATGGGAGCTGCCCCCCCAGTGGACACCATTGG 2280
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2281 ACCCCACCCAGCCTGGATCTACCCCAGGAGACTCTGGGAACTTTTAGGGGTCACTCAATTCTGCAGTATAAATA 2354
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2355 ACTAATGTCTCTACAATTTTGAAATAAAGCAACAGACTTCTCAATAATCAATGAAGTAGCTGAGAAAACTAAGT 2428
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2429 CAGAAAGTGCATTAAACTGAATCACAATGTAAATATTACACATCAAGCGATGAAACTGGAAAACTACAAGCCAC 2502
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2503 GAATGAATGAATTAGGAAAGAAAAAAAGTAGGAAATGAATGATCTTGGCTTTCCTATAAGAAATTTAGGGCAGG 2576
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2577 GCACGGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGTTCAGGAGATCGA 2650
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2651 GACCATCTTGGCCAACATGGTGAAACCCTGTCTCTCCTAAAAATACAAAAATTAGCTGGATGTGGTGGCAGTGC 2724
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2725 CTGTAATCCCAGCTATTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCAGGGAGTCAGAGGTTTCAGTGAGCC 2798
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2799 AAGATCGCACCACTGCTCTCCAGCCTGGCGACAGAGGGAGACTCCATCTCAAATTAAAAAAAAAAAAAAAAAAG 2872
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2873 AAAGAAAAAGAGAAAAAAGAAATTTAGAAGAATAACAAGTTATTCCAAATGAAGGCGTAAGAAAGGGAATAATA 2946
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2947 ACAATAATAAGAGGAGTTGTTCATGAGGAAAAACCAAAGCTTGAAAATTCAACAAAGCCAGTGAAGCTCATTCT 3020
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3021 TGAAAACATGAATCACACTCATGAATTCTAACTACAATGAAAAAGAGAAAGAAAGAGCAGGCATGCATTTCCAT 3094
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3095 ATGGGAGTGAGCCAGCAGACAGCCCTACAGATCGTACACACGTTTTCCAAAACTAACAATGGAACAGGCGGCAA 3168
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3169 ACCTATGCCAATATACTAGAAATTGCAGATTAAATAGATGAAATATTCTAAACTGGAGTTTACATAATGAACAT 3242
Query 1318 -------- 1317
Sbjct 3243 AAGAGTAA 3250
