Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07730
- Subject:
- XR_001753590.2
- Aligned Length:
- 3278
- Identities:
- 1214
- Gaps:
- 1905
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTTTTCTTCCCTATTTCCCTGCATTTCTCTTCTGTGCTCACTGCCACACGCAGCTCAGCCTGGGCGGCACAGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGATGCGAGATGCGTCTCTGCTGATCTGAGTCTGCCTGCAGCATGGACCTGGGTCTTCCCTGAAGCATCTCCAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGCTGGAGGGACGACTGCCATGATGACAGCACCCCATGAGAAGAAGGACCCAGCCTCCGATTGGCCACACTCTG 222
Query 1 ---------------------------------------------------------------------ATGAC 5
|||||
Sbjct 223 TGTGTCTCTCTATCCTGCCAGCACCGAGGGCTCATCCATCCACAGAGCAGGGCAGTGGGAGGAGACGCCATGAC 296
Query 6 CCCCATCCTCACGGTCCTGATCTGTCTCGGGCTGAGTCTGGGCCCCAGGACCCACGTGCAGGCAGGGCACCTCC 79
||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct 297 CCCCATCCTCACGGTCCTGATCTGTCTCGGGCTGAGTCTGGGCCCCCGGACCCACGTGCAGGCAGGGCACCTCC 370
Query 80 CCAAGCCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCATCCAGGGAAGTCCTGTGACCCTCAGGTGTCAGGGG 153
||||||||||||||||||||||.||||||||||||||||.||||||.|||||||||||||||||||||||||||
Sbjct 371 CCAAGCCCACCCTCTGGGCTGAACCAGGCTCTGTGATCACCCAGGGGAGTCCTGTGACCCTCAGGTGTCAGGGG 444
Query 154 AGCCTTCAGGCTGAGGAGTACCATCTATATAGGGAAAACAAATCAGCATCCTGGGTTAGACGGAT---ACAAGA 224
.|||...||.|..|||||||||.|||||||||.|||||.|||.|||||.|||||.|||.|||||| |||.||
Sbjct 445 GGCCAGGAGACCCAGGAGTACCGTCTATATAGAGAAAAGAAAACAGCACCCTGGATTACACGGATCCCACAGGA 518
Query 225 GCCTGGGAAGAATGGCCAGTTCCCCATCCCATCCATCACCTGGGAACACGCAGGGCGGTATCACTGTCAGTACT 298
||.||.||||||.||||||||||||||||||||||||||||||||||||.||||||||||||.|||| ||||
Sbjct 519 GCTTGTGAAGAAGGGCCAGTTCCCCATCCCATCCATCACCTGGGAACACACAGGGCGGTATCGCTGT---TACT 589
Query 299 A---CAGCCACAATCACT-CA------TCAGAGTACAGTGACCCCCTGGAGCTGGTGGTGACAGGAGCCTACAG 362
| .|||.| |||| || ||||||..||||||||||||||||||||||||||||||||||||||.
Sbjct 590 ATGGTAGCGA----CACTGCAGGCCGCTCAGAGAGCAGTGACCCCCTGGAGCTGGTGGTGACAGGAGCCTACAT 659
Query 363 CAAACCCACCCTCTCAGCTCTGCCCAGCCCTGTGGTGACCTTAGGAGGGAACGTGACCCTCCAGTGTGTCTCAC 436
||||||||||||||||||.|.|||||||||.|||||||.||.|||||||||.||.|||||||||||||.|||||
Sbjct 660 CAAACCCACCCTCTCAGCCCAGCCCAGCCCCGTGGTGAACTCAGGAGGGAATGTAACCCTCCAGTGTGACTCAC 733
Query 437 AGGTGGCATTTGACGGCTTCATTCTGTGTAAGGAAGGAGAAGATGAACACCCACAACGCCTGAACTCCCATTCC 510
|||||||||||||.||||||||||||||||||||||||||||||||||||||||||.|||||||||||||..||
Sbjct 734 AGGTGGCATTTGATGGCTTCATTCTGTGTAAGGAAGGAGAAGATGAACACCCACAATGCCTGAACTCCCAGCCC 807
Query 511 CATGCCCGTGGGTGGTCCTGGGCCATCTTCTCCGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTCGTACAGGTG 584
|||||||||||||.||||.|.|||||||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 808 CATGCCCGTGGGTCGTCCCGCGCCATCTTCTCCGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTGGTACAGGTG 881
Query 585 CTATGCTTATGACTCGAACTCTCCCTATGTGTGGTCTCTACCCAGTGATCTCCTGGAGCTCCTGGTCCCAGGTG 658
|||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 882 CTATGCTTATGACTCGAACTCTCCCTATGAGTGGTCTCTACCCAGTGATCTCCTGGAGCTCCTGGTCCTAGGTG 955
Query 659 TTTCTAAGAAGCCATCACTCTCAGTGCAGCCAGGTCCTATGGTGGCCCCTGGGGAGAGCCTGACCCTCCAGTGT 732
||||||||||||||||||||||||||||||||||||||||.||||||||||.|||||.||||||.||.||||||
Sbjct 956 TTTCTAAGAAGCCATCACTCTCAGTGCAGCCAGGTCCTATCGTGGCCCCTGAGGAGACCCTGACTCTGCAGTGT 1029
Query 733 GTCTCTGATGTCGGCTACGACAGATTTGTTCTGTATAAGGAGGGAGAACGTGACTTCCTCCAGCGCCCTGGTTG 806
|.||||||||..||||||.||||||||||||||||||||||.||.||||||||||||||.||||.|.||||...
Sbjct 1030 GGCTCTGATGCTGGCTACAACAGATTTGTTCTGTATAAGGACGGGGAACGTGACTTCCTTCAGCTCGCTGGCGC 1103
Query 807 GCAGCCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCCCTCCCACGGGGGCCAGTACA 880
.||||||||||||||||||||||||||||||||||||||||||||||||||||.||||.|||||||||||||||
Sbjct 1104 ACAGCCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCTACGGGGGCCAGTACA 1177
Query 881 GATGCTACAGTGCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGTGACCCCCTGGACATCCTGATCACAGGA 954
||||||||.|||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||.||||.
Sbjct 1178 GATGCTACGGTGCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGGACATCCTGATCGCAGGT 1251
Query 955 CA------------GTTCTATGACAGACCC-------------TCTCTCTCGGTG-----CAGCCGGTCCCCAC 998
.| ||||..|.|..||||| .|.||..|||.| |||||||.||||||
Sbjct 1252 GAGGAGCCCAGCGGGTTCAGTCAGGGACCCAGGCTCCGCACAGGCCCTGCCGGGGGAGCTCAGCCGGGCCCCAC 1325
Query 999 AGTAGCCCCAGGAAAGAACGTGACCCTGCTGTGTCAGTCACGGGGGCAGTTCCACACTTTCCTTCTGACCAAGG 1072
.||.|||.|||||.|||||||||||||||||||||||||||.|||...|.|.||.|||||||||||||||||||
Sbjct 1326 GGTGGCCTCAGGAGAGAACGTGACCCTGCTGTGTCAGTCACAGGGATGGATGCAAACTTTCCTTCTGACCAAGG 1399
Query 1073 AGGGGGCAGGCCATCCCCCACTGCATCTGAGATCAGAGCACCAAGCTCAGCAGAACCAGGCTGAATTCCGCATG 1146
|||||||||...||..||||..||.|||.||||||..|.|||||.||||..|..|||||||||||||||.||||
Sbjct 1400 AGGGGGCAGCTGATGACCCATGGCGTCTAAGATCAACGTACCAATCTCAAAAATACCAGGCTGAATTCCCCATG 1473
Query 1147 GGTCCTGTGACCTCAGCCCACGTGGGGACCTACA----------GATGCTACAGCTCAC-----TCAGCTCCAA 1205
||||||||||||||||||||.|.||||||||||| |..||..||||||.| .|||..||.|
Sbjct 1474 GGTCCTGTGACCTCAGCCCATGCGGGGACCTACAGGACCGTCTGGGGGCCCCAGCTCCCCGACAACAGGCCCCA 1547
Query 1206 CCCCTAC--CTGCTGTCTCT---------CCCCAGTGACCCCC-------TGGAGCTC----GTGGTC------ 1251
||.|.|| ||||.|.|.|| |||| |.|||||| .|||.|.| ||||||
Sbjct 1548 CCTCCACATCTGCAGGCCCTGAGGACCAGCCCC--TCACCCCCACCGGGTCGGATCCCCAGAGTGGTCTGGGAA 1619
Query 1252 ------------------TCAGCATC--------------CCTA------------------------------ 1263
||.||||| ||||
Sbjct 1620 GGCACCTGGGGGTTGTGATCGGCATCTTGGTGGCCGTCATCCTACTGCTCCTCCTCCTCCTCCTCCTCTTCCTC 1693
Query 1264 ---------------------GGCCAACAC---------CCCCAG---------GATTACACAGTGGAGAATCT 1298
|||.||||| .||||| ||||.|..|
Sbjct 1694 ATCCTCCGACATCGACGTCAGGGCAAACACTGGACATCGACCCAGAGAAAGGCTGATTTCCAA----------- 1756
Query 1299 CATCC-GCATGGG-TGTGGCTGGCTTGGTCC-------------------TGGTGGTC---------------- 1335
||||| |||.||| ||||| |||..|..|| |||.||||
Sbjct 1757 CATCCTGCAGGGGCTGTGG--GGCCAGAGCCCACAGACAGAGGCCTGCAGTGGAGGTCCAGCCCAGCTGCCGAT 1828
Query 1336 -CTCGGG------------ATTCTGCTATTTGAGGCTCAGCACAGCCAGAG----------------------- 1373
|.|.|| ||.|||| ..|||.||.|| |||||||.|||
Sbjct 1829 GCCCAGGAAGAAAACCTCTATGCTGC--CGTGAAGCACA-CACAGCCTGAGGATGGGGTGGAGATGGACACTCG 1899
Query 1374 ---AAGCCTACAAGATGCAG-CCGGGAGG--------------------------------------------- 1398
.||||.|||.||||.|| ||...|||
Sbjct 1900 GCAGAGCCCACACGATGAAGACCCCCAGGCAGTGACGTATGCCGAGGTGAAACACTCCAGACCTAGGAGAGAAA 1973
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1974 TGGCCTCTCCTCCTTCCCCACTGTCTGGGGAATTCCTGGACACAAAGGACAGACAGGCGGAAGAGGACAGGCAG 2047
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2048 ATGGACACTGAGGCTGCTGCATCTGAAGCCCCCCAGGATGTGACCTACGCCCAGCTGCACAGCTTGACCCTCAG 2121
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2122 ACGGGAGGCAACTGAGCCTCCTCCATCCCAGGAAGGGCCCTCTCCAGCTGTGCCCAGCATCTACGCCACTCTGG 2195
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2196 CCATCCACTAGCCCAGGGGGGGACGCAGACCCCACACTCCATGGAGTCTGGAATGCATGGGAGCTGCCCCCCCA 2269
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2270 GTGGACACCATTGGACCCCACCCAGCCTGGATCTACCCCAGGAGACTCTGGGAACTTTTAGGGGTCACTCAATT 2343
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2344 CTGCAGTATAAATAACTAATGTCTCTACAATTTTGAAATAAAGCAACAGACTTCTCAATAATCAATGAAGTAGC 2417
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2418 TGAGAAAACTAAGTCAGAAAGTGCATTAAACTGAATCACAATGTAAATATTACACATCAAGCGATGAAACTGGA 2491
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2492 AAACTACAAGCCACGAATGAATGAATTAGGAAAGAAAAAAAGTAGGAAATGAATGATCTTGGCTTTCCTATAAG 2565
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2566 AAATTTAGGGCAGGGCACGGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGA 2639
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2640 GTTCAGGAGATCGAGACCATCTTGGCCAACATGGTGAAACCCTGTCTCTCCTAAAAATACAAAAATTAGCTGGA 2713
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2714 TGTGGTGGCAGTGCCTGTAATCCCAGCTATTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCAGGGAGTCAGA 2787
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2788 GGTTTCAGTGAGCCAAGATCGCACCACTGCTCTCCAGCCTGGCGACAGAGGGAGACTCCATCTCAAATTAAAAA 2861
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2862 AAAAAAAAAAAAAGAAAGAAAAAGAGAAAAAAGAAATTTAGAAGAATAACAAGTTATTCCAAATGAAGGCGTAA 2935
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2936 GAAAGGGAATAATAACAATAATAAGAGGAGTTGTTCATGAGGAAAAACCAAAGCTTGAAAATTCAACAAAGCCA 3009
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3010 GTGAAGCTCATTCTTGAAAACATGAATCACACTCATGAATTCTAACTACAATGAAAAAGAGAAAGAAAGAGCAG 3083
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3084 GCATGCATTTCCATATGGGAGTGAGCCAGCAGACAGCCCTACAGATCGTACACACGTTTTCCAAAACTAACAAT 3157
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3158 GGAACAGGCGGCAAACCTATGCCAATATACTAGAAATTGCAGATTAAATAGATGAAATATTCTAAACTGGAGTT 3231
Query 1399 ---------------------- 1398
Sbjct 3232 TACATAATGAACATAAGAGTAA 3253
