Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07768
- Subject:
- NM_001276293.2
- Aligned Length:
- 4549
- Identities:
- 1678
- Gaps:
- 2837
Alignment
Query 1 ATGGCGACCGCGCGCACCTTCGGGCCCGAGCGGGAAGCCGAGCCGGCCAAGGAAGCGCGCGTCGTGGGCTCGGA 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGACCGCGCGCACCTTCGGGCCCGAGCGGGAAGCCGAGCCGGCCAAGGAAGCGCGCGTCGTGGGCTCGGA 74
Query 75 GCTTGTGGACACTTATACGGTTTACATCATCCAGGTCACTGATGGCAGCCATGAGTGGACAGTAAAGCACCGCT 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GCTTGTGGACACTTATACGGTTTACATCATCCAGGTCACTGATGGCAGCCATGAGTGGACAGTAAAGCACCGCT 148
Query 149 ACAGCGACTTCCATGACCTGCATGAAAAGCTCGTTGCAGAGAGAAAGATTGATAAAAACCTGCTTCCGCCCAAA 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 149 ACAGCGACTTCCATGACCTGCATGAAAAGCTCGTTGCAGAGAGAAAGATTGATAAAAATCTGCTTCCGCCCAAA 222
Query 223 AAGATAATTGGGAAAAACTCAAGAAGCTTGGTGGAGAAGAGGGAGAAGGATCTGGAGGTCTACCTCCAGAAGCT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AAGATAATTGGGAAAAACTCAAGAAGCTTGGTGGAGAAGAGGGAGAAGGATCTGGAGGTCTACCTCCAGAAGCT 296
Query 297 CCTGGCTGCCTTCCCTGGCGTGACCCCCAGAGTACTGGCCCACTTCTTGCATTTTCACTTCTATGAGATAAATG 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CCTGGCTGCCTTCCCTGGCGTGACCCCCAGAGTACTGGCCCACTTCTTGCATTTTCACTTCTATGAGATAAATG 370
Query 371 GCATCACCGCGGCACTGGCTGAAGAGCTCTTTGAGAAAGGAGAACAGCTCCTGGGGGCCGGCGAGGTCTTTGCC 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GCATCACCGCGGCACTGGCTGAAGAGCTCTTTGAGAAAGGAGAACAGCTCCTGGGGGCCGGCGAGGTCTTTGCC 444
Query 445 ATTGGACCCCTGCAGCTGTATGCCGTCACGGAGCAGCTGCAGCAGGGAAAGCCCACGTGCGCCAGTGGGGATGC 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ATTGGACCCCTGCAGCTGTATGCCGTCACGGAGCAGCTGCAGCAGGGAAAGCCCACGTGCGCCAGTGGGGATGC 518
Query 519 CAAGACCGACCTCGGGCACATCCTGGACTTCACCTGTCGCCTTAAGTACCTTAAGGTTTCTGGCACAGAAGGAC 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CAAGACCGACCTCGGGCACATCCTGGACTTCACCTGTCGCCTTAAGTACCTTAAGGTTTCTGGCACAGAAGGAC 592
Query 593 CTTTTGGGACCAGCAACATTCAGGAGCAGCTCCTGCCGTTCGACCTATCAATATTCAAGTCCCTGCATCAGGTG 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTTTTGGGACCAGCAACATTCAGGAGCAGCTCCTGCCGTTCGACCTATCAATATTCAAGTCCCTGCATCAGGTG 666
Query 667 GAGATAAGTCACTGTGATGCTAAGCACATCAGAGGGCTGGTCGCATCGAAGCCCACCTTAGCCACGCTGAGTGT 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GAGATAAGTCACTGTGATGCTAAGCACATCAGAGGGCTGGTCGCATCGAAGCCCACCTTAGCCACGCTGAGTGT 740
Query 741 CCGCTTCTCAGCAACCTCGATGAAGGAAGTCCTTGTTCCTGAAGCCTCAGAATTTGATGAGTGGGAGCCTGAAG 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CCGCTTCTCAGCAACCTCGATGAAGGAAGTCCTTGTTCCTGAAGCCTCAGAATTTGATGAGTGGGAGCCTGAAG 814
Query 815 GCACAACCCTAGAAGGCCCTGTGACTGCCGTCATCCCCACTTGGCAGGCATTGACCACGCTTGACCTGAGCCAC 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GCACAACCCTAGAAGGCCCTGTGACTGCCGTCATCCCCACTTGGCAGGCATTGACCACGCTTGACCTGAGCCAC 888
Query 889 AACAGCATCTCCGAGATCGACGAGTCTGTGAAACTGATCCCAAAGATTGAGTTCCTGGACCTGAGTCACAATGG 962
||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AACAGCGTCTCCGAGATCGACGAGTCTGTGAAACTGATCCCAAAGATTGAGTTCCTGGACCTGAGTCACAATGG 962
Query 963 ATTGCTGGTTGTGGACAATCTGCAGCACCTGTATAACCTTGTGCATCTGGACCTGTCCTACAACAAGCTCTCCT 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ATTGCTGGTTGTGGACAATCTGCAGCACCTGTATAACCTTGTGCATCTGGACCTGTCCTACAACAAGCTCTCCT 1036
Query 1037 CCTTGGAAGGGCTTCACACCAAGCTGGGGAACATCAAGACCTTAAACCTGGCAGGCAACCTCCTAGAGAGTCTG 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCTTGGAAGGGCTTCACACCAAGCTGGGGAACATCAAGACCTTAAACCTGGCAGGCAACCTCCTAGAGAGTCTG 1110
Query 1111 AGTGGCCTGCACAAGCTCTACTCACTGGTCAACCTGGATCTCCGGGACAACAGGATCGAACAGATGGAGGAGGT 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AGTGGCCTGCACAAGCTCTACTCACTGGTCAACCTGGATCTCCGGGACAACAGGATCGAACAGATGGAGGAGGT 1184
Query 1185 CCGGAGCATAGGCAGCCTCCCGTGTCTGGAGCACGTGTCTCTGCTGAACAACCCTCTGAGCATCATCCCCGACT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CCGGAGCATAGGCAGCCTCCCGTGTCTGGAGCACGTGTCTCTGCTGAACAACCCTCTGAGCATCATCCCCGACT 1258
Query 1259 ACCGGACCAAGGTGCTGGCTCAGTTCGGAGAGAGGGCCTCAGAGGTCTGTCTGGATGACACAGTGACCACAGAG 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ACCGGACCAAGGTGCTGGCTCAGTTCGGAGAGAGGGCCTCAGAGGTCTGTCTGGATGACACAGTGACCACAGAG 1332
Query 1333 AAGGAGCTGGACACTGTGGAAGTGCTGAAAGCAATTCAGAAAGCCAAGGAGGTCAAGTCCAAACTGAGCAACCC 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AAGGAGCTGGACACTGTGGAAGTGCTGAAAGCAATTCAGAAAGCCAAGGAGGTCAAGTCCAAACTGAGCAACCC 1406
Query 1407 AGAGAAGAAGGGTGGTGAAGACTCCCGGCTCTCAGCTGCCCCCTGCATCAGACCCAGCAGCTCCCCTCCCACTG 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 AGAGAAGAAGGGTGGTGAAGACTCCCGGCTCTCAGCTGCCCCCTGCATCAGACCCAGCAGCTCCCCTCCCACTG 1480
Query 1481 TGGCTCCCGCATCTGCCTCCCTGCCCCAGCCCATCCTCTCTAACCAAGG-AATCATGT-----TCGTTCAGGAG 1548
||||||||||||||||||||||||||||||||||||||||||||||||| ||||.||| ||.|
Sbjct 1481 TGGCTCCCGCATCTGCCTCCCTGCCCCAGCCCATCCTCTCTAACCAAGGTAATCGTGTATGTATCTT------- 1547
Query 1549 GAGGCCCTGGCCAGCAGCCTCTCGT----CCACTGACAGTCTGACT-CCCGAGCACCAGCCCATTGCCCAGGGA 1617
||.|||.|| |||| ||||.| || ||.|.|| |||..||.
Sbjct 1548 ----------------GCTTCTAGTGGAGCCAC--ACAGCC---CTGCCTGGGC------------CCCCTGGC 1588
Query 1618 TGTTCTGATTCCTTGGAGTCCATCCCTGCGGGACAGGCAGCTTCCGATGATTTAAGGGACGTGCCAGGAGCTGT 1691
||..| |||.|| ||.|||| ||.|||||||.|.|||.
Sbjct 1589 TGGGC--------TGGGGT-------TGGGGGA------------------------GAGGTGCCAGCACCTGC 1623
Query 1692 TGGTGGTGCAAGCCCAGAACATGCCGAGCCGGAGGTC---CAGGTGGTGCCGGGGTCTGGCCAGATCATCTTCC 1762
| |.||| ||| |||| || |.||| .||.|||
Sbjct 1624 T-----TCCAA---CAG----------------GGTCAGACA-------CAGGG---AGGGCAG---------- 1653
Query 1763 TGCCCTTCACCTGCATTGGCT-----------------ACACGGCCACCAATCAGGACTTCATCCAGCGCCTGA 1819
||||.| ||||| |||| |||.|| |||| .|.|||||
Sbjct 1654 TGCCTT----CTGCA--GGCTGGTCCTCGCGGGGGGACACATGG--------CAGG---------GGTGCCTG- 1703
Query 1820 GCACACTGATCCGGCAGGCCATCGAGCGGCAGCTGCCTGCCTGGATCGAGG-CTGCCAA-----CCAGCGGGAG 1887
|| ||||| |||| ||.|.|||.|||.||| .|||| ||.|||| |
Sbjct 1704 GC---CTGAT-------GCCA-------GCTGTTGCTTGCTTGG--TGAGGACTCCCAATTGCTC--------- 1749
Query 1888 GAGGGCCAGGGTGAACAGGGCGAGGAGGAGGATGAGGAGGAGGAAGAAGAGGAGGACGTGGCTGAGAACCGCTA 1961
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 1962 CTTTGAAATGGGGCCCCCAGACGTGGAGGAGGAGGAGGGAGGAGGCCAGGGGGAGGAAGAGGAGGAGGAAGAGG 2035
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 2036 AGGATGAAGAGGCCGAGGAGGAGCGCCTGGCTCTGGAATGGGCCCTGGGCGCGGACGAGGACTTCCTGCTGGAG 2109
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 2110 CACATCCGCATCCTCAAGGTGCTGTGGTGCTTCCTGATCCATGTGCAGGGCAGTATCCGCCAGTTCGCCGCCTG 2183
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 2184 CCTTGTGCTCACCGACTTCGGCATCGCAGTCTTCGAGATCCCGCACCAGGAGTCTCGGGGCAGCAGCCAGCACA 2257
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 2258 TCCTCTCCTCCCTGCGCTTTGTCTTTTGCTTCCCGCATGGCGACCTCACCGAGTTTGGCTTCCTCATGCCGGAG 2331
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 2332 CTGTGTCTGGTGCTCAAGGTACGGCACAGTGAGAACACGCTCTTCATTATCTCGGACGCCGCCAACCTGCACGA 2405
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 2406 GTTCCACGCGGACCTGCGCTCATGCTTTGCACCCCAGCACATGGCCATGCTGTGTAGCCCCATCCTCTACGGCA 2479
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 2480 GCCACACCAGCCTGCAGGAGTTCCTGCGCCAGCTGCTCACCTTCTACAAGGTGGCTGGCGGCTGCCAGGAGCGC 2553
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 2554 AGCCAGGGCTGCTTCCCCGTCTACCTGGTCTACAGTGACAAGCGCATGGTGCAGACGGCCGCCGGGGACTACTC 2627
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 2628 AGGCAACATCGAGTGGGCCAGCTGCACACTCTGTTCAGCCGTGCGGCGCTCCTGCTGCGCGCCCTCTGAGGCCG 2701
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 2702 TCAAGTCCGCCGCCATCCCCTACTGGCTGTTGCTCACGCCCCAGCACCTCAACGTCATCAAGGCCGACTTCAAC 2775
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 2776 CCCATCCCCAACCGTGGCACCCACAACTGTCGCAACCGCAACAGCTTCAAGCTCAGCCGTGTGCCGCTCTCCAC 2849
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 2850 CGTGCTGCTGGACCCCACACGCAGCTGTACCCAGCCTCGGGGCGCCTTTGCTGATGGCCACGTGCTAGAGCTGC 2923
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 2924 TCGTGGGGTACCGCTTTGTCACTGCCATCTTCGTGCTGCCCCACGAGAAGTTCCACTTCCTGCGCGTCTACAAC 2997
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 2998 CAGCTGCGGGCCTCGCTGCAGGACCTGAAGACTGTGGTCATCGCCAAGACCCCCGGGACGGGAGGCAGCCCCCA 3071
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 3072 GGGCTCCTTTGCGGATGGCCAGCCTGCCGAGCGCAGGGCCAGCAATGACCAGCGTCCCCAGGAGGTCCCAGCAG 3145
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 3146 AGGCTCTGGCCCCGGCCCCAGTGGAAGTCCCAGCTCCAGCCCCTGCAGCAGCCTCAGCCTCAGGCCCAGCGAAG 3219
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 3220 ACTCCGGCCCCAGCAGAGGCCTCAACTTCAGCTTTGGTCCCAGAGGAGACGCCAGTGGAAGCTCCAGCCCCACC 3293
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 3294 CCCAGCCGAGGCCCCTGCCCAGTACCCGAGTGAGCACCTCATCCAGGCCACCTCGGAGGAGAATCAGATCCCCT 3367
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 3368 CGCACTTGCCTGCCTGCCCGTCGCTCCGGCACGTCGCCAGCCTGCGGGGCAGCGCCATCATCGAGCTCTTCCAC 3441
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 3442 AGCAGCATTGCTGAGGTTGAAAACGAGGAGCTGAGGCACCTCATGTGGTCCTCGGTGGTGTTCTACCAGACCCC 3515
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 3516 AGGGCTGGAGGTGACTGCCTGCGTGCTGCTCTCCACCAAGGCTGTGTACTTTGTGCTCCACGACGGCCTCCGCC 3589
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 3590 GCTACTTCTCAGAGCCACTGCAGGATTTCTGGCATCAGAAAAACACCGACTACAACAACAGCCCTTTCCACATC 3663
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 3664 TCCCAGTGCTTCGTGCTAAAGCTTAGTGACCTGCAGTCAGTCAATGTGGGGCTTTTCGACCAGCATTTCCGGCT 3737
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 3738 GACGGGTTCCACCCCGATGCAGGTGGTCACGTGCTTGACGCGGGACAGCTACCTGACGCACTGCTTCCTCCAGC 3811
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 3812 ACCTCATGGTCGTGCTGTCCTCTCTGGAACGCACGCCCTCGCCGGAGCCTGTTGACAAGGACTTCTACTCCGAG 3885
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 3886 TTTGGGAACAAGACCACAGGGAAGATGGAGAACTACGAGCTGATCCACTCTAGTCGCGTCAAGTTTACCTACCC 3959
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 3960 CAGTGAGGAGGAGATTGGGGACCTGACGTTCACTGTGGCCCAAAAGATGGCTGAGCCAGAGAAGGCCCCAGCCC 4033
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 4034 TCAGCATCCTGCTGTACGTGCAGGCCTTCCAGGTGGGCATGCCACCCCCTGGGTGCTGCAGGGGCCCCCTGCGC 4107
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 4108 CCCAAGACACTCCTGCTCACCAGCTCCGAGATCTTCCTCCTGGATGAGGACTGTGTCCACTACCCACTGCCCGA 4181
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 4182 GTTTGCCAAAGAGCCGCCGCAGAGAGACAGGTACCGGCTGGACGATGGCCGCCGCGTCCGGGACCTGGACCGAG 4255
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 4256 TGCTCATGGGCTACCAGACCTACCCGCAGGCCCTCACCCTCGTCTTCGATGACGTGCAAGGTCATGACCTCATG 4329
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 4330 GGCAGTGTCACCCTGGACCACTTTGGGGAGGTGCCAGGTGGCCCGGCTAGAGCCAGCCAGGGCCGTGAAGTCCA 4403
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 4404 GTGGCAGGTGTTTGTCCCCAGTGCTGAGAGCAGAGAGAAGCTCATCTCGCTGTTGGCTCGCCAGTGGGAGGCCC 4477
Sbjct 1750 -------------------------------------------------------------------------- 1749
Query 4478 TGTGTGGCCGTGAGCTGCCTGTCGAGCTCACCGGC 4512
Sbjct 1750 ----------------------------------- 1749
