Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_07836
Subject:
XM_017317990.1
Aligned Length:
2412
Identities:
1788
Gaps:
399

Alignment

Query    1  ATG-------GGGCTCCCAG-CGCT--------CGAGTTCAGCGACTGCTGC-----------CTCGATAG---  44
            |||       ||.||.|||| .|||        |.||...|||.|||||.||           |..|||||   
Sbjct    1  ATGTCTCACAGGTCTTCCAGAGGCTTCCAGAGGCCAGAGAAGCCACTGCAGCATGAGTTACTTCAAGATAGCTG  74

Query   45  ------TCC-------GCACTTC-CGAGAGAC----------GCTCAAGTCG----------CACGAAG-----  79
                  |||       ||.|||| |..|||||          ||| ||| ||          |||  ||     
Sbjct   75  GGAGCCTCCACTGGCTGCTCTTCTCTTGAGACCACAGGAAATGCT-AAG-CGGGATGCTTGACAC--AGTTGGT  144

Query   80  ------CAGAGCTGGACAAGACC--------------------AACAAATTCAT---CAAGGA------GCTCA  118
                  ||| |||..|.|||.||                    ||.|||||..|   ||||.|      .||||
Sbjct  145  CACTCCCAG-GCTCCAAAAGTCCTGACTTCCCATCTCACACAGAAGAAATTGGTTTACAAGAACATTACTCTCA  217

Query  119  ------TCAAGGACGGGAAGTCACTCATAAGCG---------CGCT------CAAGAATTTGTCTTCAGCGAAG  171
                  |||     |.||||       .|||||         .|||      ||.|.||||||||||.||.|||
Sbjct  218  CCTACTTCA-----GAGAAG-------AAAGCGGGTATTTTTGGCTAAGGTACATGGATTTGTCTTCGGCAAAG  279

Query  172  CGGAAGTTTGCAGATTCCTTAAATGAATTTAAATTTCAGTGCATAGGAGATGCAGAAACAGATGATGAGATGTG  245
            |||||||||||||||||||||||||||||||||||||||||.|||||||||||.||||||||||||||||||||
Sbjct  280  CGGAAGTTTGCAGATTCCTTAAATGAATTTAAATTTCAGTGTATAGGAGATGCCGAAACAGATGATGAGATGTG  353

Query  246  TATAGCAAGGTCTTTGCAGGAGTTTGCCACTGTCCTCAGGAATCTTGAAGATGAACGGATACGGATGATTGAGA  319
            ||||||.||.||||||||.||.|||||..||||.|||||||||||||||||.||.||||..||.|||||.||||
Sbjct  354  TATAGCGAGATCTTTGCAAGAATTTGCTGCTGTTCTCAGGAATCTTGAAGACGAGCGGAGTCGAATGATCGAGA  427

Query  320  ATGCCAGCGAGGTGCTCATCACTCCCTTGGAGAAGTTTCGAAAGGAACAGATCGGGGCTGCCAAGGAAGCCAAA  393
            ||||||||||||||||||||||.|||||||||||||||||||||||.|||||.|||||.||||.||||||||||
Sbjct  428  ATGCCAGCGAGGTGCTCATCACACCCTTGGAGAAGTTTCGAAAGGAGCAGATTGGGGCCGCCAGGGAAGCCAAA  501

Query  394  AAGAAGTATGACAAAGAGACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTTGTCTTCCAAAAAGAA  467
            ||||||||||||||||||||.||.|||||.||.||||.||||||||||||.|||||||||||||||||||||||
Sbjct  502  AAGAAGTATGACAAAGAGACCGAGAAGTACTGCGGCACCTTAGAAAAACATTTGAATTTGTCTTCCAAAAAGAA  575

Query  468  AGAATCTCAGCTTCAGGAGGCAGACAGCCAAGTGGACCTGGTCCGGCAGCATTTCTATGAAGTATCCCTGGAAT  541
            .|||||.|||||.|||||||||||||||||||||||||||||.|||||.||||||||.||||||||||||||.|
Sbjct  576  GGAATCCCAGCTACAGGAGGCAGACAGCCAAGTGGACCTGGTTCGGCAACATTTCTACGAAGTATCCCTGGAGT  649

Query  542  ATGTCTTCAAGGTGCAGGAAGTCCAAGAGAGAAAGATGTTTGAGTTTGTGGAGCCTCTGCTGGCCTTCCTGCAA  615
            |||||||.||||||||||||||.||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct  650  ATGTCTTTAAGGTGCAGGAAGTGCAAGAGAGAAAGATGTTTGAGTTTGTAGAGCCTCTGCTGGCCTTCCTGCAA  723

Query  616  GGACTCTTCACTTTCTATCACCATGGTTACGAACTGGCCAAGGATTTCGGGGACTTCAAGACACAGTTAACCAT  689
            |||||||||||||||||||||||||||||.||.||||||||||||||.||.|||||.|||||||||||.|||||
Sbjct  724  GGACTCTTCACTTTCTATCACCATGGTTATGAGCTGGCCAAGGATTTTGGTGACTTTAAGACACAGTTGACCAT  797

Query  690  TAGCATACAGAACACAAGAAATCGCTTTGAAGGCACTAGATCAGAAGTGGAATCACTGATGAAAAAGATGAAGG  763
            .||||||||.||.||||||||.|||||||||||.||.||.||.||.||||||||.||||||||.||||||||||
Sbjct  798  CAGCATACAAAATACAAGAAACCGCTTTGAAGGAACCAGGTCTGAGGTGGAATCGCTGATGAAGAAGATGAAGG  871

Query  764  AGAATCCCCTTGAGCACAAGACCATCAGTCCCTACACCATGGAGGGATACCTCTACGTGCAGGAGAAACGTCAC  837
            |.||.|||||.|||||||||||||||||.||.|||||||||||.||.|||||.||||||||||||||.||||||
Sbjct  872  AAAACCCCCTGGAGCACAAGACCATCAGCCCGTACACCATGGAAGGGTACCTGTACGTGCAGGAGAAGCGTCAC  945

Query  838  TTTGGAACTTCTTGGGTGAAGCACTACTGTACATATCAACGGGATTCCAAACAAATCACCATGGTACCATTTGA  911
            |||||||||||.||||||||||||||||||||.||.|||||||||||||||||||||||||||||.|||||.||
Sbjct  946  TTTGGAACTTCCTGGGTGAAGCACTACTGTACCTACCAACGGGATTCCAAACAAATCACCATGGTTCCATTCGA  1019

Query  912  CCAAAAGTCAGGAGGAAAAGGGGGAGAAGATGAATCAGTTATCCTCAAATCCTGCACACGGCGGAAAACAGACT  985
            ||||||||||||||||||.|||||||||||.||.||.||||.|||||||||||||||||||||.||.|||||||
Sbjct 1020  CCAAAAGTCAGGAGGAAAGGGGGGAGAAGACGAGTCCGTTACCCTCAAATCCTGCACACGGCGAAAGACAGACT  1093

Query  986  CCATTGAGAAGAGGTTTTGCTTTGATGTGGAAGCAGTAGACAGGCCAGGGGTTATCACCATGCAAGCTTTGTCG  1059
            ||||.||||||.|.||.||||||||.||||||||||||||||||||||||||||||||||||||.||.||||||
Sbjct 1094  CCATCGAGAAGCGATTCTGCTTTGACGTGGAAGCAGTAGACAGGCCAGGGGTTATCACCATGCAGGCGTTGTCG  1167

Query 1060  GAAGAGGACCGGAGGCTCTGGATGGAAGCCATGGATGGCCGGGAACCTGTCTACAACTCGAACAAAGACAGCCA  1133
            |||||||||||.||||||||||||||||||||||||||||||||||||||.||||||||.||||.|||||||||
Sbjct 1168  GAAGAGGACCGTAGGCTCTGGATGGAAGCCATGGATGGCCGGGAACCTGTGTACAACTCCAACAGAGACAGCCA  1241

Query 1134  GAGTGAAGGGACTGCGCAGTTGGACAGCATTGGCTTCAGCATAATCAGGAAATGCATCCATGCTGTGGAAACCA  1207
            |||.||||||||.||.||.||||||||.||.||||||||||||||.|||||||||||||||||.|||||.||||
Sbjct 1242  GAGCGAAGGGACCGCACAATTGGACAGTATCGGCTTCAGCATAATAAGGAAATGCATCCATGCGGTGGAGACCA  1315

Query 1208  GAGGGATCAACGAGCAAGGGCTGTATCGAATTGTGGGGGTCAACTCCAGAGTGCAGAAGTTGCTGAGTGTCCTG  1281
            ||||||||||.|||||.|||||.||.|||||.|||||||||||||||||.|||||||||||||||||.||||||
Sbjct 1316  GAGGGATCAATGAGCAGGGGCTCTACCGAATCGTGGGGGTCAACTCCAGGGTGCAGAAGTTGCTGAGCGTCCTG  1389

Query 1282  ATGGACCCCAAGACTGCTTCTGAGACAGAAACAGATATCTGTGCTGAATGGGAGATAAAGACCATCACTAGTGC  1355
            |||||||||||..|.|||||||||||||||||.|||||||||||.||||||||||||||||||.||||.|||||
Sbjct 1390  ATGGACCCCAAAGCAGCTTCTGAGACAGAAACTGATATCTGTGCCGAATGGGAGATAAAGACCGTCACCAGTGC  1463

Query 1356  TCTGAAGACCTACCTAAGAATGCTTCCAGGACCACTCATGATGTACCAGTTTCAAAGAAGTTTCATCAAAGCAG  1429
            |||||||||||||||.||||||||.||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 1464  TCTGAAGACCTACCTGAGAATGCTCCCAGGACCCCTCATGATGTACCAGTTTCAAAGAAGTTTCATCAAAGCAG  1537

Query 1430  CAAAACTGGAGAACCAGGAGTCTCGGGTCTCTGAAATCCACAGCCTTGTTCATCGGCTCCCAGAGAAAAATCGG  1503
            ||||.|||||.|||||.|||.||||.||.|||||.||||||||.|||||.|||||||||||.|||||.||||||
Sbjct 1538  CAAAGCTGGAAAACCAAGAGACTCGAGTGTCTGAGATCCACAGTCTTGTCCATCGGCTCCCGGAGAAGAATCGG  1611

Query 1504  CAGATGTTACAGCTGCTCATGAACCACTTGGCAAATGTTGCTAACAACCACAAGCAGAATTTGATGACGGTGGC  1577
            ||||||||.||||||||||||||||||.||||.|||||||||||||||||||||||||||.|||||||.|||||
Sbjct 1612  CAGATGTTGCAGCTGCTCATGAACCACCTGGCCAATGTTGCTAACAACCACAAGCAGAATCTGATGACTGTGGC  1685

Query 1578  AAACCTTGGTGTGGTGTTTGGACCCACTCTGCTGAGGCCTCAGGAAGAAACAGTAGCAGCCATCATGGACATCA  1651
            ||||||.||.|||||||||||||||||..||||..||||||||||||||||.||.||.||||||||||||||||
Sbjct 1686  AAACCTGGGCGTGGTGTTTGGACCCACCTTGCTTCGGCCTCAGGAAGAAACTGTGGCGGCCATCATGGACATCA  1759

Query 1652  AATTTCAGAACATTGTCATTGAGATCCTAATAGAAAACCACGAAAAGATATTTAACACCGTGCCCGATATGCCT  1725
            |.|||||||||||||||||.||||||.||||.||.|||||.||.||||||||.|||||.|||||.|||.||||.
Sbjct 1760  AGTTTCAGAACATTGTCATCGAGATCTTAATCGAGAACCATGAGAAGATATTCAACACGGTGCCTGATGTGCCC  1833

Query 1726  CTCACCAATGCCCAGCTGCACCTGTCTCGGAAGAAGAGCAGTGACTCCAAGCCCCCGTCCTGCAGCGAGAGGCC  1799
            ||||||||.||||||||.||||||||.||||||||.||||||||||||||||||||.|||||||||.|||||||
Sbjct 1834  CTCACCAACGCCCAGCTACACCTGTCCCGGAAGAAAAGCAGTGACTCCAAGCCCCCATCCTGCAGCAAGAGGCC  1907

Query 1800  CCTGACGCTCTTCCACACCGTTCAGTCAACAGAGAAACAGGAACAAAGGAACAGCATCATCAACTCCAGTTTGG  1873
            |||||||||||||||..|.||.|..||.|||||.||||||||.||.||||||||||||||||||||||||||||
Sbjct 1908  CCTGACGCTCTTCCATGCTGTGCCATCCACAGAAAAACAGGAGCAGAGGAACAGCATCATCAACTCCAGTTTGG  1981

Query 1874  AATCTGTCTCATCAAATCCAAACAGCATCCTTAATTCCAGCAGCAGCTTACAGCCCAACATGAACTCCAGTGAC  1947
            ||||.|||||.||.|.|.||||||||||||||||.||.|||||||||.|.||||||||..||||.|||||.|||
Sbjct 1982  AATCGGTCTCCTCGAGTGCAAACAGCATCCTTAACTCTAGCAGCAGCCTGCAGCCCAATCTGAATTCCAGCGAC  2055

Query 1948  CCAGACCTGGCTGTGGTCAAACCCACCCGGCCCAACTCACTCCCCCCGAATCCAAGCCCAA--------CTT--  2011
            .||.||||||.||||||||||||.|..|||||||..||||||..|    |||  |||.|||        |||  
Sbjct 2056  TCAAACCTGGATGTGGTCAAACCTAGTCGGCCCAGTTCACTCATC----ATC--AGCACAAAGGAGCGTCTTAA  2123

Query 2012  CACCCCTCTCGCCATCTTGGCCCATGTTCTCGGCGCCATCCAGCCCTATGCCCACCTCATCCACGTCCAGCGAC  2085
            ||..||.||     ||||.| ||.||.|||.                                           
Sbjct 2124  CATACCGCT-----TCTTAG-CCTTGATCTG-------------------------------------------  2148

Query 2086  TCATCCCCCGTCAGCACACCGTTCCGGAAGGCAAAAGCCTTGTATGCCTGCAAAGCTGAACATGACTCAGAACT  2159
                                                                                      
Sbjct 2149  --------------------------------------------------------------------------  2148

Query 2160  TTCGTTCACAGCAGGCACGGTCTTCGATAATGTTCACCCATCTCAGGAGCCTGGCTGGTTGGAGGGGACTCTGA  2233
                                                                                      
Sbjct 2149  --------------------------------------------------------------------------  2148

Query 2234  ACGGAAAGACTGGCCTCATCCCTGAGAATTACGTGGAGTTCCTC  2277
                                                        
Sbjct 2149  --------------------------------------------  2148

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