Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07836
- Subject:
- XM_017317991.1
- Aligned Length:
- 2407
- Identities:
- 1095
- Gaps:
- 1172
Alignment
Query 1 ATG-------GGGCTCCCAG-CGCT--------CGAGTTCAGCGACTGCTGC-----------CTCGATAG--- 44
||| ||.||.|||| .||| |.||...|||.|||||.|| |..|||||
Sbjct 1 ATGTCTCACAGGTCTTCCAGAGGCTTCCAGAGGCCAGAGAAGCCACTGCAGCATGAGTTACTTCAAGATAGCTG 74
Query 45 ------TCC-------GCACTTC-CGAGAGAC----------GCTCAAGTCG----------CACGAAG----- 79
||| ||.|||| |..||||| ||| ||| || ||| ||
Sbjct 75 GGAGCCTCCACTGGCTGCTCTTCTCTTGAGACCACAGGAAATGCT-AAG-CGGGATGCTTGACAC--AGTTGGT 144
Query 80 ------CAGAGCTGGACAAGACC--------------------AACAAATTCAT---CAAGGA------GCTCA 118
||| |||..|.|||.|| ||.|||||..| ||||.| .||||
Sbjct 145 CACTCCCAG-GCTCCAAAAGTCCTGACTTCCCATCTCACACAGAAGAAATTGGTTTACAAGAACATTACTCTCA 217
Query 119 ------TCAAGGACGGGAAGTCACTCATAAGCG---------CGCT------CAAGAATTTGTCTTCAGCGAAG 171
||| |.|||| .||||| .||| ||.|.||||||||||.||.|||
Sbjct 218 CCTACTTCA-----GAGAAG-------AAAGCGGGTATTTTTGGCTAAGGTACATGGATTTGTCTTCGGCAAAG 279
Query 172 CGGAAGTTTGCAGATTCCTTAAATGAATTTAAATTTCAGTGCATAGGAGATGCAGAAACAGATGATGAGATGTG 245
|||||||||||||||||||||||||||||||||||||||||.|||||||||||.||||||||||||||||||||
Sbjct 280 CGGAAGTTTGCAGATTCCTTAAATGAATTTAAATTTCAGTGTATAGGAGATGCCGAAACAGATGATGAGATGTG 353
Query 246 TATAGCAAGGTCTTTGCAGGAGTTTGCCACTGTCCTCAGGAATCTTGAAGATGAACGGATACGGATGATTGAGA 319
||||||.||.||||||||.||.|||||..||||.|||||||||||||||||.||.||||..||.|||||.||||
Sbjct 354 TATAGCGAGATCTTTGCAAGAATTTGCTGCTGTTCTCAGGAATCTTGAAGACGAGCGGAGTCGAATGATCGAGA 427
Query 320 ATGCCAGCGAGGTGCTCATCACTCCCTTGGAGAAGTTTCGAAAGGAACAGATCGGGGCTGCCAAGGAAGCCAAA 393
||||||||||||||||||||||.|||||||||||||||||||||||.|||||.|||||.||||.||||||||||
Sbjct 428 ATGCCAGCGAGGTGCTCATCACACCCTTGGAGAAGTTTCGAAAGGAGCAGATTGGGGCCGCCAGGGAAGCCAAA 501
Query 394 AAGAAGTATGACAAAGAGACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTTGTCTTCCAAAAAGAA 467
||||||||||||||||||||.||.|||||.||.||||.||||||||||||.|||||||||||||||||||||||
Sbjct 502 AAGAAGTATGACAAAGAGACCGAGAAGTACTGCGGCACCTTAGAAAAACATTTGAATTTGTCTTCCAAAAAGAA 575
Query 468 AGAATCTCAGCTTCAGGAGGCAGACAGCCAAGTGGACCTGGTCCGGCAGCATTTCTATGAAGTATCCCTGGAAT 541
.|||||.|||||.|||||||||||||||||||||||||||||.|||||.||||||||.||||||||||||||.|
Sbjct 576 GGAATCCCAGCTACAGGAGGCAGACAGCCAAGTGGACCTGGTTCGGCAACATTTCTACGAAGTATCCCTGGAGT 649
Query 542 ATGTCTTCAAGGTGCAGGAAGTCCAAGAGAGAAAGATGTTTGAGTTTGTGGAGCCTCTGCTGGCCTTCCTGCAA 615
|||||||.||||||||||||||.||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 650 ATGTCTTTAAGGTGCAGGAAGTGCAAGAGAGAAAGATGTTTGAGTTTGTAGAGCCTCTGCTGGCCTTCCTGCAA 723
Query 616 GGACTCTTCACTTTCTATCACCATGGTTACGAACTGGCCAAGGATTTCGGGGACTTCAAGACACAGTTAACCAT 689
|||||||||||||||||||||||||||||.||.||||||||||||||.||.|||||.|||||||||||.|||||
Sbjct 724 GGACTCTTCACTTTCTATCACCATGGTTATGAGCTGGCCAAGGATTTTGGTGACTTTAAGACACAGTTGACCAT 797
Query 690 TAGCATACAGAACACAAGAAATCGCTTTGAAGGCACTAGATCAGAAGTGGAATCACTGATGAAAAAGATGAAGG 763
.||||||||.||.||||||||.|||||||||||.||.||.||.||.||||||||.||||||||.||||||||||
Sbjct 798 CAGCATACAAAATACAAGAAACCGCTTTGAAGGAACCAGGTCTGAGGTGGAATCGCTGATGAAGAAGATGAAGG 871
Query 764 AGAATCCCCTTGAGCACAAGACCATCAGTCCCTACACCATGGAGGGATACCTCTACGTGCAGGAGAAACGTCAC 837
|.||.|||||.|||||||||||||||||.||.|||||||||||.||.|||||.||||||||||||||.||||||
Sbjct 872 AAAACCCCCTGGAGCACAAGACCATCAGCCCGTACACCATGGAAGGGTACCTGTACGTGCAGGAGAAGCGTCAC 945
Query 838 TTTGGAACTTCTTGGGTGAAGCACTACTGTACATATCAACGGGATTCCAAACAAATCACCATGGTACCATTTGA 911
|||||||||||.||||||||||||||||||||.||.|||||||||||||||||||||||||||||.|||||.||
Sbjct 946 TTTGGAACTTCCTGGGTGAAGCACTACTGTACCTACCAACGGGATTCCAAACAAATCACCATGGTTCCATTCGA 1019
Query 912 CCAAAAGTCAGGAGGAAAAGGGGGAGAAGATGAATCAGTTATCCTCAAATCCTGCACACGGCGGAAAACAGACT 985
||||||||||||||||||.|||||||||||.||.||.||||.|||||||||||||||||||||.||.|||||||
Sbjct 1020 CCAAAAGTCAGGAGGAAAGGGGGGAGAAGACGAGTCCGTTACCCTCAAATCCTGCACACGGCGAAAGACAGACT 1093
Query 986 CCATTGAGAAGAGGTTTTGCTTTGATGTGGAAGCAGTAGACAGGCCAGGGGTTATCACCATGCAAGCTTTGTCG 1059
||||.||||||.|.||.||||||||.||||||||||||||||||||||||||||||||||||||.||.||||||
Sbjct 1094 CCATCGAGAAGCGATTCTGCTTTGACGTGGAAGCAGTAGACAGGCCAGGGGTTATCACCATGCAGGCGTTGTCG 1167
Query 1060 GAAGAGGACCGGAGGCTCTGGATGGAAGCCATGGATGGCCGGGAACCTGTCTACAACTCGAACAAAGACAGCCA 1133
|||||||||||.||||||||||||||||||||||||||||||||||||||.||||||||.||||.|||||||||
Sbjct 1168 GAAGAGGACCGTAGGCTCTGGATGGAAGCCATGGATGGCCGGGAACCTGTGTACAACTCCAACAGAGACAGCCA 1241
Query 1134 GAGTGAAGGGACTGCGCAGTTGGACAGCATTGGCTTCAGCATAATCAGGAAATGCATCCATGCTGTGGAAACCA 1207
|||.||||||||.|..|||||...| ||||||||| ||.||
Sbjct 1242 GAGCGAAGGGACAGGCCAGTTCCCC-------GCTTCAGCA----------------CCCTG------------ 1280
Query 1208 GAGGGATCAACGAGCAAGGGCTGTATCGAATTGTGGGGGTCAACTCCAGAGTGCAGAAGTTGCTGAG----TGT 1277
||||| ||.| |||| |||.||.|| |||.||||....||| ||
Sbjct 1281 GAGGG--CACC--------------------TGTG-------ACTGCAAAG-GCAAAAGTATTAGAGGAGATG- 1323
Query 1278 CCTGATGGACCCCAAGACTGCTTCTGAGACAG-AAACAGATATCTGTGCTGAATGGGAGATAAAGACCATCACT 1350
||||.||| .||||.| ||| ||.|.||| |.|.|.|| ||| .|||
Sbjct 1324 CCTGCTGG---GCAAGCC-----------CAGCAACCTGAT-TATTTCCT---TGG------------TTCA-- 1365
Query 1351 AGTGCTCTGAAGACCTACCTAAGAATGCTTCCAGGACCACTCATGATGTACCAGTTTCAAAGAAGTTTCATCAA 1424
Sbjct 1366 -------------------------------------------------------------------------- 1365
Query 1425 AGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTCTCTGAAATCCACAGCCTTGTTCATCGGCTCCCAGAGAAAA 1498
Sbjct 1366 -------------------------------------------------------------------------- 1365
Query 1499 ATCGGCAGATGTTACAGCTGCTCATGAACCACTTGGCAAATGTTGCTAACAACCACAAGCAGAATTTGATGACG 1572
Sbjct 1366 -------------------------------------------------------------------------- 1365
Query 1573 GTGGCAAACCTTGGTGTGGTGTTTGGACCCACTCTGCTGAGGCCTCAGGAAGAAACAGTAGCAGCCATCATGGA 1646
Sbjct 1366 -------------------------------------------------------------------------- 1365
Query 1647 CATCAAATTTCAGAACATTGTCATTGAGATCCTAATAGAAAACCACGAAAAGATATTTAACACCGTGCCCGATA 1720
Sbjct 1366 -------------------------------------------------------------------------- 1365
Query 1721 TGCCTCTCACCAATGCCCAGCTGCACCTGTCTCGGAAGAAGAGCAGTGACTCCAAGCCCCCGTCCTGCAGCGAG 1794
Sbjct 1366 -------------------------------------------------------------------------- 1365
Query 1795 AGGCCCCTGACGCTCTTCCACACCGTTCAGTCAACAGAGAAACAGGAACAAAGGAACAGCATCATCAACTCCAG 1868
Sbjct 1366 -------------------------------------------------------------------------- 1365
Query 1869 TTTGGAATCTGTCTCATCAAATCCAAACAGCATCCTTAATTCCAGCAGCAGCTTACAGCCCAACATGAACTCCA 1942
Sbjct 1366 -------------------------------------------------------------------------- 1365
Query 1943 GTGACCCAGACCTGGCTGTGGTCAAACCCACCCGGCCCAACTCACTCCCCCCGAATCCAAGCCCAACTTCACCC 2016
Sbjct 1366 -------------------------------------------------------------------------- 1365
Query 2017 CTCTCGCCATCTTGGCCCATGTTCTCGGCGCCATCCAGCCCTATGCCCACCTCATCCACGTCCAGCGACTCATC 2090
Sbjct 1366 -------------------------------------------------------------------------- 1365
Query 2091 CCCCGTCAGCACACCGTTCCGGAAGGCAAAAGCCTTGTATGCCTGCAAAGCTGAACATGACTCAGAACTTTCGT 2164
Sbjct 1366 -------------------------------------------------------------------------- 1365
Query 2165 TCACAGCAGGCACGGTCTTCGATAATGTTCACCCATCTCAGGAGCCTGGCTGGTTGGAGGGGACTCTGAACGGA 2238
Sbjct 1366 -------------------------------------------------------------------------- 1365
Query 2239 AAGACTGGCCTCATCCCTGAGAATTACGTGGAGTTCCTC 2277
Sbjct 1366 --------------------------------------- 1365
