Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_07836
Subject:
XR_002956155.1
Aligned Length:
3174
Identities:
1138
Gaps:
2017

Alignment

Query    1  ATGGGGCTCCCAGCGCTCGAGTTCAGCGACTGCTGCCTCGATAGTCCGCACTTCCGAGAGACGCTCAAGTCGCA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CGAAGCAGAGCTGGACAAGACCAACAAATTCATCAAGGAGCTCATCAAGGACGGGAAGTCACTCATAAGCGCGC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TCAAGAATTTGTCTTCAGCGAAGCGGAAGTTTGCAGATTCCTTAAATGAATTTAAATTTCAGTGCATAGGAGAT  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  GCAGAAACAGATGATGAGATGTGTATAGCAAGGTCTTTGCAGGAGTTTGCCACTGTCCTCAGGAATCTTGAAGA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  TGAACGGATACGGATGATTGAGAATGCCAGCGAGGTGCTCATCACTCCCTTGGAGAAGTTTCGAAAGGAACAGA  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  TCGGGGCTGCCAAGGAAGCCAAAAAGAAGTATGACAAAGAGACAGAAAAGTATTGTGGCATCTTAGAAAAACAC  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  TTGAATTTGTCTTCCAAAAAGAAAGAATCTCAGCTTCAGGAGGCAGACAGCCAAGTGGACCTGGTCCGGCAGCA  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  TTTCTATGAAGTATCCCTGGAATATGTCTTCAAGGTGCAGGAAGTCCAAGAGAGAAAGATGTTTGAGTTTGTGG  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  AGCCTCTGCTGGCCTTCCTGCAAGGACTCTTCACTTTCTATCACCATGGTTACGAACTGGCCAAGGATTTCGGG  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  GACTTCAAGACACAGTTAACCATTAGCATACAGAACACAAGAAATCGCTTTGAAGGCACTAGATCAGAAGTGGA  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  ATCACTGATGAAAAAGATGAAGGAGAATCCCCTTGAGCACAAGACCATCAGTCCCTACACCATGGAGGGATACC  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  TCTACGTGCAGGAGAAACGTCACTTTGGAACTTCTTGGGTGAAGCACTACTGTACATATCAACGGGATTCCAAA  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  CAAATCACCATGGTACCATTTGACCAAAAGTCAGGAGGAAAAGGGGGAGAAGATGAATCAGTTATCCTCAAATC  962
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  963  CTGCACACGGCGGAAAACAGACTCCATTGAGAAGAGGTTTTGCTTTGATGTGGAAGCAGTAGACAGGCCAGGGG  1036
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1037  TTATCACCATGCAAGCTTTGTCGGAAGAGGACCGGAGGCTCTGGATGGAAGCCATGGATGGCCGGGAACCTGTC  1110
                                                                                ||||.|
Sbjct    1  --------------------------------------------------------------------CCTGCC  6

Query 1111  TACAACTCGAACAAAGACAGCCAGAGTGAAGGGA------CTGCGCAGTTGGACAGCATTGGCTTCAGCATAAT  1178
            |....|||            |||.||||..||||      ||||||||||||||||||||||||||||||||||
Sbjct    7  TCGGCCTC------------CCAAAGTGCTGGGATTCTGGCTGCGCAGTTGGACAGCATTGGCTTCAGCATAAT  68

Query 1179  CAGGAAATGCATCCATGCTGTGGAAACCAGAGGGATCAACGAGCAAGGGCTGTATCGAATTGTGGGGGTCAACT  1252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct   69  CAGGAAATGCATCCATGCTGTGGAAACCAGAGGGATCAACGAGCAAGGGCTGTATCGAATTGTGGGTGTCAACT  142

Query 1253  CCAGAGTGCAGAAGTTGCTGAGTGTCCTGATGGACCCCAAGACTGCTTCTGAGACAGAAACAGATATCTGTGCT  1326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  143  CCAGAGTGCAGAAGTTGCTGAGTGTCCTGATGGACCCCAAGACTGCTTCTGAGACAGAAACAGATATCTGTGCT  216

Query 1327  GAATGGGAGATAAAGACCATCACTAGTGCTCTGAAGACCTACCTAAGAATGCTTCCAGGACCACTCATGATGTA  1400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  217  GAATGGGAGATAAAGACCATCACTAGTGCTCTGAAGACCTACCTAAGAATGCTTCCAGGACCACTCATGATGTA  290

Query 1401  CCAGTTTCAAAGAAGTTTCATCAAAGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTCTCTGAAATCCACAGCC  1474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  291  CCAGTTTCAAAGAAGTTTCATCAAAGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTCTCTGAAATCCACAGCC  364

Query 1475  TTGTTCATCGGCTCCCAGAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTTGGCAAATGTTGCTAAC  1548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  365  TTGTTCATCGGCTCCCAGAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTTGGCAAATGTTGCTAAC  438

Query 1549  AACCACAAGCAGAATTTGATGACGGTGGCAAACCTTGGTGTGGTGTTTGGACCCACTCTGCTGAGGCCTCAGGA  1622
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  439  AACCACAAGCAGAATTTGATGACGGTGGCAAACCTTGGTGTGGTGTTTGGACCCACTCTGCTGAGGCCTCAGGA  512

Query 1623  AGAAACAGTAGCAGCCATCATGGACATCAAATTTCAGAACATTGTCATTGAGATCCTAATAGAAAACCACGAAA  1696
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  513  AGAAACAGTAGCAGCCATCATGGACATCAAATTTCAGAACATTGTCATTGAGATCCTAATAGAAAACCACGAAA  586

Query 1697  AGATATTTAACACCGTGCCCGATATGCCTCTCACCAATGCCCAGCTGCACCTGTCTCGGAAGAAGAGCAGTGAC  1770
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  587  AGATATTTAACACCGTGCCCGATATGCCTCTCACCAATGCCCAGCTGCACCTGTCTCGGAAGAAGAGCAGTGAC  660

Query 1771  TCCAAGCCCCCGTCCTGCAGCGAGAGGCCCCTGACGCTCTTCCACACCGTTCAGTCAACAGAGAAACAGGAACA  1844
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  661  TCCAAGCCCCCGTCCTGCAGCGAGAGGCCCCTGACGCTCTTCCACACCGTTCAGTCAACAGAGAAACAGGAACA  734

Query 1845  AAGGAACAGCATCATCAACTCCAGTTTGGAATCTGTCTCATCAAATCCAAACAGCATCCTTAATTCCAGCAGCA  1918
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  735  AAGGAACAGCATCATCAACTCCAGTTTGGAATCTGTCTCATCAAATCCAAACAGCATCCTTAATTCCAGCAGCA  808

Query 1919  GCTTACAGCCCAACATGAACTCCAGTGACCCAGACCTGGCTGTGGTCAAACCCACCCGGCCCAACTCAC-----  1987
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct  809  GCTTACAGCCCAACATGAACTCCAGTGACCCAGACCTGGCTGTGGTCAAACCCACCCGGCCCAACTCACTGGTT  882

Query 1988  ---------------------------------------------------------------------TCCCC  1992
                                                                                 |||||
Sbjct  883  CATGCGAGTTCAGCAAGCAGTTACCATGTCTACGGCATGCCAGGATACTGTTGGGAAGGTAGTATTCCGTCCCC  956

Query 1993  CCGAATCCAAGCCCAACTTCACCCCTCTCGCCATCTTGGCCCATGTTCTCGGCGCCATCCAGCCCTATGCCCAC  2066
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  957  CCGAATCCAAGCCCAACTTCACCCCTCTCGCCATCTTGGCCCATGTTCTCGGCGCCATCCAGCCCTATGCCCAC  1030

Query 2067  CTCATCCACGTCCAGCGACTCATCCCCCGT--------------------------------------------  2096
            ||||||||||||||||||||||||||||||                                            
Sbjct 1031  CTCATCCACGTCCAGCGACTCATCCCCCGTCAGGTCTGTTGCAGGGTTTGTTTGGTTTTCTGTTGCTGCCGTTG  1104

Query 2097  --------------------------------------------------------------------------  2096
                                                                                      
Sbjct 1105  TTCTCTCATTGGCTCGGTCCTCTCTTCATGCAGTGTTCAGCCTCCTCGTCAACTTTGTTCCCTGCCATCCAAAC  1178

Query 2097  -----------------------------------------------CAGCACACCGTTCCGGAAGGCAAAAGC  2123
                                                           |||||||||||||||||||||||||||
Sbjct 1179  CTGCACTTGCTTTTTGACAGGCCAGAAGAAGCGGTACATGAAGACTCCAGCACACCGTTCCGGAAGGCAAAAGC  1252

Query 2124  CTTGTATGCCTGCAAAGCTGAACATGACTCAGAACTTTCGTTCACAGCAGGCACGGTCTTCGATA---------  2188
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct 1253  CTTGTATGCCTGCAAAGCTGAACATGACTCAGAACTTTCGTTCACAGCAGGCACGGTCTTCGATAACGCAGAGT  1326

Query 2189  --------------------ATGTTCAC--CCA-------------------------TCTCAGGAGCCTGG--  2213
                                ||.|||||  |||                         |||||    |||||  
Sbjct 1327  GTCCTTCAGCTTCCACAGCCATCTTCACTGCCACACCGAAGCTCCGGGCACCTCCACCTCTCA----CCTGGGC  1396

Query 2214  -------CTGG-----------------------------TTG-------------------------------  2220
                   ||||                             |||                               
Sbjct 1397  ACTTCCACTGGCCGCCTGACACATCTTCTCACATCTGCTCTTGCTGCCATAACCCCCTCTTTACAGAGCAGCGA  1470

Query 2221  GAGGGGACTCTG---AACGGAAA----------------GACTGGCCT--CAT--CCCTGAGAATTACGT----  2267
            |||.|..||.||   ||||||||                .|.||||||  |||  |.|||||||||||.|    
Sbjct 1471  GAGTGATCTTTGAAAAACGGAAATGGCATTAAAGCCCTTCAGTGGCCTCCCATTGCTCTGAGAATTACTTACAA  1544

Query 2268  GG-------------AGTTCCTC---------------------------------------------------  2277
            ||             |||||||.                                                   
Sbjct 1545  GGCCCTCCAGGGCCCAGTTCCTGCCCCTCTGACCTCACGCCCTCACTTGACATACTACAGCCTCATGCCTTCTT  1618

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 1619  CATGTTCTCAAGCAAGGTCGGCAAACTATGACCTGCCCGTCAAATCCAACCTGCCACCTGTCACCTAACAATTC  1692

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 1693  TGTAACTGCTCCCACATACAACATGGTCGTCATCATAAATCCTATAGGTATTGTTGAGAGCAGGAGGAAAGTTT  1766

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 1767  GGTTGAGTGAGTGAGAGACCTTACCCAAGCCTTCCTGTGGTCTCTAGGAGTCATGGCAGAGTTCGCTGACACTG  1840

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 1841  GTCTGCTTTTAACCAGCCTTGCCAGTGACCTTTCAAATTCCCTGAGGAGCAAAAGGCCAAATTGAACCTGAAAG  1914

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 1915  AAAACACCTCTCAGTGTTGACTGAGTTGCAGTAGAAAATGGACCTGACAAAACTTCACCCATCTCAGGAGCCTG  1988

Query 2278  ------------------------------------------------------------------  2277
                                                                              
Sbjct 1989  GCTGGTTGGAGGGGACTCTGAACGGAAAGACTGGCCTCATCCCTGAGAATTACGTGGAGTTCCTCT  2054

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