Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07836
- Subject:
- XR_002956155.1
- Aligned Length:
- 3174
- Identities:
- 1138
- Gaps:
- 2017
Alignment
Query 1 ATGGGGCTCCCAGCGCTCGAGTTCAGCGACTGCTGCCTCGATAGTCCGCACTTCCGAGAGACGCTCAAGTCGCA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 CGAAGCAGAGCTGGACAAGACCAACAAATTCATCAAGGAGCTCATCAAGGACGGGAAGTCACTCATAAGCGCGC 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 TCAAGAATTTGTCTTCAGCGAAGCGGAAGTTTGCAGATTCCTTAAATGAATTTAAATTTCAGTGCATAGGAGAT 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 GCAGAAACAGATGATGAGATGTGTATAGCAAGGTCTTTGCAGGAGTTTGCCACTGTCCTCAGGAATCTTGAAGA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 TGAACGGATACGGATGATTGAGAATGCCAGCGAGGTGCTCATCACTCCCTTGGAGAAGTTTCGAAAGGAACAGA 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 TCGGGGCTGCCAAGGAAGCCAAAAAGAAGTATGACAAAGAGACAGAAAAGTATTGTGGCATCTTAGAAAAACAC 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 TTGAATTTGTCTTCCAAAAAGAAAGAATCTCAGCTTCAGGAGGCAGACAGCCAAGTGGACCTGGTCCGGCAGCA 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 TTTCTATGAAGTATCCCTGGAATATGTCTTCAAGGTGCAGGAAGTCCAAGAGAGAAAGATGTTTGAGTTTGTGG 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 AGCCTCTGCTGGCCTTCCTGCAAGGACTCTTCACTTTCTATCACCATGGTTACGAACTGGCCAAGGATTTCGGG 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 GACTTCAAGACACAGTTAACCATTAGCATACAGAACACAAGAAATCGCTTTGAAGGCACTAGATCAGAAGTGGA 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 ATCACTGATGAAAAAGATGAAGGAGAATCCCCTTGAGCACAAGACCATCAGTCCCTACACCATGGAGGGATACC 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 TCTACGTGCAGGAGAAACGTCACTTTGGAACTTCTTGGGTGAAGCACTACTGTACATATCAACGGGATTCCAAA 888
Sbjct 1 -------------------------------------------------------------------------- 0
Query 889 CAAATCACCATGGTACCATTTGACCAAAAGTCAGGAGGAAAAGGGGGAGAAGATGAATCAGTTATCCTCAAATC 962
Sbjct 1 -------------------------------------------------------------------------- 0
Query 963 CTGCACACGGCGGAAAACAGACTCCATTGAGAAGAGGTTTTGCTTTGATGTGGAAGCAGTAGACAGGCCAGGGG 1036
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1037 TTATCACCATGCAAGCTTTGTCGGAAGAGGACCGGAGGCTCTGGATGGAAGCCATGGATGGCCGGGAACCTGTC 1110
||||.|
Sbjct 1 --------------------------------------------------------------------CCTGCC 6
Query 1111 TACAACTCGAACAAAGACAGCCAGAGTGAAGGGA------CTGCGCAGTTGGACAGCATTGGCTTCAGCATAAT 1178
|....||| |||.||||..|||| ||||||||||||||||||||||||||||||||||
Sbjct 7 TCGGCCTC------------CCAAAGTGCTGGGATTCTGGCTGCGCAGTTGGACAGCATTGGCTTCAGCATAAT 68
Query 1179 CAGGAAATGCATCCATGCTGTGGAAACCAGAGGGATCAACGAGCAAGGGCTGTATCGAATTGTGGGGGTCAACT 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 69 CAGGAAATGCATCCATGCTGTGGAAACCAGAGGGATCAACGAGCAAGGGCTGTATCGAATTGTGGGTGTCAACT 142
Query 1253 CCAGAGTGCAGAAGTTGCTGAGTGTCCTGATGGACCCCAAGACTGCTTCTGAGACAGAAACAGATATCTGTGCT 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 CCAGAGTGCAGAAGTTGCTGAGTGTCCTGATGGACCCCAAGACTGCTTCTGAGACAGAAACAGATATCTGTGCT 216
Query 1327 GAATGGGAGATAAAGACCATCACTAGTGCTCTGAAGACCTACCTAAGAATGCTTCCAGGACCACTCATGATGTA 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 GAATGGGAGATAAAGACCATCACTAGTGCTCTGAAGACCTACCTAAGAATGCTTCCAGGACCACTCATGATGTA 290
Query 1401 CCAGTTTCAAAGAAGTTTCATCAAAGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTCTCTGAAATCCACAGCC 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 CCAGTTTCAAAGAAGTTTCATCAAAGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTCTCTGAAATCCACAGCC 364
Query 1475 TTGTTCATCGGCTCCCAGAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTTGGCAAATGTTGCTAAC 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 TTGTTCATCGGCTCCCAGAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTTGGCAAATGTTGCTAAC 438
Query 1549 AACCACAAGCAGAATTTGATGACGGTGGCAAACCTTGGTGTGGTGTTTGGACCCACTCTGCTGAGGCCTCAGGA 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 AACCACAAGCAGAATTTGATGACGGTGGCAAACCTTGGTGTGGTGTTTGGACCCACTCTGCTGAGGCCTCAGGA 512
Query 1623 AGAAACAGTAGCAGCCATCATGGACATCAAATTTCAGAACATTGTCATTGAGATCCTAATAGAAAACCACGAAA 1696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 AGAAACAGTAGCAGCCATCATGGACATCAAATTTCAGAACATTGTCATTGAGATCCTAATAGAAAACCACGAAA 586
Query 1697 AGATATTTAACACCGTGCCCGATATGCCTCTCACCAATGCCCAGCTGCACCTGTCTCGGAAGAAGAGCAGTGAC 1770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 AGATATTTAACACCGTGCCCGATATGCCTCTCACCAATGCCCAGCTGCACCTGTCTCGGAAGAAGAGCAGTGAC 660
Query 1771 TCCAAGCCCCCGTCCTGCAGCGAGAGGCCCCTGACGCTCTTCCACACCGTTCAGTCAACAGAGAAACAGGAACA 1844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCCAAGCCCCCGTCCTGCAGCGAGAGGCCCCTGACGCTCTTCCACACCGTTCAGTCAACAGAGAAACAGGAACA 734
Query 1845 AAGGAACAGCATCATCAACTCCAGTTTGGAATCTGTCTCATCAAATCCAAACAGCATCCTTAATTCCAGCAGCA 1918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 AAGGAACAGCATCATCAACTCCAGTTTGGAATCTGTCTCATCAAATCCAAACAGCATCCTTAATTCCAGCAGCA 808
Query 1919 GCTTACAGCCCAACATGAACTCCAGTGACCCAGACCTGGCTGTGGTCAAACCCACCCGGCCCAACTCAC----- 1987
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 GCTTACAGCCCAACATGAACTCCAGTGACCCAGACCTGGCTGTGGTCAAACCCACCCGGCCCAACTCACTGGTT 882
Query 1988 ---------------------------------------------------------------------TCCCC 1992
|||||
Sbjct 883 CATGCGAGTTCAGCAAGCAGTTACCATGTCTACGGCATGCCAGGATACTGTTGGGAAGGTAGTATTCCGTCCCC 956
Query 1993 CCGAATCCAAGCCCAACTTCACCCCTCTCGCCATCTTGGCCCATGTTCTCGGCGCCATCCAGCCCTATGCCCAC 2066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CCGAATCCAAGCCCAACTTCACCCCTCTCGCCATCTTGGCCCATGTTCTCGGCGCCATCCAGCCCTATGCCCAC 1030
Query 2067 CTCATCCACGTCCAGCGACTCATCCCCCGT-------------------------------------------- 2096
||||||||||||||||||||||||||||||
Sbjct 1031 CTCATCCACGTCCAGCGACTCATCCCCCGTCAGGTCTGTTGCAGGGTTTGTTTGGTTTTCTGTTGCTGCCGTTG 1104
Query 2097 -------------------------------------------------------------------------- 2096
Sbjct 1105 TTCTCTCATTGGCTCGGTCCTCTCTTCATGCAGTGTTCAGCCTCCTCGTCAACTTTGTTCCCTGCCATCCAAAC 1178
Query 2097 -----------------------------------------------CAGCACACCGTTCCGGAAGGCAAAAGC 2123
|||||||||||||||||||||||||||
Sbjct 1179 CTGCACTTGCTTTTTGACAGGCCAGAAGAAGCGGTACATGAAGACTCCAGCACACCGTTCCGGAAGGCAAAAGC 1252
Query 2124 CTTGTATGCCTGCAAAGCTGAACATGACTCAGAACTTTCGTTCACAGCAGGCACGGTCTTCGATA--------- 2188
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 CTTGTATGCCTGCAAAGCTGAACATGACTCAGAACTTTCGTTCACAGCAGGCACGGTCTTCGATAACGCAGAGT 1326
Query 2189 --------------------ATGTTCAC--CCA-------------------------TCTCAGGAGCCTGG-- 2213
||.||||| ||| ||||| |||||
Sbjct 1327 GTCCTTCAGCTTCCACAGCCATCTTCACTGCCACACCGAAGCTCCGGGCACCTCCACCTCTCA----CCTGGGC 1396
Query 2214 -------CTGG-----------------------------TTG------------------------------- 2220
|||| |||
Sbjct 1397 ACTTCCACTGGCCGCCTGACACATCTTCTCACATCTGCTCTTGCTGCCATAACCCCCTCTTTACAGAGCAGCGA 1470
Query 2221 GAGGGGACTCTG---AACGGAAA----------------GACTGGCCT--CAT--CCCTGAGAATTACGT---- 2267
|||.|..||.|| |||||||| .|.|||||| ||| |.|||||||||||.|
Sbjct 1471 GAGTGATCTTTGAAAAACGGAAATGGCATTAAAGCCCTTCAGTGGCCTCCCATTGCTCTGAGAATTACTTACAA 1544
Query 2268 GG-------------AGTTCCTC--------------------------------------------------- 2277
|| |||||||.
Sbjct 1545 GGCCCTCCAGGGCCCAGTTCCTGCCCCTCTGACCTCACGCCCTCACTTGACATACTACAGCCTCATGCCTTCTT 1618
Query 2278 -------------------------------------------------------------------------- 2277
Sbjct 1619 CATGTTCTCAAGCAAGGTCGGCAAACTATGACCTGCCCGTCAAATCCAACCTGCCACCTGTCACCTAACAATTC 1692
Query 2278 -------------------------------------------------------------------------- 2277
Sbjct 1693 TGTAACTGCTCCCACATACAACATGGTCGTCATCATAAATCCTATAGGTATTGTTGAGAGCAGGAGGAAAGTTT 1766
Query 2278 -------------------------------------------------------------------------- 2277
Sbjct 1767 GGTTGAGTGAGTGAGAGACCTTACCCAAGCCTTCCTGTGGTCTCTAGGAGTCATGGCAGAGTTCGCTGACACTG 1840
Query 2278 -------------------------------------------------------------------------- 2277
Sbjct 1841 GTCTGCTTTTAACCAGCCTTGCCAGTGACCTTTCAAATTCCCTGAGGAGCAAAAGGCCAAATTGAACCTGAAAG 1914
Query 2278 -------------------------------------------------------------------------- 2277
Sbjct 1915 AAAACACCTCTCAGTGTTGACTGAGTTGCAGTAGAAAATGGACCTGACAAAACTTCACCCATCTCAGGAGCCTG 1988
Query 2278 ------------------------------------------------------------------ 2277
Sbjct 1989 GCTGGTTGGAGGGGACTCTGAACGGAAAGACTGGCCTCATCCCTGAGAATTACGTGGAGTTCCTCT 2054
