Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07836
- Subject:
- XR_944323.1
- Aligned Length:
- 3187
- Identities:
- 1241
- Gaps:
- 1920
Alignment
Query 1 ATGGGGCTCCCAGCGCTCGAGTTCAGCGACTGCTGCCTCGATAGTCCGCACTTCCGAGAGACGCTCAAGTCGCA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 CGAAGCAGAGCTGGACAAGACCAACAAATTCATCAAGGAGCTCATCAAGGACGGGAAGTCACTCATAAGCGCGC 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 TCAAGAATTTGTCTTCAGCGAAGCGGAAGTTTGCAGATTCCTTAAATGAATTTAAATTTCAGTGCATAGGAGAT 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 GCAGAAACAGATGATGAGATGTGTATAGCAAGGTCTTTGCAGGAGTTTGCCACTGTCCTCAGGAATCTTGAAGA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 TGAACGGATACGGATGATTGAGAATGCCAGCGAGGTGCTCATCACTCCCTTGGAGAAGTTTCGAAAGGAACAGA 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 TCGGGGCTGCCAAGGAAGCCAAAAAGAAGTATGACAAAGAGACAGAAAAGTATTGTGGCATCTTAGAAAAACAC 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 TTGAATTTGTCTTCCAAAAAGAAAGAATCTCAGCTTCAGGAGGCAGACAGCCAAGTGGACCTGGTCCGGCAGCA 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 TTTCTATGAAGTATCCCTGGAATATGTCTTCAAGGTGCAGGAAGTCCAAGAGAGAAAGATGTTTGAGTTTGTGG 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 AGCCTCTGCTGGCCTTCCTGCAAGGACTCTTCACTTTCTATCACCATGGTTACGAACTGGCCAAGGATTTCGGG 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 GACTTCAAGACACAGTTAACCATTAGCATACAGAACACAAGAAATCGCTTTGAAGGCACTAGATCAGAAGTGGA 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 ATCACTGATGAAAAAGATGAAGGAGAATCCCCTTGAGCACAAGACCATCAGTCCCTACACCATGGAGGGATACC 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 TCTACGTGCAGGAGAAACGTCACTTTGGAACTTCTT-GGGTGAAGCA-CTAC-TGTACATATCAACGGGATTC- 884
||| |.|||| |||| |..|| ||.||||||| .||| ||.|.||| |||.|
Sbjct 1 TCT--------GTGAAA---------GGAA-TAATTAGGCTGAAGCATATACTTGAAAATA-------GATACT 49
Query 885 ------CA---------AACAAATCACCATGGTACCATTTGACCAAAAGTCAGGAGGAAAAGGGGGAGAAGATG 943
|| ||||||||..||| .||| ||.|.||| ||||.
Sbjct 50 TGTTGGCACGGATCTTTAACAAATCTTCAT-ATAC----------AATGACAG----------------AGATT 96
Query 944 AATCAGTTATCCTCAAATCCTGCACACGGCGGAAAACAGACTCCATTGAGAAGAGGTTTTGCTTTGATGTGGAA 1017
|| ||| |||| |.||| ||||| |
Sbjct 97 AA-CAG------------CCTG----------------GCCTC--------AGAGG-----------------A 116
Query 1018 GCAGTAGACAGGCCAGGGGTTATCACCATGCAAGCTTTGTCGGAAGAGGACCGGAGGCTCTGGATGGAAGCCAT 1091
||||
Sbjct 117 GCAG---------------------------------------------------------------------- 120
Query 1092 GGATGGCCGGGAACCTGTCTACAACTCGAACAAAGACAGCCAGAGTGAAGGGACTGCGCAGTTGGACAGCATTG 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ----------------GTCTACAACTCGAACAAAGACAGCCAGAGTGAAGGGACTGCGCAGTTGGACAGCATTG 178
Query 1166 GCTTCAGCATAATCAGGAAATGCATCCATGCTGTGGAAACCAGAGGGATCAACGAGCAAGGGCTGTATCGAATT 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GCTTCAGCATAATCAGGAAATGCATCCATGCTGTGGAAACCAGAGGGATCAACGAGCAAGGGCTGTATCGAATT 252
Query 1240 GTGGGGGTCAACTCCAGAGTGCAGAAGTTGCTGAGTGTCCTGATGGACCCCAAGACTGCTTCTGAGACAGAAAC 1313
|||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 GTGGGTGTCAACTCCAGAGTGCAGAAGTTGCTGAGTGTCCTGATGGACCCCAAGACTGCTTCTGAGACAGAAAC 326
Query 1314 AGATATCTGTGCTGAATGGGAGATAAAGACCATCACTAGTGCTCTGAAGACCTACCTAAGAATGCTTCCAGGAC 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 AGATATCTGTGCTGAATGGGAGATAAAGACCATCACTAGTGCTCTGAAGACCTACCTAAGAATGCTTCCAGGAC 400
Query 1388 CACTCATGATGTACCAGTTTCAAAGAAGTTTCATCAAAGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTCTCT 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 CACTCATGATGTACCAGTTTCAAAGAAGTTTCATCAAAGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTCTCT 474
Query 1462 GAAATCCACAGCCTTGTTCATCGGCTCCCAGAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTTGGC 1535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GAAATCCACAGCCTTGTTCATCGGCTCCCAGAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTTGGC 548
Query 1536 AAATGTTGCTAACAACCACAAGCAGAATTTGATGACGGTGGCAAACCTTGGTGTGGTGTTTGGACCCACTCTGC 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 AAATGTTGCTAACAACCACAAGCAGAATTTGATGACGGTGGCAAACCTTGGTGTGGTGTTTGGACCCACTCTGC 622
Query 1610 TGAGGCCTCAGGAAGAAACAGTAGCAGCCATCATGGACATCAAATTTCAGAACATTGTCATTGAGATCCTAATA 1683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 TGAGGCCTCAGGAAGAAACAGTAGCAGCCATCATGGACATCAAATTTCAGAACATTGTCATTGAGATCCTAATA 696
Query 1684 GAAAACCACGAAAAGATATTTAACACCGTGCCCGATATGCCTCTCACCAATGCCCAGCTGCACCTGTCTCGGAA 1757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 GAAAACCACGAAAAGATATTTAACACCGTGCCCGATATGCCTCTCACCAATGCCCAGCTGCACCTGTCTCGGAA 770
Query 1758 GAAGAGCAGTGACTCCAAGCCCCCGTCCTGCAGCGAGAGGCCCCTGACGCTCTTCCACACCGTTCAGTCAACAG 1831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GAAGAGCAGTGACTCCAAGCCCCCGTCCTGCAGCGAGAGGCCCCTGACGCTCTTCCACACCGTTCAGTCAACAG 844
Query 1832 AGAAACAGGAACAAAGGAACAGCATCATCAACTCCAGTTTGGAATCTGTCTCATCAAATCCAAACAGCATCCTT 1905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 AGAAACAGGAACAAAGGAACAGCATCATCAACTCCAGTTTGGAATCTGTCTCATCAAATCCAAACAGCATCCTT 918
Query 1906 AATTCCAGCAGCAGCTTACAGCCCAACATGAACTCCAGTGACCCAGACCTGGCTGTGGTCAAACCCACCCGGCC 1979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 AATTCCAGCAGCAGCTTACAGCCCAACATGAACTCCAGTGACCCAGACCTGGCTGTGGTCAAACCCACCCGGCC 992
Query 1980 CAACTCAC------------------------------------------------------------------ 1987
||||||||
Sbjct 993 CAACTCACTGGTTCATGCGAGTTCAGCAAGCAGTTACCATGTCTACGGCATGCCAGGATACTGTTGGGAAGGTA 1066
Query 1988 --------TCCCCCCGAATCCAAGCCCAACTTCACCCCTCTCGCCATCTTGGCCCATGTTCTCGGCGCCATCCA 2053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 GTATTCCGTCCCCCCGAATCCAAGCCCAACTTCACCCCTCTCGCCATCTTGGCCCATGTTCTCGGCGCCATCCA 1140
Query 2054 GCCCTATGCCCACCTCATCCACGTCCAGCGACTCATCCCCCGT------------------------------- 2096
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GCCCTATGCCCACCTCATCCACGTCCAGCGACTCATCCCCCGTCAGGTCTGTTGCAGGGTTTGTTTGGTTTTCT 1214
Query 2097 -------------------------------------------------------------------------- 2096
Sbjct 1215 GTTGCTGCCGTTGTTCTCTCATTGGCTCGGTCCTCTCTTCATGCAGTGTTCAGCCTCCTCGTCAACTTTGTTCC 1288
Query 2097 ------------------------------------------------------------CAGCACACCGTTCC 2110
||||||||||||||
Sbjct 1289 CTGCCATCCAAACCTGCACTTGCTTTTTGACAGGCCAGAAGAAGCGGTACATGAAGACTCCAGCACACCGTTCC 1362
Query 2111 GGAAGGCAAAAGCCTTGTATGCCTGCAAAGCTGAACATGACTCAGAACTTTCGTTCACAGCAGGCACGGTCTTC 2184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 GGAAGGCAAAAGCCTTGTATGCCTGCAAAGCTGAACATGACTCAGAACTTTCGTTCACAGCAGGCACGGTCTTC 1436
Query 2185 GATA-----------------------------ATGTTCAC--CCA-------------------------TCT 2202
|||| ||.||||| ||| |||
Sbjct 1437 GATAACGCAGAGTGTCCTTCAGCTTCCACAGCCATCTTCACTGCCACACCGAAGCTCCGGGCACCTCCACCTCT 1510
Query 2203 CAGGAGCCTGG---------CTGG-----------------------------TTG------------------ 2220
|| ||||| |||| |||
Sbjct 1511 CA----CCTGGGCACTTCCACTGGCCGCCTGACACATCTTCTCACATCTGCTCTTGCTGCCATAACCCCCTCTT 1580
Query 2221 -------------GAGGGGACTCTG---AACGGAAA----------------GACTGGCCT--CAT--CCCTGA 2258
|||.|..||.|| |||||||| .|.|||||| ||| |.||||
Sbjct 1581 TACAGAGCAGCGAGAGTGATCTTTGAAAAACGGAAATGGCATTAAAGCCCTTCAGTGGCCTCCCATTGCTCTGA 1654
Query 2259 GAATTACGT----GG-------------AGTTCCTC-------------------------------------- 2277
|||||||.| || |||||||.
Sbjct 1655 GAATTACTTACAAGGCCCTCCAGGGCCCAGTTCCTGCCCCTCTGACCTCACGCCCTCACTTGACATACTACAGC 1728
Query 2278 -------------------------------------------------------------------------- 2277
Sbjct 1729 CTCATGCCTTCTTCATGTTCTCAAGCAAGGTCGGCAAACTATGACCTGCCCGTCAAATCCAACCTGCCACCTGT 1802
Query 2278 -------------------------------------------------------------------------- 2277
Sbjct 1803 CACCTAACAATTCTGTAACTGCTCCCACATACAACATGGTCGTCATCATAAATCCTATAGGTATTGTTGAGAGC 1876
Query 2278 -------------------------------------------------------------------------- 2277
Sbjct 1877 AGGAGGAAAGTTTGGTTGAGTGAGTGAGAGACCTTACCCAAGCCTTCCTGTGGTCTCTAGGAGTCATGGCAGAG 1950
Query 2278 -------------------------------------------------------------------------- 2277
Sbjct 1951 TTCGCTGACACTGGTCTGCTTTTAACCAGCCTTGCCAGTGACCTTTCAAATTCCCTGAGGAGCAAAAGGCCAAA 2024
Query 2278 -------------------------------------------------------------------------- 2277
Sbjct 2025 TTGAACCTGAAAGAAAACACCTCTCAGTGTTGACTGAGTTGCAGTAGAAAATGGACCTGACAAAACTTCACCCA 2098
Query 2278 -------------------------------------------------------------------------- 2277
Sbjct 2099 TCTCAGGAGCCTGGCTGGTTGGAGGGGACTCTGAACGGAAAGACTGGCCTCATCCCTGAGAATTACGTGGAGTT 2172
Query 2278 ----- 2277
Sbjct 2173 CCTCT 2177
