Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07957
- Subject:
- XM_005247309.2
- Aligned Length:
- 5379
- Identities:
- 2331
- Gaps:
- 3048
Alignment
Query 1 ATGCGAGGTGGCAAATGCAACATGCTCTCCAGTTTGGGGTGTCTACTTCTCTGTGGAAGTATTACACTAGCCCT 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 GGGAAATGCACAGAAATTGCCAAAAGGTAAAAGGCCAAACCTCAAAGTCCACATCAATACCACAAGTGACTCCA 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 TCCTCTTGAAGTTCTTGCGTCCAAGTCCAAATGTAAAGCTTGAAGGTCTTCTCCTGGGATATGGCAGCAATGTA 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 TCACCAAACCAGTACTTCCCTCTTCCCGCTGAAGGGAAATTCACAGAAGCTATAGTTGATGCAGAGCCGAAATA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 TCTGATAGTTGTGCGACCTGCTCCACCTCCAAGTCAAAAGAAGTCATGTTCAGGTAAAACTCGTTCTCGCAAAC 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 CTCTGCAGCTGGTGGTTGGCACTCTGACACCGAGCTCAGTCTTCCTGTCCTGGGGTTTCCTCATCAACCCACAC 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 CATGACTGGACATTGCCAAGTCACTGTCCCAATGACAGATTTTATACAATTCGCTATCGAGAAAAGGATAAAGA 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 AAAGAAGTGGATTTTTCAAATCTGTCCAGCCACTGAAACAATTGTGGAAAACCTAAAGCCCAACACAGTTTATG 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 AATTTGGAGTGAAAGACAATGTGGAAGGTGGAATTTGGAGTAAGATTTTCAATCACAAGACTGTTGTTGGAAGT 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 AAAAAAGTAAATGGGAAAATCCAAAGTACCTATGACCAAGACCACACAGTGCCAGCATATGTCCCAAGGAAACT 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 AATCCCAATAACAATCATCAAGCAAGTGATTCAGAATGTTACTCACAAGGATTCAGCTAAATCCCCAGAAAAAG 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 CTCCACTGGGAGGAGTGATACTAGTCCACCTTATTATTCCAGGTCTTAATGAAACTACTGTAAAACTTCCTGCA 888
Sbjct 1 -------------------------------------------------------------------------- 0
Query 889 TCCCTAATGTTTGAGATTTCAGATGCACTCAAGACACAATTAGCTAAGAATGAAACCTTGGCATTACCTGCCGA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ------ATGTTTGAGATTTCAGATGCACTCAAGACACAATTAGCTAAGAATGAAACCTTGGCATTACCTGCCGA 68
Query 963 ATCTAAAACACCAGAGGTTGAAAAAATCTCAGCACGACCCACAACAGTGACTCCTGAAACAGTTCCAAGAAGCA 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 ATCTAAAACACCAGAGGTTGAAAAAATCTCAGCACGACCCACAACAGTGACTCCTGAAACAGTTCCAAGAAGCA 142
Query 1037 CTAAACCCACTACGTCTAGTGCATTAGATGTTTCAGAAACAACAC----------------------------- 1081
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 CTAAACCCACTACGTCTAGTGCATTAGATGTTTCAGAAACAACACTGGTTCTCAGCAAAAGGACCCCGGAAACA 216
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 217 TTGCAAACTATTCTAATACCTCAGTTTGAATTGCCACTGAGCACTCTAGCTCCAAAAAGCCTTCCAGAATTTCC 290
Query 1082 --------------------------------------------TGGCTTCAAGTGAAAAGCCATGGATTGTGC 1111
||||||||||||||||||||||||||||||
Sbjct 291 TGAGGCAAAAACACCCTTCCCTTTTGAGAAACCTAGGGGCACATTGGCTTCAAGTGAAAAGCCATGGATTGTGC 364
Query 1112 CTACAGCTAAAATATCTGAAGATTCCAAAGTTCTGCAGCCTCAAACTGCAACTTATGATGTTTTCTCAAGCCCT 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 CTACAGCTAAAATATCTGAAGATTCCAAAGTTCTGCAGCCTCAAACTGCAACTTATGATGTTTTCTCAAGCCCT 438
Query 1186 ACAACATCAGATGAGCCTGAGATATCAGATTCCTACACAGCAACAAGTGATCGTATTCTGGATTCTATCCCACC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 ACAACATCAGATGAGCCTGAGATATCAGATTCCTACACAGCAACAAGTGATCGTATTCTGGATTCTATCCCACC 512
Query 1260 TAAAACTTCTAGAACTCTTGAACAGCCAAGGGCAACACTGGCTCCAAGTGAAACACCATTTGTTCCTCAAAAAC 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 TAAAACTTCTAGAACTCTTGAACAGCCAAGGGCAACACTGGCTCCAAGTGAAACACCATTTGTTCCTCAAAAAC 586
Query 1334 TGGAAATCTTTACCAGTCCAGAAATGCAGCCTACGACACCTGCTCCCCAGCAAACTACATCTATCCCTTCTACA 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TGGAAATCTTTACCAGTCCAGAAATGCAGCCTACGACACCTGCTCCCCAGCAAACTACATCTATCCCTTCTACA 660
Query 1408 CCTAAACGACGCCCCCGGCCCAAACCGCCAAGAACCAAACCTGAAAGAACCACAAGTGCCGGAACAATTACACC 1481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCTAAACGACGCCCCCGGCCCAAACCGCCAAGAACCAAACCTGAAAGAACCACAAGTGCCGGAACAATTACACC 734
Query 1482 TAAAATTTCTAAAAGCCCTGAACCTACATGGACAACACCGGCTCCCGGTAAAACACAATTTATTTCTCTGAAAC 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 TAAAATTTCTAAAAGCCCTGAACCTACATGGACAACACCGGCTCCCGGTAAAACACAATTTATTTCTCTGAAAC 808
Query 1556 CTAAAATCCCTCTCAGCCCAGAAGTGACACACACCA-------------------------------------- 1591
||||||||||||||||||||||||||||||||||||
Sbjct 809 CTAAAATCCCTCTCAGCCCAGAAGTGACACACACCAAACCTGCCCCAGAACCTCAGACTCTACTGCCATCACAG 882
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 883 TCAACAATAGGACCTGAAACACCAGGAACCAAACCTTCAACAACATTAGCACCACGAAAGACCAAAAGACCAGG 956
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 957 TCGTCGCCCCCGCCCCCGTCCCCGCCCTAAAACCACACCTAGTCCAGAAGTGCCCAAGTCCAAACCCGCTCTGG 1030
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 1031 AACCTGCCACGATACAACCGGAGCCCTTGGTGCCCACAACTGCCTCAAAACCATCTGAGAGACCTAAAACCACA 1104
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 1105 CACAGACCAGATGCACCTCAAATTCAGCCTGGTTCAAAACCACCAAAACAATTACTTCCTAAACCCCAAACCAC 1178
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 1179 AGCAGAACCAGACATGCCACCAACTAAATCCGTCTCTGAGCCTGTTCCATTTGAAACTGAAGCTCCCTCAATGA 1252
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 1253 CCATAGTTCCCACCACAGACATTGAGCCTGTAACTGTGAGAACTGAGGCTACAGTGACAACATTAGCTCCAAAA 1326
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 1327 ACATCGCAACGAACAAGAACACGTCGTCCACGTCCCAAACATAAAACCACGCCACGCCCAGAGACACTGCAGAC 1400
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 1401 CAAACTAGACTTTGGACCTATTACTCCTGGGACATCTTCAGCTCCAACAACAACAACAAAAAGAACCCGTCGTC 1474
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 1475 CACATCCCAAACCTAAAACCACGCCCCATCCAGAAGTACCTCAAACTAAACTGGTTCCTGCCACAATCCTCGAA 1548
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 1549 CCAGTTCTTAGAACTGAGGCTTCAGGGACAACAGCAGCTCCCAAAGTGCCTCAACGAACTCATCGTCCACATCC 1622
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 1623 CAAACCTAAAACCACACTGAGTCCCGAAGAGCTTCAGACTGAACTGGTTCCTGCTACAATCTTTGAACCAGTTT 1696
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 1697 CTCCTATAAAAGAGGCTCCAGGGACAACATTCGTTCCTGTTACAGACCTCGAGCCTGTTACTTTTAGAACTGAG 1770
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 1771 ATCCCTGCAACAACCTTAGCTACCAAAACATCAAAAAGAACCCGCCCTCCACGTCCCAGACCTAAAACTACACC 1844
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 1845 GAGCCCTCAGGCACCTGAGACCAAACCTGTTCCTGCTACAGTCCTAGAACCTGTCACTCTTAGACCTGAGGCCT 1918
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 1919 CAACAACATTAGCTTCCAAAACATCACAACGGACACGTCGTCCACGTCTCAGAACAAAAACCACACCACGTCCT 1992
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 1993 GAAGCACCTGAATCCAAACCAGTTCCTACTGCGGAGCTCAAACCTGTTACACTCAGAACTGAGACTTGGGTGAC 2066
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 2067 AACACAAGCTCCTAAAACATCACAACGAACTCGTCGTCCACGTCCCAAAACTAAAACCACACCAAGTCCTGAGG 2140
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 2141 TTCCTCAAACCAAACTGGTTCCTTCTACAGATCTTGAACCTGGTACTCTCAGAACTGAAGCTCCAAAAACCATG 2214
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 2215 GTTGTTACTACAGTCCTTGAACCTGACACTTTTAGAACCAAGTTTCCAGAAACAACGTTAGCTCCTAAAACACA 2288
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 2289 ACGGACACGTCGTCCCCGTCCCAGACCCAAAACTACATCAAGTCCTGAAGTACCTCAGAACAAATCGGTTTCTG 2362
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 2363 TTACAGGCTTTGAACCTGTTGTTCATAGTACTGATGCTCCAGGAACAACATTTGCTCTGACTGAACTGCAAACT 2436
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 2437 CTTATTTTGAAACCAGTGACATCACCAAGCCTAGAAATGACAGAAAGTCAACCTGTTTCTGATGTTCTGGAATC 2510
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 2511 GGTTACACTTAGTACTGAGTCACCAAAGGAGACCATAGCACCAGCCAAAACAGACTATGTATATCCCACTGCCA 2584
Query 1592 -------------------------------------------------------------------------- 1591
Sbjct 2585 AAGCACCACTCTGGCCAGAGGAGCCAAAGACTGAAGTTGTGGAATCTATTACATATGTATCTGAACCACCTGAG 2658
Query 1592 ----------------------------------------------------------------------AACC 1595
||||
Sbjct 2659 ACCACACTAGAAACGTCGCCTCTGCCTTCTCAATCTATAACCCTACCCAGCCCAGATGAGCCTCAGACTGAACC 2732
Query 1596 TGCTCCCAAGCAGACACCACGTGCTCCTCCTAAGCCAAAAACATCACCACGCCCAAGAATCCCACAAACACAAC 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2733 TGCTCCCAAGCAGACACCACGTGCTCCTCCTAAGCCAAAAACATCACCACGCCCAAGAATCCCACAAACACAAC 2806
Query 1670 CAGTTCCTAAGGTGCCCCAGCGTGTTACTGCAAAACCAAAAACGTCACCAAGTCCAGAAGTGTCATACACCACA 1743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2807 CAGTTCCTAAGGTGCCCCAGCGTGTTACTGCAAAACCAAAAACGTCACCAAGTCCAGAAGTGTCATACACCACA 2880
Query 1744 CCTGCTCCAAAAGATGTGCTCCTTCCTCATAAACCATACCCTGAGGTCTCTCAGAGCGAACCT----------- 1806
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2881 CCTGCTCCAAAAGATGTGCTCCTTCCTCATAAACCATACCCTGAGGTCTCTCAGAGCGAACCTGTTCTGCAGCC 2954
Query 1807 -------------------------------------GCTCCTCTAGAGACACGAGGCATCCCTTTTATACCCA 1843
|||||||||||||||||||||||||||||||||||||
Sbjct 2955 TGTTACCTTTAGATTTGAGCCACCAAAGACAACAATAGCTCCTCTAGAGACACGAGGCATCCCTTTTATACCCA 3028
Query 1844 TGATTTCCCCAAGTCCTAGTCAAGAGGAACTACAGACCACTCTGGAAGAAACAGACCAATCCACCCAAGAACCT 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3029 TGATTTCCCCAAGTCCTAGTCAAGAGGAACTACAGACCACTCTGGAAGAAACAGACCAATCCACCCAAGAACCT 3102
Query 1918 TTCACAACTAAGATTCCACGAACAACTGAACTAGCAAAGACAACTCAGGCGCCACACAGATTTTATACTACTGT 1991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3103 TTCACAACTAAGATTCCACGAACAACTGAACTAGCAAAGACAACTCAGGCGCCACACAGATTTTATACTACTGT 3176
Query 1992 GAGGCCCAGAACATCTGACAAGCCACACATCAGACCT------------------------------------- 2028
|||||||||||||||||||||||||||||||||||||
Sbjct 3177 GAGGCCCAGAACATCTGACAAGCCACACATCAGACCTGTTCTGAATAGGACAACTACAAGACCTACTAGGCCCA 3250
Query 2029 --------------------------------------GGGGTCAAGCAAGCACCCAGGCCATCAGGTGCTGAT 2064
||||||||||||||||||||||||||||||||||||
Sbjct 3251 AACCCAGTGGGATGCCCAGTGGGAATGGAGTGGGAACAGGGGTCAAGCAAGCACCCAGGCCATCAGGTGCTGAT 3324
Query 2065 AGAAATGTATCAGTGGACTCTACCCACCCCACTAAAAAGCCAGGGACTCGCCGCCCACCCTTGCCACCCAGACC 2138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3325 AGAAATGTATCAGTGGACTCTACCCACCCCACTAAAAAGCCAGGGACTCGCCGCCCACCCTTGCCACCCAGACC 3398
Query 2139 TACACACCCACGAAGAAAACCTTTACCACCAAATAATGTCACTGGAAAGCCAGGAAGTGCAGGAATCATTTCAT 2212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3399 TACACACCCACGAAGAAAACCTTTACCACCAAATAATGTCACTGGAAAGCCAGGAAGTGCAGGAATCATTTCAT 3472
Query 2213 CAGGCCCAATAACTACACCACCCCTGAGGTCAACACCCAGGCCTACTGGAACTCCCTTGGAGAGAATAGAGACA 2286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3473 CAGGCCCAATAACTACACCACCCCTGAGGTCAACACCCAGGCCTACTGGAACTCCCTTGGAGAGAATAGAGACA 3546
Query 2287 GATATAAAGCAACCAACAGTTCCTGCCTCTGGAGAAGAACTGGAAAATATAACTGACTTTAGCTCAAGCCCAAC 2360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3547 GATATAAAGCAACCAACAGTTCCTGCCTCTGGAGAAGAACTGGAAAATATAACTGACTTTAGCTCAAGCCCAAC 3620
Query 2361 AAGAGAAACTGATCCTCTTGGGAAGCCAAGATTCAAAGGACCTCATGTGCGATACATCCAAAAGCCTGACAACA 2434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3621 AAGAGAAACTGATCCTCTTGGGAAGCCAAGATTCAAAGGACCTCATGTGCGATACATCCAAAAGCCTGACAACA 3694
Query 2435 GTCCCTGCTCCATTACTGACTCTGTCAAACGGTTCCCCAAAGAGGAGGCCACAGAGGGGAATGCCACCAGCCCA 2508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3695 GTCCCTGCTCCATTACTGACTCTGTCAAACGGTTCCCCAAAGAGGAGGCCACAGAGGGGAATGCCACCAGCCCA 3768
Query 2509 CCACAGAACCCACCCACCAACCTCACTGTGGTCACCGTGGAAGGGTGCCCCTCATTTGTCATCTTGGACTGGGA 2582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3769 CCACAGAACCCACCCACCAACCTCACTGTGGTCACCGTGGAAGGGTGCCCCTCATTTGTCATCTTGGACTGGGA 3842
Query 2583 AAAGCCACTAAATGACACTGTCACTGAATATGAAGTTATATCCAGAGAAAATGGGTCATTCAGTGGGAAGAACA 2656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3843 AAAGCCACTAAATGACACTGTCACTGAATATGAAGTTATATCCAGAGAAAATGGGTCATTCAGTGGGAAGAACA 3916
Query 2657 AGTCCATTCAAATGACAAATCAGACATTTTCCACAGTAGAAAATCTGAAACCAAACACGAGTTATGAATTCCAG 2730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3917 AGTCCATTCAAATGACAAATCAGACATTTTCCACAGTAGAAAATCTGAAACCAAACACGAGTTATGAATTCCAG 3990
Query 2731 GTGAAACCCAAAAACCCGCTTGGTGAAGGCCCGGTCAGCAACACAGTGGCATTCAGTACTGAATCAGCGGACCC 2804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3991 GTGAAACCCAAAAACCCGCTTGGTGAAGGCCCGGTCAGCAACACAGTGGCATTCAGTACTGAATCAGCGGACCC 4064
Query 2805 AAGAGTGAGTGAGCCAGTTTCTGCAGGAAGAGATGCCATCTGGACTGAAAGACCCTTTAATTCAGACTCTTACT 2878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4065 AAGAGTGAGTGAGCCAGTTTCTGCAGGAAGAGATGCCATCTGGACTGAAAGACCCTTTAATTCAGACTCTTACT 4138
Query 2879 CAGAGTGTAAGGGCAAACAATATGTCAAAAGGACATGGTATAAAAAATTTGTAGGAGTGCAGCTGTGCAACTCT 2952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4139 CAGAGTGTAAGGGCAAACAATATGTCAAAAGGACATGGTATAAAAAATTTGTAGGAGTGCAGCTGTGCAACTCT 4212
Query 2953 CTCAGATACAAGATTTACTTGAGCGACTCCCTCACAGGAAAATTTTATAACATAGGTGATCAGAGGGGCCATGG 3026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4213 CTCAGATACAAGATTTACTTGAGCGACTCCCTCACAGGAAAATTTTATAACATAGGTGATCAGAGGGGCCATGG 4286
Query 3027 AGAAGATCACTGCCAGTTTGTGGATTCATTTTTAGATGGACGCACTGGGCAGCAACTCACTTCTGACCAGTTAC 3100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4287 AGAAGATCACTGCCAGTTTGTGGATTCATTTTTAGATGGACGCACTGGGCAGCAACTCACTTCTGACCAGTTAC 4360
Query 3101 CAATCAAAGAAGGTTATTTCAGAGCAGTTCGCCAGGAACCTGTCCAATTTGGAGAAATAGGTGGTCACACCCAA 3174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4361 CAATCAAAGAAGGTTATTTCAGAGCAGTTCGCCAGGAACCTGTCCAATTTGGAGAAATAGGTGGTCACACCCAA 4434
Query 3175 ATCAATTATGTTCAGTGGTATGAATGTGGGACTACAATTCCTGGAAAATGG 3225
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4435 ATCAATTATGTTCAGTGGTATGAATGTGGGACTACAATTCCTGGAAAATGG 4485
