Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08060
- Subject:
- XR_387726.3
- Aligned Length:
- 2489
- Identities:
- 1438
- Gaps:
- 837
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCGCCCCTTCGCGGTCCCCTCCATCCCTTCCCCGCTGCATCGCCGCCCTACAGCCCCCGCTCTGTGGCGGCCGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCGAGACACGTGTGCCCGCGCCCGGCGGGCGTGCGGGGAAGCGCGGCCACGCCTGGTCCGGCCACCATTTCTCC 148
Query 1 ---------------------------------ATGAGCGCGGGCTCGGAGCGCGGGGCGGCGGCAACCCCCGG 41
|||||||..|.|||||||||||.||.|| ||||||
Sbjct 149 GGCGCCCACCGGTTCGAGTGCGGAGCCTGAAGCATGAGCGGCGACTCGGAGCGCGCGGTGG-------CCCCGG 215
Query 42 GGGT-TTGCCCGCGCCCTGCGCCTCGAAGGTGGAGCTGCGGCTCAGCTGCCGGCACCTGCTGGACCGCGACCCG 114
|||| .||||.||.|||||||||||||||||||||||||||||.|||||||||||||||||||||||.|||||.
Sbjct 216 GGGTGGTGCCTGCACCCTGCGCCTCGAAGGTGGAGCTGCGGCTGAGCTGCCGGCACCTGCTGGACCGGGACCCA 289
Query 115 CTCACCAAGTCCGACCCCAGCGTGGCGTTGCTGCAGCAGGCGCAGGGCCAGTGGGTGCAGGTGGGCAGAACCGA 188
.|.||||||||||||||||||||||.|.|||||||||||||.||||||||||||.|.|||||||.||||||.||
Sbjct 290 TTGACCAAGTCCGACCCCAGCGTGGTGCTGCTGCAGCAGGCACAGGGCCAGTGGCTACAGGTGGACAGAACAGA 363
Query 189 GGTGGTCCGGAGCAGCCTGCATCCCGTGTTCTCCAAGGTCTTCACGGTGGACTACTACTTCGAGGAGGTGCAGA 262
||||||...|||||||||||||||.||||||||||||||||||||.||.||||||||||||||||.||||||||
Sbjct 364 GGTGGTGAAGAGCAGCCTGCATCCTGTGTTCTCCAAGGTCTTCACTGTCGACTACTACTTCGAGGGGGTGCAGA 437
Query 263 GGCTGCGCTTTGAGGTGTACGACACGCATGGGCCCAGCGGCTTCAGCTGTCAGGAGGACGATTTCCTGGGGGGC 336
.|||.||.|||||||||||.|||||.||.|||||.||.||..|.|..||.|||||.||.||.|||||.||||||
Sbjct 438 AGCTACGGTTTGAGGTGTATGACACCCACGGGCCTAGTGGGCTGACTTGCCAGGATGATGACTTCCTAGGGGGC 511
Query 337 ATGGAGTGCACCCTGGGGCAGATTGTGGCCCAGAAGAAGGTGACCCGCCCGCTGCTGCT-CAAGTTTGGCAGGA 409
||||||||.||||||||.||.||||||||||||||||||.||||.||.||..|||||.| |.| ||.|||||||
Sbjct 512 ATGGAGTGTACCCTGGGTCAAATTGTGGCCCAGAAGAAGATGACACGGCCATTGCTGTTGCGA-TTCGGCAGGA 584
Query 410 ACGCTGGCAAGTCCACCATCACGGTGATCGCCGAGGACATCTCGGGGAACAACGGCTACGTGGAGCTCTCCTTC 483
|.||||||||||||||||||||||||||.||.|||||||||||.||||||||||||||.|||||||||||||||
Sbjct 585 ATGCTGGCAAGTCCACCATCACGGTGATAGCAGAGGACATCTCTGGGAACAACGGCTATGTGGAGCTCTCCTTC 658
Query 484 CGGGCCAGGAAGCTGGACGACAAGGACCTCTTCAGCAAGTCCGACCCCTTCCTGGAGCTCTACAGGGTCAACGA 557
|.||||.||||.|||||.|||||||||||||||||||||||.|||||||||||.|||||.||..||||.||.||
Sbjct 659 CAGGCCCGGAAACTGGATGACAAGGACCTCTTCAGCAAGTCGGACCCCTTCCTAGAGCTGTATCGGGTTAATGA 732
Query 558 CGACCAGGGCTT--GCAGCTGGTGTACAGGACGGAGGTGGTGAAGAACAACCTGAACCCGGTGTGGGAGGCCTT 629
|||| |||..| ||||||.|||||||||||.|||||.|||||||||||.||.|||||.||||||||..||||
Sbjct 733 CGAC--GGGAGTGAGCAGCTCGTGTACAGGACAGAGGTAGTGAAGAACAATCTTAACCCAGTGTGGGAACCCTT 804
Query 630 CAAAGTCTCTCTGAGTTCCCTCTGCAGCTGCGAGGAGACAAGGCCTCTAAAGTGCCTGGTCTGGGATTACGACT 703
|||.||.||.||||.|||.|||||||||||||||||||||.|||||||.|||||||||||||||||.||.||||
Sbjct 805 CAAGGTGTCCCTGAATTCACTCTGCAGCTGCGAGGAGACACGGCCTCTGAAGTGCCTGGTCTGGGACTATGACT 878
Query 704 CTCGAGGAAAGCACGACTTCATCGGAGAATTCTCTACCACCTTCGAGGAGATGCAGAAGGCCTTTGAGGAGG-- 775
|.|||||||||||.||||||||.||.||.|||.|.|||||.||||..|||||||||||||||||||||||||
Sbjct 879 CCCGAGGAAAGCATGACTTCATTGGCGACTTCACCACCACGTTCGCAGAGATGCAGAAGGCCTTTGAGGAGGAG 952
Query 776 -GGCAGGCCCAGTGGGACTGTGTGAACCCCAAATACAAGCAGAAGAGACGCAGTTATAAGAACTCAGGAGTGGT 848
.||||||||||||||||||||||||..||||.|||||.|||||||..||||.|||.|||||.||.||.|||||
Sbjct 953 CAGCAGGCCCAGTGGGACTGTGTGAATGCCAAGTACAAACAGAAGAAGCGCAATTACAAGAATTCCGGGGTGGT 1026
Query 849 CGTCCTGGCTGACCTCAAGTTCCACAGGGTGTACTCCTTCCTGGACTATATCATGGGCGGCTGCCAGATCCACT 922
..|||||||.|||||.|||.||||||||||..|||||||||||||.||.||||||||.||||||||||||||||
Sbjct 1027 GATCCTGGCAGACCTGAAGCTCCACAGGGTCCACTCCTTCCTGGATTACATCATGGGTGGCTGCCAGATCCACT 1100
Query 923 TCACCGTGGCCATTGACTTCACCGCCTCCAATGGAGACCCGCGGAACAGCTGCTCCCTGCACTACATCAACCCC 996
..||.||.|||||.||||||||.||||||||.||.||||||.||||||||||||||||.|||.||||||||||.
Sbjct 1101 GTACGGTAGCCATCGACTTCACAGCCTCCAACGGTGACCCGAGGAACAGCTGCTCCCTCCACCACATCAACCCT 1174
Query 997 TACCAGCCGAACGAGTACCTGAAGGCACTGGTGTCCGTGGGCGAGATCTGCCAGGACTATGACAGTGACAAGAG 1070
||||||||.|||||||||||||.||||.|||||.|.|||||||||.||||||||||.|||||||||||||||.|
Sbjct 1175 TACCAGCCCAACGAGTACCTGAGGGCATTGGTGGCAGTGGGCGAGGTCTGCCAGGATTATGACAGTGACAAGCG 1248
Query 1071 GTTTTCCGCTTTGGGGTTTGGAGCCCGGATCCCTCCCAAGTATGAGGTGTCCCATGACTTTGCCATCAATTTCA 1144
||||||.|||.||||.||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct 1249 GTTTTCTGCTCTGGGATTTGGAGCCCGGATCCCTCCCAAGTATGAGGTGTCCCACGACTTTGCCATCAATTTCA 1322
Query 1145 ACCCTGAGGACGATGAGTGTGAAGGCATCCAGGGCGTGGTGGAGGCCTACCAGAACTGCCTGCCCAGGGTCCAG 1218
|||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||.|.|||.|||
Sbjct 1323 ACCCTGAGGACGATGAGTGTGAAGGAATCCAGGGCGTGGTGGAGGCCTACCAGAACTGCCTGCCGAAGGTTCAG 1396
Query 1219 CTCTACGGCCCCACCAACGTGGCGCCCATCATCTCCAAGGTGGCACGCGTGGCGGCGGCCGAGGAGAGCACCGG 1292
|||||||||||||||||||||||.|||||||||||.||||||||.|||.||||.|||||.|||||||||||.||
Sbjct 1397 CTCTACGGCCCCACCAACGTGGCACCCATCATCTCTAAGGTGGCCCGCATGGCAGCGGCTGAGGAGAGCACAGG 1470
Query 1293 GAAAGCCTCT----CAATACTACATCCTGCTGATCCTGACGGACGGCGTGGTGACCGACATGGCCGACACACGG 1362
..|.||.||| |||||.|||||.|||||||||||.||||||||.||||||||.||.|||.|.|||||.||.
Sbjct 1471 AGAGGCTTCTGTAGCAATATTACATACTGCTGATCCTCACGGACGGTGTGGTGACGGATATGTCGGACACTCGA 1544
Query 1363 GAGGCCATTGTGCGTGCCTCACGCCTGCCCATGTCCATCATCATCGTGGGCGTGGGCAACGCCGACTTCACCGA 1436
||||||||||||||||||||.|.||||||||||||..|||||||.||.||.|||||||||||.||||||||.||
Sbjct 1545 GAGGCCATTGTGCGTGCCTCCCACCTGCCCATGTCTGTCATCATTGTTGGGGTGGGCAACGCTGACTTCACAGA 1618
Query 1437 CATGCAGGTCCTGGACGGCGACGACGGCGTCCTGCGCTCCCCACGGGGTGAGCCCGCGCTCCGGGACATCGTAC 1510
.|||||..||.|.|||||.||.||.||.||||||||.|||||||||||.|||||.||.||||||||||||||.|
Sbjct 1619 TATGCAAATCTTAGACGGGGATGATGGAGTCCTGCGTTCCCCACGGGGCGAGCCTGCACTCCGGGACATCGTTC 1692
Query 1511 AGTTCGTGCCCTTCCGGGAGCTCAAGAACGCATCCCCTGCGGCGCTGGCCAAGTGCGTGCTGGCCGAGGTCCCG 1584
||||.|||||||||||.|||||.||||||||||||||.||.||.|||||||||||.|||.||||||||||.||.
Sbjct 1693 AGTTTGTGCCCTTCCGTGAGCTAAAGAACGCATCCCCCGCAGCACTGGCCAAGTGTGTGTTGGCCGAGGTGCCA 1766
Query 1585 AAGCAGGTGGTGGAGTACTACAGCCACA--GAGGCCTGCCCCCGAGAAGCCTGGGCGTCCCTG-CCGGAGAG-- 1653
|||||||||||.||.||||||||||||| ||| |||||.||..|||||||.|||| |||.| |.||||||
Sbjct 1767 AAGCAGGTGGTTGAATACTACAGCCACAAGGAG--CTGCCTCCTCGAAGCCTTGGCG-CCCAGACTGGAGAGGC 1837
Query 1654 ----GCCAGCCCAGGCTGCACACCG------------------------------------------------- 1674
||||||.||| ||
Sbjct 1838 TGCTGCCAGCTCAG---------CGCCATGAGGATGTCAGGGGAGGGAGCAGTACGTCCGTCCATCTATGGCAT 1902
Query 1675 -------------------------------------------------------------------------- 1674
Sbjct 1903 CTCCCGTGCCCCCAGAAATCCTCAGAAACTGATCACCCAGCCCAGGCCTCCCAGCCCTGCTCCTGTGTTCTGCT 1976
Query 1675 -------------------------------------------------------------------------- 1674
Sbjct 1977 GGCCTGCGTCAGTGGCCTGGTCCCCAACATGAAGAGATCTAGGCCTTGTGGCTTGACAGAAATTAGCAGCTCCC 2050
Query 1675 -------------------------------------------------------------------------- 1674
Sbjct 2051 CCAGCTCTGGGCCTCCCTGCACCCAACAGGCAAGGAGCAGGGTGTTCTGAAAGAAATGGGGCTGCAAAGATGCT 2124
Query 1675 -------------------------------------------------------------------------- 1674
Sbjct 2125 CTCCCCTCTTGCTTGAGGTCACTCTCCTGTCAATCATAGCACCACTTCAGAAGAGCCCTCAAGCCCAGCTTGGC 2198
Query 1675 -------------------------------------------------------------------------- 1674
Sbjct 2199 CCAGAGAGATGGGTGGGATCGCTCCTGTTATAATCCTGGCAGCTCAGCTATGGAAAGGGTGGTGAAGGGGTGGT 2272
Query 1675 -------------------------------------------------------------------------- 1674
Sbjct 2273 CGACCTGGACAATCTTGCCATTTGATCGTGTGGAGAGAGGAAGTACCCCAAGCCTTGAGGACACCCATATCTGG 2346
Query 1675 -------------------------------------------------------------------------- 1674
Sbjct 2347 GCACTTTGTCCCCATAGGTTTCTCTGTCCTGTCTGGTGCCTCTCCAACCTGTACCCACACCTGGAGCCTGCGGG 2420
Query 1675 ----------------------------------------------- 1674
Sbjct 2421 GCCTGGGAGACAGCTTAGGGTGTAATAAAGTATCCCTCATTCTCACA 2467
