Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08070
- Subject:
- NM_001164556.1
- Aligned Length:
- 2496
- Identities:
- 584
- Gaps:
- 1893
Alignment
Query 1 ATGCCAGGCGGGGGTCCTCAGGGCGCCCCAGCCGCCGCCGGCGGCGGCGGCGTGAGCCACCGCGCAGGCAGCCG 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 GGATTGCTTACCACCTGCAGCGTGCTTTCGGAGGCGGCGGCTGGCACGGAGGCCGGGCTACATGAGAAGCTCGA 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 CAGGGCCTGGGATCGGGTTCCTTTCCCCAGCAGTGGGCACACTGTTCCGGTTCCCAGGAGGGGTGTCTGGCGAG 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 GAGTCCCACCACTCGGAGTCCAGGGCCAGACAGTGTGGCCTTGACTCGAGAGGCCTCTTGGTCCGGAGCCCTGT 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 TTCCAAGAGTGCAGCAGCCCCTACTGTGACCTCTGTGAGAGGAACCTCGGCGCACTTTGGGATTCAGCTCAGAG 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 GTGGCACCAGATTGCCTGACAGGCTTAGCTGGCCGTGTGGCCCTGGGAGTGCTGGGTGGCAGCAAGAGTTTGCA 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 GCCATGGATAGTTCTGAGACCCTGGACGCCAGCTGGGAGGCAGCCTGCAGCGATGGAGCAAGGCGTGTCCGGGC 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 AGCAGGCTCTCTGCCATCAGCAGAGTTGAGTAGCAACAGCTGCAGCCCTGGCTGTGGCCCTGAGGTCCCCCCAA 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 CCCCTCCTGGCTCTCACAGTGCCTTTACCTCAAGCTTTAGCTTTATTCGGCTCTCGCTTGGCTCTGCCGGGGAA 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 CGTGGAGAAGCAGAAGGCTGCCCACCATCCAGAGAGGCTGAGTCCCATTGCCAGAGCCCCCAGGAGATGGGAGC 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 CAAAGCTGCCAGCTTGGACGGGCCTCACGAGGACCCGCGATGTCTCTCTCAGCCCTTCAGTCTCTTGGCTACAC 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 GGGTCTCTGCAGACTTGGCCCAGGCCGCAAGGAACAGCTCCAGGCCAGAGCGTGACATGCATTCTTTACCAGAC 888
Sbjct 1 -------------------------------------------------------------------------- 0
Query 889 ATGGACCCTGGCTCCTCCAGTTCTCTGGATCCCTCACTGGCTGGCTGTGGTGGTGATGGGAGCAGCGGCTCAGG 962
Sbjct 1 -------------------------------------------------------------------------- 0
Query 963 GGATGCCCACTCTTGGGACACCCTGCTCAGGAAATGGGAGCCAGTGCTGCGGGACTGCCTGCTGAGAAACCGGA 1036
||| |||..|..||| |.|||| |||.|||...||.||.| ||||.
Sbjct 1 --ATG-CCAGGCGGGGG------TCCTCA------GGGCGCCCCAGCCGCCG-----------------CCGGC 42
Query 1037 GGCAGATGGAGGTAATATCCTTAAGATTAAAACTTCAGAAACTTCAGGAAGATGCAGTTGAGAATGATGATTAT 1110
||| ||.|| |.|.||..||..| ||
Sbjct 43 GGC----GGCGG--------------------CGTGAGCCACCGC--------GC------------------- 65
Query 1111 GATAAAGCTGAGACGTTACAACAAAGATTAGAAGACCTGGAACAAGAGAAAATCAGCCTGCACTTTCAACTTCC 1184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 -----AGCTGAGACGTTACAACAAAGATTAGAAGACCTGGAACAAGAGAAAATCAGCCTGCACTTTCAACTTCC 134
Query 1185 TTCAAGGCAGCCAGCTCTTAGCAGTTTCCTGGGTCACCTGGCAGCACAAGTCCAGGCTGCCTTGCGCCGTGGGG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 TTCAAGGCAGCCAGCTCTTAGCAGTTTCCTGGGTCACCTGGCAGCACAAGTCCAGGCTGCCTTGCGCCGTGGGG 208
Query 1259 CCACTCAGCAGGCCAGCGGAGATGACACCCACACCCCACTGAGAATGGAGCCGAGGCTGTTGGAACCCACTGCT 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 CCACTCAGCAGGCCAGCGGAGATGACACCCACACCCCACTGAGAATGGAGCCGAGGCTGTTGGAACCCACTGCT 282
Query 1333 CAGGACAGCTTGCACGTGTCCATCACGAGACGAGACTGGCTTCTTCAGGAAAAGCAGCAGCTACAGAAAGAAAT 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 CAGGACAGCTTGCACGTGTCCATCACGAGACGAGACTGGCTTCTTCAGGAAAAGCAGCAGCTACAGAAAGAAAT 356
Query 1407 CGAAGCTCTCCAAGCAAGGATGTTTGTGCTGGAAGCCAAAGATCAACAGCTGAGAAGGGAAATAGAGGAGCAAG 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CGAAGCTCTCCAAGCAAGGATGTTTGTGCTGGAAGCCAAAGATCAACAGCTGAGAAGGGAAATAGAGGAGCAAG 430
Query 1481 AGCAGCAACTCCAGTGGCAGGGCTGCGACCTGACCCCACTGGTGGGCCAGCTGTCCCTGGGTCAGCTGCAGGAG 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 AGCAGCAACTCCAGTGGCAGGGCTGCGACCTGACCCCACTGGTGGGCCAGCTGTCCCTGGGTCAGCTGCAGGAG 504
Query 1555 GTCAGCAAGGCCTTGCAGGACACCCTGGCCTCAGCCGGTCAGATTCCCTTCCATGCAGAGCCACCGGAAACCAT 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 GTCAGCAAGGCCTTGCAGGACACCCTGGCCTCAGCCGGTCAGATTCCCTTCCATGCAGAGCCACCGGAAACCAT 578
Query 1629 AAGGAGCCTCCAGGAAAGAATAAAATCCCTCAACTTGTCACTTAAAGAAATCACTACTAAGGTGTGTATGAGTG 1702
||||
Sbjct 579 AAGG---------------------------------------------------------------------- 582
Query 1703 AGAAATTCTGCAGCACCCTGAGGAAGAAAGTTAACGATATTGAAACCCAACTACCAGCCTTGCTTGAAGCCAAA 1776
Sbjct 583 -------------------------------------------------------------------------- 582
Query 1777 ATGCATGCCATATCAGGAAACCATTTCTGGACGGCTAAAGACCTCACCGAGGAGATTAGATCATTAACATCAGA 1850
|||||||||||||||||||||
Sbjct 583 --------------AGGAAACCATTTCTGGACGGC--------------------------------------- 603
Query 1851 GAGAGAAGGGCTGGAGGGACTCCTCAGCAAGCTGTTGGTGTTGAGTTCCAGGAATGTCAAAAAGCTGGGAAGTG 1924
Sbjct 604 -------------------------------------------------------------------------- 603
Query 1925 TTAAAGAAGATTACAACAGACTGAGAAGAGAAGTGGAGCACCAGGAGACTGCCTATGAAACAAGTGTGAAGGAA 1998
Sbjct 604 -------------------------------------------------------------------------- 603
Query 1999 AATACTATGAAGTACATGGAAACACTTAAGAATAAACTGTGCAGCTGCAAGTGTCCACTGCTTGGGAAAGTGTG 2072
Sbjct 604 -------------------------------------------------------------------------- 603
Query 2073 GGAAGCTGACTTGGAAGCTTGTCGATTGCTTATCCAGAGCCTACAGCTCCAGGAAGCCAGGGGAAGCCTGTCTG 2146
Sbjct 604 -------------------------------------------------------------------------- 603
Query 2147 TAGAAGATGAGAGGCAGATGGATGACTTAGAGGGAGCTGCTCCTCCTATTCCCCCCAGGCTCCACTCCGAGGAT 2220
Sbjct 604 -------------------------------------------------------------------------- 603
Query 2221 AAAAGGAAGACCCCTTTGAAGGAATCTTACATCCTTTCTGCAGAACTTGGAGAAAAGTGTGAAGACATAGGCAA 2294
Sbjct 604 -------------------------------------------------------------------------- 603
Query 2295 GAAGCTATTGTACTTGGAAGATCAACTTCACACAGCAATCCACAGTCATGATGAAGATCTCATTCAGTCTCTCA 2368
Sbjct 604 -------------------------------------------------------------------------- 603
Query 2369 GGAGGGAGCTCCAGATGGTGAAGGAAACTCTGCAGGCCATGATCCTGCAGCTCCAGCCAGCAAAGGAGGCGGGA 2442
Sbjct 604 -------------------------------------------------------------------------- 603
Query 2443 GAAAGAGAAGCTGCAGCTTCCTGCATGACAGCTGGTGTCCACGAAGCACAAGCC 2496
Sbjct 604 ------------------------------------------------------ 603
