Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_08070
• Subject: NR_028397.1
• Aligned Length: 3399
• Identities: 2264
• Gaps: 1008

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACGTGAGAGGAGACTTCCGGCCACTGCGTTGTAGTCGGCCCGGCTGCAAAGCGTTTTTCTGCAGGCTGTTTTCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAGGTTCCCTCGGCCTGTACCTCGCGCACTCCTCTTGCTCCAGGTCCTTCAGTCTCCGCTCGTCTCACCGTAGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTGTGACGACATGAGCAACAAAGAAGGATCAGGAGGGTTCAGGAAAAGGAAGCATGACAATTTCCCACATAACC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAAGAAGAGAAGGGAAGGATGTTAATTCATCTTCACCCGTGATGTTGGCCTTTAAATCATTTCAGCAGGAACTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GATGCAAGGCATGACAAATATGAGAGACTTGTGAAACTTAGTCGGGATATAACTGTTGAAAGTAAAAGGACAAT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTTTCTCCTCCATAGGATTACAAGTGCTCCTGATATGGAAGATATATTGACTGAATCAGAAATTAAATTGGATG  444

Query    1  ----------------ATGCCAGGCGGGGGTCC---------TCAGGG-------CGCCCCAG--CCGCC--GC  38
                            ||.|||||..|    ||         ||||||       .||..|||  ||..|  ||
Sbjct  445  GTGTCAGACAAAAGATATTCCAGGTAG----CCCAAGAGCTATCAGGGGAAGATATGCATCAGTTCCATCGAGC  514

Query   39  C--------------------------GGCGGCGG---------------------------------------  47
            |                          ||..||.|                                       
Sbjct  515  CATTACTACAGGACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTA  588

Query   48  ---------------------------------CGGCGTG-AGCCACCGCGCA------------GGCAGCCGG  75
                                             ||.| || ||.||..|.|.|            .||||||||
Sbjct  589  GTATGGATGAAATTAATAAACAATTGATATTTACGAC-TGAAGACAATGGGAAAGAAAATAAAACTGCAGCCGG  661

Query   76  GATTGCTTACCACCTGCAGCGTGCTTTCGGAGGCGGCGGCTGGCACGGAGGCCGGGCTACATGAGAAGCTCGAC  149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  662  GATTGCTTACCACCTGCAGCGTGCTTTCGGAGGCGGCGGCTGGCACGGAGGCCGGGCTACATGAGAAGCTCGAC  735

Query  150  AGGGCCTGGGATCGGGTTCCTTTCCCCAGCAGTGGGCACACTGTTCCGGTTCCCAGGAGGGGTGTCTGGCGAGG  223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  736  AGGGCCTGGGATCGGGTTCCTTTCCCCAGCAGTGGGCACACTGTTCCGGTTCCCAGGAGGGGTGTCTGGCGAGG  809

Query  224  AGTCCCACCACTCGGAGTCCAGGGCCAGACAGTGTGGCCTTGACTCGAGAGGCCTCTTGGTCCGGAGCCCTGTT  297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  810  AGTCCCACCACTCGGAGTCCAGGGCCAGACAGTGTGGCCTTGACTCGAGAGGCCTCTTGGTCCGGAGCCCTGTT  883

Query  298  TCCAAGAGTGCAGCAGCCCCTACTGTGACCTCTGTGAGAGGAACCTCGGCGCACTTTGGGATTCAGCTCAGAGG  371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  884  TCCAAGAGTGCAGCAGCCCCTACTGTGACCTCTGTGAGAGGAACCTCGGCGCACTTTGGGATTCAGCTCAGAGG  957

Query  372  TGGCACCAGATTGCCTGACAGGCTTAGCTGGCCGTGTGGCCCTGGGAGTGCTGGGTGGCAGCAAGAGTTTGCAG  445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  958  TGGCACCAGATTGCCTGACAGGCTTAGCTGGCCGTGTGGCCCTGGGAGTGCTGGGTGGCAGCAAGAGTTTGCAG  1031

Query  446  CCATGGATAGTTCTGAGACCCTGGACGCCAGCTGGGAGGCAGCCTGCAGCGATGGAGCAAGGCGTGTCCGGGCA  519
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032  CCATGGATAGTTCTGAGACCCTGGACGCCAGCTGGGAGGCAGCCTGCAGCGATGGAGCAAGGCGTGTCCGGGCA  1105

Query  520  GCAGGCTCTCTGCCATCAGCAGAGTTGAGTAGCAACAGCTGCAGCCCTGGCTGTGGCCCTGAGGTCCCCCCAAC  593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106  GCAGGCTCTCTGCCATCAGCAGAGTTGAGTAGCAACAGCTGCAGCCCTGGCTGTGGCCCTGAGGTCCCCCCAAC  1179

Query  594  CCCTCCTGGCTCTCACAGTGCCTTTACCTCAAGCTTTAGCTTTATTCGGCTCTCGCTTGGCTCTGCCGGGGAAC  667
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180  CCCTCCTGGCTCTCACAGTGCCTTTACCTCAAGCTTTAGCTTTATTCGGCTCTCGCTTGGCTCTGCCGGGGAAC  1253

Query  668  GTGGAGAAGCAGAAGGCTGCCCACCATCCAGAGAGGCTGAGTCCCATTGCCAGAGCCCCCAGGAGATGGGAGCC  741
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254  GTGGAGAAGCAGAAGGCTGCCCACCATCCAGAGAGGCTGAGTCCCATTGCCAGAGCCCCCAGGAGATGGGAGCC  1327

Query  742  AAAGCTGCCAGCTTGGACGGGCCTCACGAGGACCCGCGATGTCTCTCTCAGCCCTTCAGTCTCTTGGCTACACG  815
            |||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 1328  AAAGCTGCCAGCTTGGACGGGCCTCACGAGGACCCGCGATGTCTCTCTCGGCCCTTCAGTCTCTTGGCTACACG  1401

Query  816  GGTCTCTGCAGACTTGGCCCAGGCCGCAAGGAACAGCTCCAGGCCAGAGCGTGACATGCATTCTTTACCAGACA  889
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402  GGTCTCTGCAGACTTGGCCCAGGCCGCAAGGAACAGCTCCAGGCCAGAGCGTGACATGCATTCTTTACCAGACA  1475

Query  890  TGGACCCTGGCTCCTCCAGTTCTCTGGATCCCTCACTGGCTGGCTGTGGTGGTGATGGGAGCAGCGGCTCAGGG  963
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476  TGGACCCTGGCTCCTCCAGTTCTCTGGATCCCTCACTGGCTGGCTGTGGTGGTGATGGGAGCAGCGGCTCAGGG  1549

Query  964  GATGCCCACTCTTGGGACACCCTGCTCAGGAAATGGGAGCCAGTGCTGCGGGACTGCCTGCTGAGAAACCGGAG  1037
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550  GATGCCCACTCTTGGGACACCCTGCTCAGGAAATGGGAGCCAGTGCTGCGGGACTGCCTGCTGAGAAACCGGAG  1623

Query 1038  GCAGATGGAGGTAATATCCTTAAGATTAAAACTTCAGAAACTTCAGGAAGATGCAGTTGAGAATGATGATTATG  1111
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624  GCAGATGGAGGTAATATCCTTAAGATTAAAACTTCAGAAACTTCAGGAAGATGCAGTTGAGAATGATGATTATG  1697

Query 1112  ATAAAGCTGAGACGTTACAACAAAGATTAGAAGACCTGGAACAAGAGAAAATCAGCCTGCACTTTCAACTTCCT  1185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698  ATAAAGCTGAGACGTTACAACAAAGATTAGAAGACCTGGAACAAGAGAAAATCAGCCTGCACTTTCAACTTCCT  1771

Query 1186  TCAAGGCAGCCAGCTCTTAGCAGTTTCCTGGGTCACCTGGCAGCACAAGTCCAGGCTGCCTTGCGCCGTGGGGC  1259
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1772  TCAAGGCAGCCAGCTCTTAGCAGTTTCCTGGGTCACCTGGCAGCACAAGTCCAGGCTGCCTTGCGCCGTGGGGC  1845

Query 1260  CACTCAGCAGGCCAGCGGAGATGACACCCACACCCCACTGAGAATGGAGCCGAGGCTGTTGGAACCCACTGCTC  1333
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1846  CACTCAGCAGGCCAGCGGAGATGACACCCACACCCCACTGAGAATGGAGCCGAGGCTGTTGGAACCCACTGCTC  1919

Query 1334  AGGACAGCTTGCACGTGTCCATCACGAGACGAGACTGGCTTCTTCAGGAAAAGCAGCAGCTACAGAAAGAAATC  1407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920  AGGACAGCTTGCACGTGTCCATCACGAGACGAGACTGGCTTCTTCAGGAAAAGCAGCAGCTACAGAAAGAAATC  1993

Query 1408  GAAGCTCTCCAAGCAAGGATGTTTGTGCTGGAAGCCAAAGATCAACAGCTGAGAAGGGAAATAGAGGAGCAAGA  1481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1994  GAAGCTCTCCAAGCAAGGATGTTTGTGCTGGAAGCCAAAGATCAACAGCTGAGAAGGGAAATAGAGGAGCAAGA  2067

Query 1482  GCAGCAACTCCAGTGGCAGGGCTGCGACCTGACCCCACTGGTGGGCCAGCTGTCCCTGGGTCAGCTGCAGGAGG  1555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2068  GCAGCAACTCCAGTGGCAGGGCTGCGACCTGACCCCACTGGTGGGCCAGCTGTCCCTGGGTCAGCTGCAGGAGG  2141

Query 1556  TCAGCAAGGCCTTGCAGGACACCCTGGCCTCAGCCGGTCAGATTCCCTTCCATGCAGAGCCACCGGAAACCATA  1629
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2142  TCAGCAAGGCCTTGCAGGACACCCTGGCCTCAGCCGGTCAGATTCCCTTCCATGCAGAGCCACCGGAAACCATA  2215

Query 1630  AGGAGCCTCCAGGAAAGAATAAAATCCCTCAACTTGTCACTTAAAGAAATCACTACTAAGGTGTGTATGAGTGA  1703
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2216  AGGAGCCTCCAGGAAAGAATAAAATCCCTCAACTTGTCACTTAAAGAAATCACTACTAAGGTGTGTATGAGTGA  2289

Query 1704  GAAATTCTGCAGCACCCTGAGGAAGAAAGTTAACGATATTGAAACCCAACTACCAGCCTTGCTTGAAGCCAAAA  1777
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2290  GAAATTCTGCAGCACCCTGAGGAAGAAAGTTAACGATATTGAAACCCAACTACCAGCCTTGCTTGAAGCCAAAA  2363

Query 1778  TGCATGCCATATCAGGAAACCATTTCTGGACGGCTAAAGACCTCACCGAGGAGATTAGATCATTAACATCAGAG  1851
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2364  TGCATGCCATATCAGGAAACCATTTCTGGACGGCTAAAGACCTCACCGAGGAGATTAGATCATTAACATCAGAG  2437

Query 1852  AGAGAAGGGCTGGAGGGACTCCTCAGCAAGCTGTTGGTGTTGAGTTCCAGGAATGTCAAAAAGCTGGGAAGTGT  1925
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2438  AGAGAAGGGCTGGAGGGACTCCTCAGCAAGCTGTTGGTGTTGAGTTCCAGGAATGTCAAAAAGCTGGGAAGTGT  2511

Query 1926  TAAAGAAGATTACAACAGACTGAGAAGAGAAGTGGAGCACCAGGAGACTGCCTATG---------AAACAAGTG  1990
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ..||||.||
Sbjct 2512  TAAAGAAGATTACAACAGACTGAGAAGAGAAGTGGAGCACCAGGAGACTGCCTATGGTAGGTAGTGCACAACTG  2585

Query 1991  T-----GAAGGAAAATACT-ATGAAGTACATGGAAACACTT----------------AAGAAT-----------  2031
            |     |  |.||.|||.| ||||  ||..||       ||                .|||||           
Sbjct 2586  TTCCCCG--GCAAGATATTGATGA--TATTTG-------TTGTGTTTTGTGGCCAGGCAGAATGTTCTGTGCCT  2648

Query 2032  ------AA----ACTGTGCAGCTGCAAGTGTC------CAC----------TGCTT-GGGAAAGTGTGGGAAGC  2078
                  ||    ||||||.||     ||.|||      |||          |.||| ||||.|.|.|.||.||.
Sbjct 2649  TATGTGAACGTCACTGTGAAG-----AGCGTCATGGAGCACATGGCCCTTTTCCTTGGGGACATTTTTGGCAGG  2717

Query 2079  TGACTTGGAA--------------GCTTGTC-------GATTGCTTATCCAGAGCCTACAGCT-----------  2120
            ||.|||||.|              .||||||       |.||.|.|||.||.|....|||.||           
Sbjct 2718  TGCCTTGGCAAACCGAATGGAATTACTTGTCAGCTTTTGTTTTCATATTCACATGTGACATCTTTTCTTTTTCT  2791

Query 2121  ----CCAG---GAAGCCAGGGGAAGCCTGTCTGTAGAAGATGAGAGGCAGATGG--ATGACTTAGAG-------  2178
                ||.|   .||           |||||.|.|    |.|.|.||.|   |.|  ||.|.||||||       
Sbjct 2792  GTTCCCTGTCTCAA-----------CCTGTGTTT----GCTAATAGCC---TTGTTATTATTTAGAGCAGTCTC  2847

Query 2179  ----------------GGAGC------------------TGCTCCTCCTATTCCCCCCAGGCTCC-ACTCCGAG  2217
                            .||||                  |..||.||||.||..|||..|||||| .||||..|
Sbjct 2848  TCCCTTGGCAAGGTCTTGAGCATTTTCTTTGTGTGACAATTATCTTCCTTTTGTCCCTTGGCTCCGTCTCCTTG  2921

Query 2218  ---------------------------------GATAAAA-----GGAAGACCCCTTTGAAG-GAATCTTACAT  2252
                                             ||.||||     ||||||||   .|.||| |..||||..||
Sbjct 2922  TCTGCACAATCATAGACTAAATCAGGCTGATCTGAGAAAATTGAGGGAAGACC---ATAAAGTGGCTCTTCTAT  2992

Query 2253  -------CCTTTCTGCAGAACT--------------------TGGAGAAAAGTGTGAA----GACATAGGCAAG  2295
                   |.|||||| |||.||                    ||.||||.| ||||||    |.|.|||.||| 
Sbjct 2993  GTGTGGACTTTTCTG-AGAGCTTCTTTCCCCAGGAAGGATGATGTAGAAGA-TGTGAATGCCGCCTTAGCCAA-  3063

Query 2296  AAGCTATTG--TACTTG-----GAAGATCAA-------------CTTCACACAGCAATCC----ACAGTCATGA  2345
                 |.||  |.||||     |.||.||||             |||          |||    .|||||.|.|
Sbjct 3064  -----AGTGTCTGCTTGTCAGAGGAGTTCAAGTGTTCCTGTGTTCTT----------TCCTTTTCCAGTCGTTA  3122

Query 2346  TGAAGATCTCA--TTCAGTCTCTCAG-----------GAGGGAGCTCCAGATGGTGAAGGAAACTCTGCAGGCC  2406
            .||..|.||.|  ||   .||||.||           ||||        ||||||        |||.|.||.| 
Sbjct 3123  GGAGTAACTGAGCTT---ACTCTGAGATTTGCACCCAGAGG--------GATGGT--------CTCAGAAGAC-  3176

Query 2407  ATGATCCTGCAGCTCCAGCCAGCAAA-GGAGGCGGGAGAAAGAGAAGCTGCAGCTTCCTGCATGACAGCTGGTG  2479
                    ||.|.|.|||  .||||| .|||..||.|.|||            |||..|.|.|.|.|..|||| 
Sbjct 3177  --------GCTGGTTCAG--TGCAAATTGAGATGGTAAAAA------------CTTATTTCTTAAAAAATGGT-  3227

Query 2480  TCCACGAAGCACAAGCC----------------------------------------------------  2496
            ||  |.||..|.|.|.|                                                    
Sbjct 3228  TC--CTAAATAAATGTCATTTACTAAAACAAATGAAAGAAATATATATATGAATAAATGGCTATATTTT  3294