Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08070
- Subject:
- NR_028399.1
- Aligned Length:
- 3550
- Identities:
- 1436
- Gaps:
- 1994
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACGTGAGAGGAGACTTCCGGCCACTGCGTTGTAGTCGGCCCGGCTGCAAAGCGTTTTTCTGCAGGCTGTTTTCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAGGTTCCCTCGGCCTGTACCTCGCGCACTCCTCTTGCTCCAGGTCCTTCAGTCTCCGCTCGTCTCACCGTAGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGTGACGACATGAGCAACAAAGAAGGATCAGGAGGGTTCAGGAAAAGGAAGCATGACAATTTCCCACATAACC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAAGAAGAGAAGGGAAGGATGTTAATTCATCTTCACCCGTGATGTTGGCCTTTAAATCATTTCAGCAGGAACTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GATGCAAGGCATGACAAATATGAGAGACTTGTGAAACTTAGTCGGGATATAACTGTTGAAAGTAAAAGGACAAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTTTCTCCTCCATAGGATTACAAGTGCTCCTGATATGGAAGATATATTGACTGAATCAGAAATTAAATTGGATG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTGTCAGACAAAAGATATTCCAGGTAGCCCAAGAGCTATCAGGGGAAGATATGCATCAGTTCCATCGAGCCATT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ACTACAGGACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTAGTAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGATGAAATTAATAAACAATTGATATTTACGACTGAAGACAATGGGAAAGAAAATAAAACTAAGTTTACAGGCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGATCCTACTCACAGAGGCTCTTGGGATCAAGGCTGACAGAAGCTCCATCTGAAGACTTTTATACTATAGAGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGAAAAAGAGTGATGAATCAAGCACTGGCTTCTAAAGCTTCCGCCCAGATGGGAAGCATATCTCCTCTGCTCAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATTTCCCTGACCAAAGCCAGTCACATGGCCATCCTCAGCTTCAGAGAGGTTGGGAAGGCATTCCCACTATGTGT 888
Query 1 ----ATGCCAG----------------GC----GGGGGTCCTCAGGGCGCCC-----CAGCCGCCGCCGGCGGC 45
||||||| || ..|.|.||||| || ||||..|.||..|.|..
Sbjct 889 CTGGATGCCAGCAACTCAGAAATATTTGCCTTACAGAGACCTCA------CCATTAACAGCATCTGCAAGAGAA 956
Query 46 G------GC--------------------------GGCGTGAGCCAC-----CGCG--------CAGGCAGCCG 74
| || ..|.||||..|| ||.| .|||||||||
Sbjct 957 GATTAAAGCACACGATTACTTTACTCACTGTGTAACACATGAGGAACATGGACGAGATGGGAAAAAGGCAGCCG 1030
Query 75 GGATTGCTTACCACCTGCAGCGTGCTTTCGGAGGCGGCGGCTGGCACGGAGGCCGGGCTACATGAGAAGCTCGA 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 GGATTGCTTACCACCTGCAGCGTGCTTTCGGAGGCGGCGGCTGGCACGGAGGCCGGGCTACATGAGAAGCTCGA 1104
Query 149 CAGGGCCTGGGATCGGGTTCCTTTCCCCAGCAGTGGGCACACTGTTCCGGTTCCCAGGAGGGGTGTCTGGCGAG 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 CAGGGCCTGGGATCGGGTTCCTTTCCCCAGCAGTGGGCACACTGTTCCGGTTCCCAGGAGGGGTGTCTGGCGAG 1178
Query 223 GAGTCCCACCACTCGGAGTCCAGGGCCAGACAGTGTGGCCTTGACTCGAGAGGCCTCTTGGTCCGGAGCCCTGT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 GAGTCCCACCACTCGGAGTCCAGGGCCAGACAGTGTGGCCTTGACTCGAGAGGCCTCTTGGTCCGGAGCCCTGT 1252
Query 297 TTCCAAGAGTGCAGCAGCCCCTACTGTGACCTCTGTGAGAGGAACCTCGGCGCACTTTGGGATTCAGCTCAGAG 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 TTCCAAGAGTGCAGCAGCCCCTACTGTGACCTCTGTGAGAGGAACCTCGGCGCACTTTGGGATTCAGCTCAGAG 1326
Query 371 GTGGCACCAGATTGCCTGACAGGCTTAGCTGGCCGTGTGGCCCTGGGAGTGCTGGGTGGCAGCAAGAGTTTGCA 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 GTGGCACCAGATTGCCTGACAGGCTTAGCTGGCCGTGTGGCCCTGGGAGTGCTGGGTGGCAGCAAGAGTTTGCA 1400
Query 445 GCCATGGATAGTTCTGAGACCCTGGACGCCAGCTGGGAGGCAGCCTGCAGCGATGGAGCAAGGCGTGTCCGGGC 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 GCCATGGATAGTTCTGAGACCCTGGACGCCAGCTGGGAGGCAGCCTGCAGCGATGGAGCAAGGCGTGTCCGGGC 1474
Query 519 AGCAGGCTCTCTGCCATCAGCAGAGTTGAGTAGCAACAGCTGCAGCCCTGGCTGTGGCCCTGAGGTCCCCCCAA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 AGCAGGCTCTCTGCCATCAGCAGAGTTGAGTAGCAACAGCTGCAGCCCTGGCTGTGGCCCTGAGGTCCCCCCAA 1548
Query 593 CCCCTCCTGGCTCTCACAGTGCCTTTACCTCAAGCTTTAGCTTTATTCGGCTCTCGCTTGGCTCTGCCGGGGAA 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 CCCCTCCTGGCTCTCACAGTGCCTTTACCTCAAGCTTTAGCTTTATTCGGCTCTCGCTTGGCTCTGCCGGGGAA 1622
Query 667 CGTGGAGAAGCAGAAGGCTGCCCACCATCCAGAGAGGCTGAGTCCCATTGCCAGAGCCCCCAGGAGATGGGAGC 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 CGTGGAGAAGCAGAAGGCTGCCCACCATCCAGAGAGGCTGAGTCCCATTGCCAGAGCCCCCAGGAGATGGGAGC 1696
Query 741 CAAAGCTGCCAGCTTGGACGGGCCTCACGAGGACCCGCGATGTCTCTCTCAGCCCTTCAGTCTCTTGGCTACAC 814
||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 1697 CAAAGCTGCCAGCTTGGACGGGCCTCACGAGGACCCGCGATGTCTCTCTCGGCCCTTCAGTCTCTTGGCTACAC 1770
Query 815 GGGTCTCTGCAGACTTGGCCCAGGCCGCAAGGAACAGCTCCAGGCCAGAGCGTGACATGCATTCTTTACCAGAC 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 GGGTCTCTGCAGACTTGGCCCAGGCCGCAAGGAACAGCTCCAGGCCAGAGCGTGACATGCATTCTTTACCAGAC 1844
Query 889 ATGGACCCTGGCTCCTCCAGTTCTCTGGATCCCTCACTGGCTGGCTGTGGTGGTGATGGGAGCAGCGGCTCAGG 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 ATGGACCCTGGCTCCTCCAGTTCTCTGGATCCCTCACTGGCTGGCTGTGGTGGTGATGGGAGCAGCGGCTCAGG 1918
Query 963 GGATGCCCACTCTTGGGACACCCTGCTCAGGAAATGGGAGCCAGTGCTGCGGGACTGCCTGCTGAGAAACCGGA 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 GGATGCCCACTCTTGGGACACCCTGCTCAGGAAATGGGAGCCAGTGCTGCGGGACTGCCTGCTGAGAAACCGGA 1992
Query 1037 GGCAGATGGAGGTAATATCCTTAAGATTAAAACTTCAGAAACTTCAGGAAGATGCAGTTGAGAATGATGATTAT 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1993 GGCAGATGGAGGTAATATCCTTAAGATTAAAACTTCAGAAACTTCAGGAAGATGCAGTTGAGAATGATGATTAT 2066
Query 1111 GATAAAGCTGAGACGTTACAA------CAAAGATTAGAAGACCTGGAACAAGAGAAAATCAGCCTGCACTTTCA 1178
|||||||.||| |||..|| .|..|||| |...|| |||.|.|| |..||
Sbjct 2067 GATAAAGGTGA---GTTTTAATTTGTTTATTGATT----GTTTTG-------------TCATCATG---TCCCA 2117
Query 1179 ACTTCCTTCAAGGCAGCCAGCTCTTAGCAGTTTCCTGGGTCACCTGGCAGCACAAGTCCAGGCTGCCTTGCGCC 1252
|.||.||| .|||.| |||.|| ||.| .||.||||
Sbjct 2118 ATTTTCTT-------TCCATC---------TTTACT--------------CATA-------TCTACCTT----- 2149
Query 1253 GTGGGGCCACTCAGCAGGCCAGCGGAGATGACACCCACACCCCACTGAGAATGGAGCCGAGGCTGTTGGAACCC 1326
.|||..||||.| |||||.|..| |..||||| ||
Sbjct 2150 ---------------------------TTGAATCCCAAA--------AGAATTGTAC--AATCTGTT-----CC 2181
Query 1327 ACTGCTCAGGACAGCTTGCACGTGTCCATCACGAGACGA------GACTGGCTTCTTCAGGA------------ 1382
.|||.||| |.||.|.||.| || |||| |||.|.|||.|
Sbjct 2182 TCTGATCA--------------TCTCTACCAGG----GAATAGTTGACT--CTTTTACAGCATTATTGTTTTGT 2235
Query 1383 -------AAAGCAGCAGCTACA-GAA-----------------AGAAATCGAAGCTCTCCAAGCAAGGATGTTT 1431
||||.| ||.|| ||| |.||||..||.||...||| ||
Sbjct 2236 AGATTTCAAAGTA----CTTCATGAACATTAATCCTTTGGGTTATAAATATAACCTTATCAA----------TT 2295
Query 1432 GTGCTGGAAGCCAAAGATCAACAGCTGAGAAGGGA-------AATAGAGGAGCAAGAGCAGCAACTCCAGTGGC 1498
|| |||.| |||| ||.||.| .| ||||.| ||.|..|.|.||
Sbjct 2296 GT--------CCAGA----AACA-CTTAGCA--TACTCACACAATAAA--------------AATTATATTAGC 2340
Query 1499 AGGGCTGCGACCTGAC--CCCACTGGTGGGCCAGCTGTCCCTGGGTCAGCTGCAGGAGGTCAGCAAGGCCTTGC 1570
.|||.|||||.| |||| |||||.|
Sbjct 2341 ----TTGCCACCTGTCTGCCCA-TGGTGTG-------------------------------------------- 2365
Query 1571 AGGACACCCTGGCCTCAGCCGGTCAGATTCCCTTCCATGCAGAGCCACCGGAAACCATAAGGAGCCTCCAGGAA 1644
|||.| ||
Sbjct 2366 ------------------------------------ATGTA-------------------------TC------ 2372
Query 1645 AGAATAAAATCCCTCAACTTG-TCACTTAAAGAAAT----------CACTACTAAGGTGTG--------TATGA 1699
||.||||| ||||| ||| |||| |||| ||| |||.|.|.|| |||
Sbjct 2373 ----TATAATCC----ACTTGTTCA--TAAA-AAATATTCGTCTGACAC--CTATGATATGCTAGGGAATAT-- 2431
Query 1700 GTGAGA-AATTCTGCAGCACCCTGAGGAAGAAAGTTA-AC-GATATTGAAACCCAACTACCAGCCTTGCTTGAA 1770
|.|||| ||| |.||||||.| || ||.||.| ||.|.||| ||||
Sbjct 2432 GGGAGACAAT-----------------AGGAAAGTAAGACAGACATGG---------TATCTGCC---CTTG-- 2474
Query 1771 GCCAAAATGCATGCCATATCAGGAAAC-----CATTTCTGGACGGCTAAAGACCTCACCGAGGAGATTAGATCA 1839
|| |||| |||.|||| |.||..||| |||| ||| .||.|..||.|
Sbjct 2475 -------TG-ATGC-----CAGTAAACTTAAGCCTTCATGG--GGCT------CTC-------TGACTTCATAA 2520
Query 1840 TT-----AACATCAGAGAGAGAAGGGCTGGAGGGACTCCTCAGCAAGCTGTTGGTGTTGAGTTCCAGGAATGTC 1908
|| ||| ||||||.|| |.|| ||||.| ||||
Sbjct 2521 TTTCCAGAAC--CAGAGATAG---------------------GAAA-----------TGAGGT----GAAT--- 2553
Query 1909 AAAAAGCTGGGAAGTGTTAAAGAAGATTACAACAGACTGAG--AAGAGAAGTGGAGCACCAGGAGACTGCCTAT 1980
.||.|||.||| |||||||.| | |||.||..||| ||
Sbjct 2554 ------TTGAGAAATGT---------------CAGACTGTGCCA----AAGGGGGTCAC-------------AT 2589
Query 1981 GAAACAAGTGTGAAGGAAAATACTATGAAGTACATGGAAACACTTAAGAATAAACTGTGCAGCTGCAAGTGTCC 2054
|.|.|||.|.| ..|.|||| ||
Sbjct 2590 GCATCAAATTT----CCACATAC-AT------------------------------------------------ 2610
Query 2055 ACTGCTTGGGAAAGTGTGGGAAGCTGACTTGGAAGCTTGTCGATTGCTTATCCAGAGCCTACAGCTCCAGGAAG 2128
Sbjct 2611 -------------------------------------------------------------------------- 2610
Query 2129 CCAGGGGAAGCCTGTCTGTAGAAGATGAGAGGCAGATGGATGACTTAGAGGGAGCTGCTCCTCCTATTCCCCCC 2202
Sbjct 2611 -------------------------------------------------------------------------- 2610
Query 2203 AGGCTCCACTCCGAGGATAAAAGGAAGACCCCTTTGAAGGAATCTTACATCCTTTCTGCAGAACTTGGAGAAAA 2276
Sbjct 2611 -------------------------------------------------------------------------- 2610
Query 2277 GTGTGAAGACATAGGCAAGAAGCTATTGTACTTGGAAGATCAACTTCACACAGCAATCCACAGTCATGATGAAG 2350
Sbjct 2611 -------------------------------------------------------------------------- 2610
Query 2351 ATCTCATTCAGTCTCTCAGGAGGGAGCTCCAGATGGTGAAGGAAACTCTGCAGGCCATGATCCTGCAGCTCCAG 2424
Sbjct 2611 -------------------------------------------------------------------------- 2610
Query 2425 CCAGCAAAGGAGGCGGGAGAAAGAGAAGCTGCAGCTTCCTGCATGACAGCTGGTGTCCACGAAGCACAAGCC 2496
Sbjct 2611 ------------------------------------------------------------------------ 2610
