Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_08124
• Subject: NM_001079904.1
• Aligned Length: 1870
• Identities: 1385
• Gaps: 239

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGATGGGCGCTGCGTCCCTGGAGGGCACGCGGGAGAGTTTTCTCTGTCATCCGGGGGCTACCGAAGTGTGGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCGAAGCAGCCGAAGTCTCCCCAGGAACATCCCCAGAAGGAGCTGGAAAAAGCCTCACCCCCAGCTCTTCAGTC  148

Query    1  -----------------ATGCTGGAACGTCGTTGCAGGGGCCCCCTGGCCATGGGCCTGGCCCAGCCCCGACTC  57
                             ||||||||||..||.||||||||||||..|||||||||||..||.||||||.|.|||
Sbjct  149  TTCAGGAGGAAGAACCGATGCTGGAACAGCGCTGCAGGGGCCCCACGGCCATGGGCCCAGCTCAGCCCTGGCTC  222

Query   58  CTTTCTGGGCCCTCCCAGGAGTCACCCCAGACCCTGGGGAAGGAGTCCCGCGGGCTGAGGCAACAAGGCACGTC  131
            .||||||||||||||||||||||..|||||.||     ||       |.|.|||.|||||.|.||.||||..||
Sbjct  223  TTTTCTGGGCCCTCCCAGGAGTCCTCCCAGCCC-----GA-------CAGAGGGTTGAGGTACCAGGGCAAATC  284

Query  132  AGTGGCCCAGTCTGGTGCCCAAGCCCCAGGCAGGGCCCATCGCTGTGCCCACTGTCGAAGGCACTTCCCTGGCT  205
            |   ||.|||.|..|.|.||||.|||||||||.||.||||||.||||||||||||||.|.||.||||||.||||
Sbjct  285  A---GCTCAGCCAAGAGGCCAAACCCCAGGCAAGGTCCATCGTTGTGCCCACTGTCGGAAGCGCTTCCCGGGCT  355

Query  206  GGGTGGCTCTGTGGCTTCACACCCGCCGGTGCCAGGCCCGGCTGCCCTTGCCCTGCTCTGAGTGTGGCCGTCGC  279
            |||||||.|||||||||||..|.||.||||||||||||||||||||..||||||||..|||.||...||..|||
Sbjct  356  GGGTGGCCCTGTGGCTTCATGCTCGGCGGTGCCAGGCCCGGCTGCCTCTGCCCTGCCATGAATGCAACCAGCGC  429

Query  280  TTTCGCCATGCCCCCTTCTTAGCACTGCACCGCCAGGTCCATGCTGCTGCCACCCCAGACCTGGGCTTTGCCTG  353
            ||||||||.||||||||||||||.|||||.|..|||||.||||||.||||...|||.||||||||.||...|||
Sbjct  430  TTTCGCCACGCCCCCTTCTTAGCGCTGCATCTTCAGGTTCATGCTTCTGCAGTCCCCGACCTGGGTTTCATCTG  503

Query  354  CCACCTCTGTGGGCAGAGCTTCCGAGGCTGGGTGGCCCTGGTTCTGCATCTGCGGGCCCATTCAGCTGCAAAGC  427
            ||||||.||||||||.|||||||||||.|||||.|||||||||||||||||||||||.||.||||||.||||||
Sbjct  504  CCACCTATGTGGGCATAGCTTCCGAGGATGGGTAGCCCTGGTTCTGCATCTGCGGGCTCACTCAGCTTCAAAGC  577

Query  428  GGCCCATCGCTTGTCCCAAATGCGAGAGACGCTTCTGGCGACGAAAGCAGCTTCGAGCTCATCTGCGGCGGTGC  501
            ||||||||.||||.||..|||||||.||||||||||||||||.|||.||||||||||||||||||||..|||||
Sbjct  578  GGCCCATCACTTGCCCTGAATGCGACAGACGCTTCTGGCGACAAAAACAGCTTCGAGCTCATCTGCGAAGGTGC  651

Query  502  CACCCTCCCGCCCCGGAGGCCCGGCCCTTCATATGCGGCAACTGTGGCCGGAGCTTTGCCCAGTGGGACCAGCT  575
            ||.||.||.|.|||.|||||||||||||||||||||||||||||||||||||||||||||||.||||||||.||
Sbjct  652  CAGCCCCCTGTCCCTGAGGCCCGGCCCTTCATATGCGGCAACTGTGGCCGGAGCTTTGCCCAATGGGACCAACT  725

Query  576  AGTTGCCCACAAGCGGGTGCACGTAGCTGAGGCCCTGGAGGAGGCCGCAGCCAAGGCTCTGGGGCCCCGGCCCA  649
            .||||..|||||||||||||||||.|||||||||.||||||||||.||||||||.||.|||||.||.| |||||
Sbjct  726  GGTTGTTCACAAGCGGGTGCACGTGGCTGAGGCCTTGGAGGAGGCAGCAGCCAAAGCCCTGGGTCCTC-GCCCA  798

Query  650  -GGGGCCGCCCCGCGGTGACCGCCCCCCGGCCCGGTGGAGATGCCGTCGACCGCCCCTTCCAGTGTGCCTGTTG  722
             |.||.||.||||      |.||.|||.||||.||||||||.||.||.|||||||||||||||||||||||.||
Sbjct  799  CGAGGACGTCCCG------CAGCTCCCAGGCCTGGTGGAGACGCTGTGGACCGCCCCTTCCAGTGTGCCTGCTG  866

Query  723  TGGCAAGCGCTTCCGGCACAAGCCCAACTTGATCGCTCACCGCCGCGTGCACACGGGCGAGCGGCCCCACCAGT  796
            .||||||||.|||||.|||||||||||..|||||||.|||||||||||||||||.||.|||||.||.|||||||
Sbjct  867  CGGCAAGCGTTTCCGCCACAAGCCCAATCTGATCGCCCACCGCCGCGTGCACACTGGTGAGCGACCACACCAGT  940

Query  797  GCCCCGAGTGCGGGAAGCGCTTTACCAATAAGCCCTATCTGACTTCGCACCGGCGCATCCACACCGGCGAGAAG  870
            ||||.||||||||||||||.||.|||||.||||||||.|||||.||||||||||||||.||.||||||||||||
Sbjct  941  GCCCAGAGTGCGGGAAGCGTTTCACCAACAAGCCCTACCTGACCTCGCACCGGCGCATACATACCGGCGAGAAG  1014

Query  871  CCCTACCCGTGCAAAGAGTGCGGCCGCCGCTTCCGGCACAAACCCAACCTGCTGTCTCACAGCAAGATTCACAA  944
            ||||||||.||||..|||||.||||||||||||||.|||||||||||||||.||||.||||||||.||.|||||
Sbjct 1015  CCCTACCCATGCACCGAGTGTGGCCGCCGCTTCCGCCACAAACCCAACCTGTTGTCGCACAGCAAAATCCACAA  1088

Query  945  GCGATCCGAGGGGTCGGCCCAGGCCGCCCCCGGCCCGGGGAGCCCCCAGCTGCCAGCCGGCCCCCAGGAGTCCG  1018
            |||.|..||||..||.||.|||||.|||||...|||.|.|||.|.||||.|                     .|
Sbjct 1089  GCGCTTGGAGGTCTCAGCGCAGGCTGCCCCACACCCCGAGAGTCACCAGAT---------------------TG  1141

Query 1019  CGGCCGAGCCCACCCCGGCGGTACCTCTGAAACCGGCCCAGGAGCCGCCGCCAGGGG-CCCCGCCAGAGCACCC  1091
            |.||.|||||.|      .||.||      ||||.||.|..|.|..||| ||.|||| ||||||          
Sbjct 1142  CAGCAGAGCCTA------TGGCAC------AACCTGCACTTGGGGTGCC-CCTGGGGTCCCCGC----------  1192

Query 1092  GCAGGACCCGATCGAAGCCCCC--CCCTCCCTCTACAGCTGCGACGACTGCGGCAGGAGCTTCCGGCTGGAGCG  1163
               ||||||.|.|..||.|.||  |.|| |||..|.||||||..||||||||||.|.|||||||||||||||||
Sbjct 1193  ---GGACCCCAGCTGAGGCACCTGCGCT-CCTGCATAGCTGCTCCGACTGCGGCCGCAGCTTCCGGCTGGAGCG  1262

Query 1164  CTTCCTGCGGGCCCACCAGCGGCAGCACACCGGGGAGCGGCCCTTCACCTGCGCCGAGTGCGGGAAGAACTTCG  1237
            ||||||||||...||||||.||||||||||.||||||.||||||||.|||||.|.|||||.||.||||||||||
Sbjct 1263  CTTCCTGCGGCTACACCAGAGGCAGCACACAGGGGAGAGGCCCTTCGCCTGCACAGAGTGTGGCAAGAACTTCG  1336

Query 1238  GCAAGAAGACGCACCTGGTGGCGCACTCGCGCGTGCACTCCGGCGAGCGGCCCTTCGCCTGCGAGGAGTGCGGC  1311
            ||||||||||||||||||||||||||||.|||||||||||||||||.||.||||||||||||||||||||.||.
Sbjct 1337  GCAAGAAGACGCACCTGGTGGCGCACTCACGCGTGCACTCCGGCGAACGTCCCTTCGCCTGCGAGGAGTGTGGT  1410

Query 1312  CGCCGCTTCTCCCAGGGCAGCCATCTGGCGGCGCATCGGCGCGACCACGCCCCCGATCGGCCCTTCGTGTGTCC  1385
            |||||.|||||.|||||||||||.|||||.||.||.|||||.|||||.||.||.||..|||||||||||||.||
Sbjct 1411  CGCCGTTTCTCACAGGGCAGCCACCTGGCAGCCCACCGGCGAGACCATGCACCAGAGAGGCCCTTCGTGTGCCC  1484

Query 1386  CGACTGCGGCAAGGCCTTCCGCCACAAACCCTACCTGGCGGCGCACCGGCGCATCCACACCGGCGAGAAGCCCT  1459
            .||||||||||||||.|||||||||||.|||||||||||.||||||||.|||||||||||.||||||||.||||
Sbjct 1485  GGACTGCGGCAAGGCTTTCCGCCACAAGCCCTACCTGGCTGCGCACCGACGCATCCACACAGGCGAGAAACCCT  1558

Query 1460  ACGTCTGCCCCGACTGCGGCAAAGCCTTCAGCCAGAAGTCCAACCTGGTGTCGCACCGGCGCATCCACACGGGC  1533
            |.||.||.||||||||.||||||||.|||||.||||||||||||||||||||.|||||||||||||||||.|||
Sbjct 1559  ATGTGTGTCCCGACTGTGGCAAAGCTTTCAGTCAGAAGTCCAACCTGGTGTCCCACCGGCGCATCCACACAGGC  1632

Query 1534  GAGCGGCCCTACGCCTGTCCCGACTGCGACCGCAGCTTCAGCCAGAAGTCCAACCTCATCACCCACCGCAAGAG  1607
            |||||||||||||||||.||||||||.||.||.||||||||.|||||||||||.||.|||||.|||||.|||||
Sbjct 1633  GAGCGGCCCTACGCCTGCCCCGACTGTGATCGTAGCTTCAGTCAGAAGTCCAATCTTATCACACACCGGAAGAG  1706

Query 1608  CCACATCCGGGACGGCGCCTTCTGCTGTGCCATCTGTGGCCAGACCTTCGACGACGAGGAGAGACTCCTGGCCC  1681
            ||||||||||||.|||||||||||.|||||||||||||||||||||||.||.||||||||..|||||.||...|
Sbjct 1707  CCACATCCGGGATGGCGCCTTCTGTTGTGCCATCTGTGGCCAGACCTTTGATGACGAGGACCGACTCTTGATGC  1780

Query 1682  ACCAGAAGAAGCACGATGTC  1701
            |||||||||||||.||||.|
Sbjct 1781  ACCAGAAGAAGCATGATGCC  1800