Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_08191
Subject:
NR_147853.1
Aligned Length:
3496
Identities:
942
Gaps:
2551

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCGGCCGCAGCGCGCATTTGGGCTCCGAGGAAGTTGACCGAGGCGGCTGCCGCAGGATCCCGGGCCCGGATCGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACGAAGCCCGCGCGGCCGTCTCCTCCGCGCGCCACCCCTGCGCCTCCCGCGAGCTCCACTTCCCATCTGCTATT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTTTCCGATTGTTTTCCGGTGGCGAGCCCGGCTCCGAAACTTACAAAGTGTTGGATGTCCCCCGTTCGAACTGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGGACTGCAGACCGCCTCTGGGTAGCTGGATGAAGCCCACCCCGTCCCCTTCTGGTACCAAAGTGCTTACTCCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTCCAAAGTGCCGTGTCTGAACTGCCGCTGGGAAGAAGCGGCTCCTGAGACGCGCCCACACCTTTCACCTGCCG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CGCGCTTCCCCCTCCTCGGCCACCTTCCCGGCGGAAGCAGCGAGGAGGGAGCCCCCTTTGGCCGTCCTCCGTGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AACCGGTTTTCCGAGGCTGGCAAAAGCCGAGGCTGGATTTGGGGGAGGAATATTAGACTCGGAGGAGTCTGCGC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GCTTTTCTCCTCCCCGCGCCTCCCGGTCGCCGCGGGTTCACCGCTCAGTCCCCGCGCTCGCTCCGCACCCCACC  592

Query    1  ------------------------------------------------------------------------AT  2
                                                                                    ||
Sbjct  593  CACTTCCTGTGCTCGCCCGGGGGGCGTGTGCCGTGCGGCTGCCGGAGTTCGGGGAAGTTGTGGCTGTCGAGAAT  666

Query    3  GGGGGTCTGTGGGTACCTGTTCCTGCCCTGGAAGTGCCTCGTGGTCGTGTCTCTCAGGCTGCTGTTCCTTGTAC  76
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GGGGGTCTGTGGGTACCTGTTCCTGCCCTGGAAGTGCCTCGTGGTCGTGTCTCTCAGGCTGCTGTTCCTTGTAC  740

Query   77  CCACAGGAGTGCCCGTGCGCAGCGGAGATGCCACCTTCCCCAAAGCTATGGACAACGTGACGGTCCGGCAGGGG  150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CCACAGGAGTGCCCGTGCGCAGCGGAGATGCCACCTTCCCCAAAGCTATGGACAACGTGACGGTCCGGCAGGGG  814

Query  151  GAGAGCGCCACCCTCAGGTGCACTATTGACAACCGGGTCACCCGGGTGGCCTGGCTAAACCGCAGCACCATCCT  224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GAGAGCGCCACCCTCAGGTGCACTATTGACAACCGGGTCACCCGGGTGGCCTGGCTAAACCGCAGCACCATCCT  888

Query  225  CTATGCTGGGAATGACAAGTGGTGCCTGGATCCTCGCGTGGTCCTTCTGAGCAACACCCAAACGCAGTACAGCA  298
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CTATGCTGGGAATGACAAGTGGTGCCTGGATCCTCGCGTGGTCCTTCTGAGCAACACCCAAACGCAGTACAGCA  962

Query  299  TCGAGATCCAGAACGTGGATGTGTATGACGAGGGCCCTTACACCTGCTCGGTGCAGACAGACAACCACCCAAAG  372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TCGAGATCCAGAACGTGGATGTGTATGACGAGGGCCCTTACACCTGCTCGGTGCAGACAGACAACCACCCAAAG  1036

Query  373  ACCTCTAGGGTCCACCTCATTGTGCAAGTATCTCCCAAAATTGTAGAGATTTCTTCAGATATCTCCATTAATGA  446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  ACCTCTAGGGTCCACCTCATTGTGCAAGTATCTCCCAAAATTGTAGAGATTTCTTCAGATATCTCCATTAATGA  1110

Query  447  AGGGAACAATATTAGCCTCACCTGCATAGCAACTGGTAGACCAGAGCCTACGGTTACTTGGAGACACATCTCTC  520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  AGGGAACAATATTAGCCTCACCTGCATAGCAACTGGTAGACCAGAGCCTACGGTTACTTGGAGACACATCTCTC  1184

Query  521  CCAAAGCGGTTGGCTTTGTGAGTGAAGACGAATACTTGGAAATTCAGGGCATCACCCGGGAGCAGTCAGGGGAC  594
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 1185  CCAAAGCGGTTGGCTTTGTGAGTGAAGACGAATACTTGGAAATTCAGGGCATCACCAGGGAGCAGTCAGGGGAC  1258

Query  595  TACGAGTGCAGTGCCTCCAATGACGTGGCCGCGCCCGTGGTACGGAGAGTAAAGGTCACCGTGAACTATCCACC  668
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TACGAGTGCAGTGCCTCCAATGACGTGGCCGCGCCCGTGGTACGGAGAGTAAAGGTCACCGTGAACTATCCACC  1332

Query  669  ATACATTTCAGAAGCCAAGGGTACAGGTGTCCCCGTGGGACAAAAGGGGACACTGCAGTGTGAAGCCTCAGCAG  742
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  ATACATTTCAGAAGCCAAGGGTACAGGTGTCCCCGTGGGACAAAAGGGGACACTGCAGTGTGAAGCCTCAGCAG  1406

Query  743  TCCCCTCAGCAGAATTCCAGTGGTACAAGGATGACAAAA-----------------------------------  781
            |||||||||||||||||||||||||||||||||||||||                                   
Sbjct 1407  TCCCCTCAGCAGAATTCCAGTGGTACAAGGATGACAAAAGAGCTGAAATCTCATTCACAGTTTGGTTATGATGG  1480

Query  782  --------------------------------------------------------------------------  781
                                                                                      
Sbjct 1481  GAAAGCTTCCTCCCCATGGTGGACGAATGGTGTCAAAACGGCCAGTGGGATCAATCAGCCTGACTTGCTCGCAG  1554

Query  782  ---------GACTGATTGAAGGAAAGAAAGGGGTGAAAGTGGAAAACAGACCTTTCCTCTCAAAACTCATCTTC  846
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  AATCCTCCCGACTGATTGAAGGAAAGAAAGGGGTGAAAGTGGAAAACAGACCTTTCCTCTCAAAACTCATCTTC  1628

Query  847  TTCAATGTCTCTGAACATGACTATGGGAACTACACTTGCGTGGCCTCCAACAAGCTGGGCCACACCAATGCCAG  920
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TTCAATGTCTCTGAACATGACTATGGGAACTACACTTGCGTGGCCTCCAACAAGCTGGGCCACACCAATGCCAG  1702

Query  921  CATCATGCTATTTGGT---------------GAGACTGTGCTC-------------------------------  948
            ||||||||||||||||               |||   |||..|                               
Sbjct 1703  CATCATGCTATTTGGTCCAGGCGCCGTCAGCGAG---GTGAGCAACGGCACGTCGAGGAGGGCAGGCTGCGTCT  1773

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 1774  GGCTGCTGCCTCTTCTGGTCTTGCACCTGCTTCTCAAATTTTGATGTGAGTGCCACTTCCCCACCCGGGAAAGG  1847

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 1848  CTGCCGCCACCACCACCACCAACACAACAGCAATGGCAACACCGACAGCAACCAATCAGATATATACAAATGAA  1921

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 1922  ATTAGAAGAAACACAGCCTCATGGGACAGAAATTTGAGGGAGGGGAACAAAGAATACTTTGGGGGGAAAAAAGT  1995

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 1996  TTTAAAAAAGAAATTGAAAATTGCCTTGCAGATATTTAGGTACAATGGAGTTTTCTTTTCCCAAACGGGAAGAA  2069

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 2070  CACAGCACACCCGGCTTGGACCCACTGCAAGCTGCATCGTGCAACCTCTTTGGTGCCAGTGTGGGCAAGGGCTC  2143

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 2144  AGCCTCTCTGCCCACAGAGTGCCCCCACGTGGAACATTCTGGAGCTGGCCATCCCAAATTCAATCAGTCCATAG  2217

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 2218  AGACGAACAGAATGAGACCTTCCGGCCCAAGCGTGGCGCTGCGGGCACTTTGGTAGACTGTGCCACCACGGCGT  2291

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 2292  GTGTTGTGAAACGTGAAATAAAAAGAGCAAGAAAGAAAAAGGAAACAAAATAAGACCGTCTGACAGCAACAACG  2365

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 2366  GTCCCACAAACAAGTCACAAAAGATACCGTTAAACTTTTTTTTTTTTTTATCATTTTACTACATGAACATCATG  2439

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 2440  GATAACAAGGGATTCTGATTCATTATTAATTTCATTAATTATATTTTCTGATATGAGTCTAGAACTTACTGCAA  2513

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 2514  AAACAAGACAAAACTAAAAAAATACAACTGAGAAGGGTGAAGAGAAGTATGTTTGTTAAACAGTAAAAATGAAT  2587

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 2588  AGTATACTTCTTAACTAGGTTTACAACTGGTGGACCACACACCAGGCACTAATCACCTGGTGAGGATTTGGCAT  2661

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 2662  ATCCACCAAAAAATGCATCCGATTTAACCAACATCTCCACCAGCGCTACGGACTCCTCCCAATTCTGACATCTC  2735

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 2736  TTGCAGACAATACTATGCTCTCTACACACTGTTTAGAAATGGAAAGGTGATCTGCACTGTATCTTGGGTTTGTT  2809

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 2810  GGCTATGCTTCCTTTGATGACATATATTATACAGTATATATATACATATATTTTTTTTGTTAGAGTTCTAGCCA  2883

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 2884  TTTTATTTCTCCGCAGGGTCCTTTCTCAGACATTACTGCATGCTGTATATGGCGTTAGCTGTGTGTTGATCTTC  2957

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 2958  TAAAAGATGATAGAGTTTACTGGTAATTGTGTAATCAGCTCCTGCCTTTTTATTTTCTTGGGTTATTTACATGT  3031

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 3032  CAGAGACATTTATAAAAAGTGAAAGGATAAAAAAAAAAAAAAACAACTAATACCGGGCGCAGCATCTTTCCAGG  3105

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 3106  TGTGGCTCTGCGCTAGGCCACCCCAGGTGGCCCCGCTTTCTCCATTCTGCCCTGTGGCGTTAACAGACAGCAAG  3179

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 3180  CAGCTGAACAAGCAGTACCGTCAGTACCCACTTGCTTTAGCCCATTATGGGAATCTCTGATGCCTTTGTGACCA  3253

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 3254  CTGGAGAGTTTAATCCTCTTGGTTTATTTTATTTCCCACCTTTGTGTGAGTGTGTATGAAAGAGAAGAAAATGC  3327

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 3328  AATTTTTAGGTAATCTTTTTTTTTTTTCCCCTCCCCTGAAAGTCTGGGAACCTGAGAGTCCTCGGGGAGGGGTC  3401

Query  949  --------------------------------------------------------------------------  948
                                                                                      
Sbjct 3402  CTGGATGTGATGAGGGAAAGGGGGATTGGGGGATCCGGGAGGGTGGGGTTGTCTCTGACTTGACATTAAAAAGT  3475

Query  949  ------------------  948
                              
Sbjct 3476  GTTCCATGTCCCTCTTCA  3493

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.