Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08447
- Subject:
- XR_944279.3
- Aligned Length:
- 2706
- Identities:
- 1697
- Gaps:
- 879
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTAAAGGGGGCAGTGACTGCGGCTGGGCGGGAGTCCGGGTCGGCTTGGCTGAGCGGGGGCGGTGCTGGGCAGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGGCGGCCGCTCCCTCCCGGACTCCCGGCCTCCCGGCCTCCCTGGTCCCGCCTGGGAAGGGATGCAAGGAAGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTCCGGCGCTGCGCTCCGAGGCGGGAGACAGCGTCCCCCTCCGCCCCTCGGGTCCTGGCGCCTCAGAGCCCGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCAGGCCGCGGAACGGTGATGCTCGGGCCGGACGGGCGGGCGCGGATCCCTGCGTCCCGCTGAAAATGTGTGTC 296
Query 1 -----------------------------------------------------------------ATGAAGGTG 9
|||||||||
Sbjct 297 TGACATGCAAGCTCAGTGGGGCAGAGACCCGTGGATTGCTGTGCCCTGCCCTCCGGACCTGGATCATGAAGGTG 370
Query 10 TTGGGAAGAAGCTTCTTCTGGGTGCTGTTTCCCGTCCTTCCCTGGGCGGTGCAGGCTGTGGAGCACGAGGAGGT 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TTGGGAAGAAGCTTCTTCTGGGTGCTGTTTCCCGTCCTTCCCTGGGCGGTGCAGGCTGTGGAGCACGAGGAGGT 444
Query 84 GGCGCAGCGTGTGATCAAACTGCACCGCGGGCGAGGGGTGGCTGCCATGCAGAGCCGGCAGTGGGTCCGGGACA 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GGCGCAGCGTGTGATCAAACTGCACCGCGGGCGAGGGGTGGCTGCCATGCAGAGCCGGCAGTGGGTCCGGGACA 518
Query 158 GCTGCAGGAAGCTCTCAGGGCTTCTCCGCCAGAAGAATGCAGTTCTGAACAAACTGAAAACTGCAATTGGAGCA 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GCTGCAGGAAGCTCTCAGGGCTTCTCCGCCAGAAGAATGCAGTTCTGAACAAACTGAAAACTGCAATTGGAGCA 592
Query 232 GTGGAGAAAGACGTGGGCCTGTCGGATGAAGAGAAACTGTTTCAGGTGCACACGTTTGAAATTTTCCAGAAAGA 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GTGGAGAAAGACGTGGGCCTGTCGGATGAAGAGAAACTGTTTCAGGTGCACACGTTTGAAATTTTCCAGAAAGA 666
Query 306 GCTGAATGAAAGTGAAAATTCCGTTTTCCAAGCTGTCTACGGACTGCAGAGAGCCCTGCAGGGGGATTACAAAG 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GCTGAATGAAAGTGAAAATTCCGTTTTCCAAGCTGTCTACGGACTGCAGAGAGCCCTGCAGGGGGATTACAAAG 740
Query 380 ATGTCGTGAACATGAAGGAGAGCAGCCGGCAGCGCCTGGAGGCCCTGAGAGAGGCTGCAATAAAGGAAGAAACA 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ATGTCGTGAACATGAAGGAGAGCAGCCGGCAGCGCCTGGAGGCCCTGAGAGAGGCTGCAATAAAGGAAGAAACA 814
Query 454 GAATATATGGAACTTCTGGCAGCAGAAAAACATCAAGTTGAAGCCCTTAAAAATATGCAACATCAAAACCAAAG 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GAATATATGGAACTTCTGGCAGCAGAAAAACATCAAGTTGAAGCCCTTAAAAATATGCAACATCAAAACCAAAG 888
Query 528 TTTATCCATGCTTGACGAGATTCTTGAAGATGTAAGAAAGGCAGCGGATCGTCTGGAGGAAGAGATAGAGGAAC 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TTTATCCATGCTTGACGAGATTCTTGAAGATGTAAGAAAGGCAGCGGATCGTCTGGAGGAAGAGATAGAGGAAC 962
Query 602 ATGCTTTTGACGACAATAAATCAGTCAAGGGGGTCAATTTTGAGGCAGTTCTGAGGGTGGAGGAAGAAGAGGCC 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ATGCTTTTGACGACAATAAATCAGTCAAGGGGGTCAATTTTGAGGCAGTTCTGAGGGTGGAGGAAGAAGAGGCC 1036
Query 676 AATTCTAAGCAAAATATAACAAAACGAGAAGTGGAGGATGACTTGGGTCTTAGCATGCTGATTGACTCCCAGAA 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AATTCTAAGCAAAATATAACAAAACGAGAAGTGGAGGATGACTTGGGTCTTAGCATGCTGATTGACTCCCAGAA 1110
Query 750 CAACCAGTATATTTTGACCAAGCCCAGAGATTCAACCATCCCACGTGCAGATCACCACTTTATAAAGGACATTG 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CAACCAGTATATTTTGACCAAGCCCAGAGATTCAACCATCCCACGTGCAGATCACCACTTTATAAAGGACATTG 1184
Query 824 TTACCATAGGAATGCTGTCCTTGCCTTGTGGCTGGCTATGTACAGCCATAGGATTGCCTACAATGTTTGGTTAT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TTACCATAGGAATGCTGTCCTTGCCTTGTGGCTGGCTATGTACAGCCATAGGATTGCCTACAATGTTTGGTTAT 1258
Query 898 ATTATTTGTGGTGTACTTCTGGGACCTTCAGGACTAAATAGTATTAAGTCTATTGTGCAAGTGGAGACATTAGG 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ATTATTTGTGGTGTACTTCTGGGACCTTCAGGACTAAATAGTATTAAGTCTATTGTGCAAGTGGAGACATTAGG 1332
Query 972 AGAATTTGGGGTGTTTTTTACTCTTTTTCTTGTTGGCTTAGAATTTTCTCCAGAAAAGCTAAGAAAGGTGTGGA 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AGAATTTGGGGTGTTTTTTACTCTTTTTCTTGTTGGCTTAGAATTTTCTCCAGAAAAGCTAAGAAAGGTGTGGA 1406
Query 1046 AGATTTCCTTACAAGGGCCGTGTTACATGACACTGTTAATGATTGCATTTGGCTTGCTGTGGGGGCATCTCTTG 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 AGATTTCCTTACAAGGGCCGTGTTACATGACACTGTTAATGATTGCATTTGGCTTGCTGTGGGGGCATCTCTTG 1480
Query 1120 CGGATCAAACCCACGCAGAGCGTCTTCATTTCCACGTGTCTGTCCTTGTCAAGCACACCCCTCGTGTCCAGGTT 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CGGATCAAACCCACGCAGAGCGTCTTCATTTCCACGTGTCTGTCCTTGTCAAGCACACCCCTCGTGTCCAGGTT 1554
Query 1194 CCTCATGGGCAGTGCTCGGGGTGACAAAGAAGGCGACATTGACTACAGCACCGTGCT-----CCTCGGCATGC- 1261
|||||||||||||||||||||||||||||||| ||| ||..||| |||.||.| ||..|||.|.|
Sbjct 1555 CCTCATGGGCAGTGCTCGGGGTGACAAAGAAG--GAC-TTTCCTA----ACCATGGTGGATACCAGGGCTTACA 1621
Query 1262 -------------TGGTGACGCAGGACGTG----CAGCTCGGGCT-----------CTTC-------------- 1293
|||||.|.| .||| |||||| || ||||
Sbjct 1622 TTCTGCAAGGAAATGGTGTCCC----TGTGAACTCAGCTC---CTCCAAACCTCCACTTCTCCACTTGATTAAG 1688
Query 1294 ----ATGGCCGTCATGCGGACTCTCATACAGGCGGGCGCCAG--------TGCATC----TTCT---------- 1341
|||.||| ||.||| .|.||..||| ||||| ||.|.| ||.|
Sbjct 1689 AAAAATGCCCG---TGAGGA--TTGATTGAGG-----GCCAGAGAGAAATTGGACCAAGATTTTGAAAAACCAG 1752
Query 1342 --AGCATTGTCGTGGAAGTTCTCCGAAT--CCTGGTTTTG--ATTGGTCAGATTCTTTTTTCACTAGCGGCGGT 1409
|||| .||||| ||| |||| || |.|||| .||| |||....|.|.|||...||
Sbjct 1753 TCAGCA-----CTGGAA--------AATGACCTG----TGGAACTGGT-GGAT--TTTAGGAAGTTGCGTATGT 1806
Query 1410 TTTTCT--TTTATGTCTTG--------------TTATAAAGAAGTATCTCATTGGACCCTATTATCGGAAGCTG 1467
|||.|| ||||..|||.| |.||| |.|.||.||..||.|..|| |||
Sbjct 1807 TTTGCTGCTTTAATTCTAGCAGGCACTGGGAATTGATA---------CACTTTTGATACTTTCTTC-----CTG 1866
Query 1468 CACATGGAAAGCAAG-------GGGAAC--AAAGAAATCCTGA-TCTTGGGAATATCT---GCCTT-------- 1520
.||||.|||| ||.||| ||.|...|||.|| ||||.|| || |||||
Sbjct 1867 -----TGAAATCAAGGTGCTTTGGTAACTGAAGGTGTTCCCGACTCTTTGG-----CTTTGGCCTTAGTTTCAT 1930
Query 1521 --TAT----------------CTTCTTAATGTTAACGGT------------------CACGGAGC---TGCTGG 1555
||| |||||.|.|..|.||.|| |.|||||| .||.||
Sbjct 1931 CGTATGTATGAAACATTGCCGCTTCTAAGTCGTGACTGTTTAGTGGAAGCCGACTTGCTCGGAGCCTAGGCAGG 2004
Query 1556 A-CGTCTCCAT------GGAGCTGGGCTGTTTCCTGGCTGG-AGCGCTCGTCTC-CTCTCAGG--GCC------ 1612
| |||.|||.| ||| ||.|.| ||| ||| ||.||| ||| || |||
Sbjct 2005 ACCGTGTCCCTCTGCGGGGA---GGACAG---------TGGAAGC---CGACTCACTC---GGAAGCCTAGGCA 2060
Query 1613 ---CCGTGGTCAC----CGAGGAGATCGCCACCTCCATCGAACCCATCCGCGACTTCCT-GGCCATCGTTTTCT 1678
|||| |||.| ||.|||| |.|| .|.|||.| ||||||.|| ||
Sbjct 2061 GGACCGT-GTCCCTGTGCGGGGAG---GACA-----GTGGAAGC------CGACTTGCTCGG------------ 2107
Query 1679 TCGCCTCCATAGGGCTCCA----CGTGTTCCCCACGTTTGT----GGCGTACGAG----------CTCA--CGG 1732
.||| |||| || |||||.|| ||| ||.|.|| || |||| |||
Sbjct 2108 -AGCC----TAGG----CAGGACCGTGTCCC-------TGTGCGGGGAGGAC-AGTGGAAGCCGACTCACTCGG 2164
Query 1733 -------TGCTGGTGTTCCTCACCTTGTCAGTG-GTGGTGATGAAGTTTCTCCTGGC-GGCGCTGGTCCTGTCT 1797
.||.|| |||.||||..|| |.||.||.| |.|||| || ||| ||||.|
Sbjct 2165 AAACCTAGGCAGG--------ACCGTGTCCCTGTGCGGGGAGG--------CTTGGCAGG---TGG--CTGTTT 2217
Query 1798 CTCATTCTGCCGAGGAGCAGCCAG--TACATCAAGTGGA---------TCGTCTCTGCGG--------GGCT-- 1850
||.| |||||.| ||| |.|.|||| |.||||||.|.| ||||
Sbjct 2218 CTGA-------------CAGCCTGCCTAC--CCACTGGAGTTGTTCCTTAGTCTCTTCAGCTAGTCATGGCTAC 2276
Query 1851 --------TGCCCAGGTCAGCGAGTTTTCCTTTGTCCTGGGGAGCCGGGCGCG-----------AAGAGCGGGC 1905
|||||..||.|||..|| .|||||| .|||||||.|| .||.|..|||
Sbjct 2277 TACTGTTCTGCCCTCGTGAGCCGGT----GTTTGTC------TGCCGGGCCCGCCTTGGTCACACAGTGAAGGC 2340
Query 1906 GTCATCTCTCGGGAGGTG-------------TACCTCCTT---ATACTGAGT----------------GTGACC 1947
|||| || ||.|.|||| |.|..|.|| |.||..||| ||||
Sbjct 2341 -TCAT-TC-CGTGTGGTGGCTTGGGTGCGTCTGCACCATTTGGACACCAAGTCTGTGTTGGTCACACAGTGA-- 2409
Query 1948 ACGCTCA-GCCTCTTGCTCGCCCCGGTGCTGTGGAGAGCTGCA--AT-----CACGAGGTGTGTGCCCAGACCG 2013
|.||||| .||...||.|.||...||||| || ||||| || |||.|.||.|||
Sbjct 2410 AGGCTCATTCCGTGTGGTGGCTTGGGTGC-GT------CTGCACCATTTGGACACCAAGTCTGT---------- 2466
Query 2014 GAGAGAC--GGTC---CAGC-----CTC-------------- 2031
| |||| |||| |||
Sbjct 2467 ------CTTGGTCTCACAGCGAAGGCTCATTCCGTGTGGTGG 2502
