Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_08597
• Subject: NM_001301831.1
• Aligned Length: 1506
• Identities: 1185
• Gaps: 156

Alignment

Query    1  ------------------------ATGCAGAAATCTACAAATTCTGATACTTCCGTGGAAACACTGAATTCTAC  50
                                    .||||||.|||||||||.|.|||.|..||..||||||.||||||||||.|
Sbjct    1  ATGGAGAAAAGGACAAGCTGCAGTGTGCAGACATCTACAAACTGTGACAACTCTCTGGAAATACTGAATTCTGC  74

Query   51  CCGCCAAGGCACAGGAGCTGTGCAAATGAGAATCAAAAATGCCAACAGCCACCATGACAGGCTCAGCCAAAGTA  124
            ||.|||||..||||||||||||||||||||||||||||||||||||||||||||.|||||||..|||||||.||
Sbjct   75  CCACCAAGCTACAGGAGCTGTGCAAATGAGAATCAAAAATGCCAACAGCCACCAAGACAGGCAGAGCCAAACTA  148

Query  125  AATCCATGATCCTCACCGATGTCGGGAAGGTCACTGAACCTATATCCAGACACAGAAGGAATCATTCACAGCAT  198
            |||||||||||||||||||||..||||||||||||||||||||.|||.|.||||||||||||||||||||||||
Sbjct  149  AATCCATGATCCTCACCGATGCTGGGAAGGTCACTGAACCTATTTCCCGGCACAGAAGGAATCATTCACAGCAT  222

Query  199  ATCTTGAAAGATGTCATTCCTCCATTGGAACAACTGATGGTTGAAAAAGAAGGTTATCTGCAAAAAGCTAAAAT  272
            .|.|||||||||||||||||.|||.|.|||||.|..|||||||||||||||||.|||||.||||||||.|||||
Sbjct  223  GTGTTGAAAGATGTCATTCCACCACTAGAACATCCAATGGTTGAAAAAGAAGGGTATCTTCAAAAAGCCAAAAT  296

Query  273  TGCAGATGGAGGAAAGAAACTAAGGAAAAACTGGTCTACTTCCTGGATTGTTCTTTCTAGTCGAAGAATTGAAT  346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||.||||||||
Sbjct  297  TGCAGATGGAGGAAAGAAACTAAGGAAAAACTGGTCTACTTCCTGGATTGTTCTTTCTGGTCGAAAAATTGAAT  370

Query  347  TTTACAAAGAATCCAAGCAACAGGCTCTGTCC-AATATGAAAACTGGGCACAAACCAGAAAGTGTGGATTTGTG  419
            ||||||||||.||||||||.||.||||| ||| ||.||||||||..|||||||....|||||||||||||||||
Sbjct  371  TTTACAAAGACTCCAAGCAGCAAGCTCT-TCCTAACATGAAAACCAGGCACAACGTGGAAAGTGTGGATTTGTG  443

Query  420  TGGAGCACACATTGAATGGGCCAAGGAAAAATCGAGCAGAAAGAATGTCTTTCAGATCACAACAGTATCAGGAA  493
            |||.|||||.||.|||||||||||.||||||||.||||||||||.|||||||||||||||||||||.|||||||
Sbjct  444  TGGTGCACATATAGAATGGGCCAAAGAAAAATCAAGCAGAAAGAGTGTCTTTCAGATCACAACAGTGTCAGGAA  517

Query  494  ATGAGTTCCTTCTACAGTCAGATATTGACTTCATCATATTGGATTGGTTCCACGCTATCAAAAATGCAATTGAC  567
            ||||||||||||||||||||||||||||||||.|||||||||||||||||||.|||||||||||||||||||||
Sbjct  518  ATGAGTTCCTTCTACAGTCAGATATTGACTTCCTCATATTGGATTGGTTCCAAGCTATCAAAAATGCAATTGAC  591

Query  568  AGATTGCCAAAGGATTCAAGTTGTCCATCAAGAAACCTGGAATTATTCAAAATCCAAAGATCCTCTAGCACTGA  641
            ||||||||||||.||.||||||||...||      ||||||.||.|||||..|.||.||||||||.||..||||
Sbjct  592  AGATTGCCAAAGAATCCAAGTTGTGGGTC------CCTGGAGTTGTTCAATTTGCAGAGATCCTCAAGTTCTGA  659

Query  642  ATTGCTAAGTCACTACGACAGTGATATAAAAGAACAGAAACCAGAGCACAGAAAATCTTTAATGTTCAGACTGC  715
            |.|||..|||||||.|.|||..||||.||||||||||||||||||.|||||.||.||.||.|||||..||||||
Sbjct  660  ACTGCCGAGTCACTGCCACATCGATAGAAAAGAACAGAAACCAGAACACAGGAAGTCCTTCATGTTTCGACTGC  733

Query  716  ATCACAGTGCTTCCGATACAAGCGACAAAAATCGAGTTAAAAGCAGATTAAAGAAGTTTATTACCCGAAGACCT  789
            |.|||||||||||.||||||||.|||||.|||||.||.||.||||||.|.||||||||.||..||.||||||||
Sbjct  734  ACCACAGTGCTTCTGATACAAGTGACAAGAATCGCGTGAAGAGCAGACTGAAGAAGTTCATCTCCAGAAGACCT  807

Query  790  TCCCTGAAAACTCTGCAAGAAAAAGGACTTATTAAAGATCAAATTTTTGGCTCTCATCTGCACAAAGTGTGTGA  863
            ||.|||||||||.||||.|||||.|||||.||||||||||||||||||||||||||||||||||.|||||||||
Sbjct  808  TCTCTGAAAACTTTGCAGGAAAAGGGACTCATTAAAGATCAAATTTTTGGCTCTCATCTGCACACAGTGTGTGA  881

Query  864  ACGTGAAAATTCCACAGTTCCGTGGTTTGTAAAGCAATGCATTGAAGCTGTTGAGAAAAGAGGTCTAGATGTTG  937
            |||.|||.|||||||||||||.||||||||||||||||||||||||||||||||.||||||||.|||||.||||
Sbjct  882  ACGAGAACATTCCACAGTTCCATGGTTTGTAAAGCAATGCATTGAAGCTGTTGAAAAAAGAGGCCTAGACGTTG  955

Query  938  ATGGAATATATCGAGTTAGTGGCAATCTGGCAACAATACAGAAGTTAAGATTTATTGTCAACCAAGAAGAGAAG  1011
            |||||||.||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct  956  ATGGAATTTATCGAGTTAGTGGCAATCTTGCAACAATACAGAAGTTAAGATTTATTGTCAACCAAGAAGAGAAG  1029

Query 1012  CTGAATTTGGACGACAGCCAGTGGGAGGACATCCACGTTGTCACCGGAGCACTGAAGATGTTTTTCCGGGAGCT  1085
            |||||||||||.||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 1030  CTGAATTTGGATGACAGCCAGTGGGAGGACATCCACGTCGTCACCGGAGCACTGAAGATGTTTTTCCGGGAGCT  1103

Query 1086  GCCTGAGCCGCTCTTCCCTTACAGTTTCTTTGAGCAGTTTGTGGAAGCGATCAAAAAGCAAGACAACAACACAA  1159
            |.||||.||||||||||||||||||||||||||||.|||||||||.|||||||||||.|||||||.|||...||
Sbjct 1104  GTCTGAACCGCTCTTCCCTTACAGTTTCTTTGAGCGGTTTGTGGAGGCGATCAAAAAACAAGACAGCAATGAAA  1177

Query 1160  GAATTGAAGCTGTAAAATCTCTTGTACAAAAACTCCCTCCGCCAAATCGTGACACCATGAAAGTCCCCTTTGGA  1233
            .|||||||.||.|.|..|||||.|||.||...||||||||.|||||||.|||.|||||||||.|||.|||..||
Sbjct 1178  AAATTGAAACTATGAGGTCTCTGGTAAAACGTCTCCCTCCACCAAATCATGATACCATGAAAATCCTCTTCAGA  1251

Query 1234  CATCTAACTAAGATAGTGGCCAAAGCCTCCAAGAACCTCATGTCCACGCA-AAGCTTGGGGATTGTATTTGGAC  1306
            ||||||||.||..|      ||.|..||.|||             ||||| .|||||    .||| ||||   |
Sbjct 1252  CATCTAACCAAATT------CATAATCTTCAA-------------ACGCACCAGCTT----CTTG-ATTT---C  1298

Query 1307  CTACCCTTCTGCGAGCTGAAAATGAAACAGGAAACATGGCGATCCACATGGTCTA-CCAGAACCAGA---TAGC  1376
            |                       ||.|||     ||||          |.|.|| ||.||.|||||   .|||
Sbjct 1299  C-----------------------AATCAG-----ATGG----------GATTTAGCCTGATCCAGACCCCAGC  1334

Query 1377  TGAGCTCATG----------CTGAGTG-AGTACAGTAAGA-------TCTTCGGCTC-AGAGGAAGAC------  1425
            ||.| ||.||          ||.||.| |.|.|| |.|||       |.||| .||| |||||.||||      
Sbjct 1335  TGTG-TCCTGTTCCTGCCTACTAAGGGCACTGCA-TCAGAGAACATGTTTTC-TCTCTAGAGGGAGACCTTTCC  1405

Query 1426  --------------------------  1425
                                      
Sbjct 1406  AAGACCCTGCCTCCCAACTCTCCCTT  1431