Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08597
- Subject:
- XR_001783199.1
- Aligned Length:
- 2784
- Identities:
- 1260
- Gaps:
- 1366
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCAGCAACGAACACAGGCCTCCCCTTAGGACACGTGACCTTACTCCTTTCCGTTTTGTTGTAAGAGTCAGTAAA 74
Query 1 ---------------------------------------------------------ATGCAGAAATCTACAAA 17
.||||||.|||||||||
Sbjct 75 AGGAGTTGATGGCAGTTTTAATAGCAAGTCACCATGGAGAAAAGGACAAGCTGCAGTGTGCAGACATCTACAAA 148
Query 18 TTCTGATACTTCCGTGGAAACACTGAATTCTACCCGCCAAGGCACAGGAGCTGTGCAAATGAGAATCAAAAATG 91
.|.|||.|..||..||||||.||||||||||.|||.|||||..|||||||||||||||||||||||||||||||
Sbjct 149 CTGTGACAACTCTCTGGAAATACTGAATTCTGCCCACCAAGCTACAGGAGCTGTGCAAATGAGAATCAAAAATG 222
Query 92 CCAACAGCCACCATGACAGGCTCAGCCAAAGTAAATCCATGATCCTCACCGATGTCGGGAAGGTCACTGAACCT 165
|||||||||||||.|||||||..|||||||.|||||||||||||||||||||||..||||||||||||||||||
Sbjct 223 CCAACAGCCACCAAGACAGGCAGAGCCAAACTAAATCCATGATCCTCACCGATGCTGGGAAGGTCACTGAACCT 296
Query 166 ATATCCAGACACAGAAGGAATCATTCACAGCATATCTTGAAAGATGTCATTCCTCCATTGGAACAACTGATGGT 239
||.|||.|.||||||||||||||||||||||||.|.|||||||||||||||||.|||.|.|||||.|..|||||
Sbjct 297 ATTTCCCGGCACAGAAGGAATCATTCACAGCATGTGTTGAAAGATGTCATTCCACCACTAGAACATCCAATGGT 370
Query 240 TGAAAAAGAAGGTTATCTGCAAAAAGCTAAAATTGCAGATGGAGGAAAGAAACTAAGGAAAAACTGGTCTACTT 313
||||||||||||.|||||.||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TGAAAAAGAAGGGTATCTTCAAAAAGCCAAAATTGCAGATGGAGGAAAGAAACTAAGGAAAAACTGGTCTACTT 444
Query 314 CCTGGATTGTTCTTTCTAGTCGAAGAATTGAATTTTACAAAGAATCCAAGCAACAGGCTCTGTCC-AATATGAA 386
|||||||||||||||||.||||||.||||||||||||||||||.||||||||.||.||||| ||| ||.|||||
Sbjct 445 CCTGGATTGTTCTTTCTGGTCGAAAAATTGAATTTTACAAAGACTCCAAGCAGCAAGCTCT-TCCTAACATGAA 517
Query 387 AACTGGGCACAAACCAGAAAGTGTGGATTTGTGTGGAGCACACATTGAATGGGCCAAGGAAAAATCGAGCAGAA 460
|||..|||||||....||||||||||||||||||||.|||||.||.|||||||||||.||||||||.|||||||
Sbjct 518 AACCAGGCACAACGTGGAAAGTGTGGATTTGTGTGGTGCACATATAGAATGGGCCAAAGAAAAATCAAGCAGAA 591
Query 461 AGAATGTCTTTCAGATCACAACAGTATCAGGAAATGAGTTCCTTCTACAGTCAGATATTGACTTCATCATATTG 534
|||.|||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 592 AGAGTGTCTTTCAGATCACAACAGTGTCAGGAAATGAGTTCCTTCTACAGTCAGATATTGACTTCCTCATATTG 665
Query 535 GATTGGTTCCACGCTATCAAAAATGCAATTGACAGATTGCCAAAGGATTCAAGTTGTCCATCAAGAAACCTGGA 608
|||||||||||.|||||||||||||||||||||||||||||||||.||.||||||||...|| ||||||
Sbjct 666 GATTGGTTCCAAGCTATCAAAAATGCAATTGACAGATTGCCAAAGAATCCAAGTTGTGGGTC------CCTGGA 733
Query 609 ATTATTCAAAATCCAAAGATCCTCTAGCACTGAATTGCTAAGTCACTACGACAGTGATATAAAAGAACAGAAAC 682
.||.|||||..|.||.||||||||.||..|||||.|||..|||||||.|.|||..||||.||||||||||||||
Sbjct 734 GTTGTTCAATTTGCAGAGATCCTCAAGTTCTGAACTGCCGAGTCACTGCCACATCGATAGAAAAGAACAGAAAC 807
Query 683 CAGAGCACAGAAAATCTTTAATGTTCAGACTGCATCACAGTGCTTCCGATACAAGCGACAAAAATCGAGTTAAA 756
||||.|||||.||.||.||.|||||..|||||||.|||||||||||.||||||||.|||||.|||||.||.||.
Sbjct 808 CAGAACACAGGAAGTCCTTCATGTTTCGACTGCACCACAGTGCTTCTGATACAAGTGACAAGAATCGCGTGAAG 881
Query 757 AGCAGATTAAAGAAGTTTATTACCCGAAGACCTTCCCTGAAAACTCTGCAAGAAAAAGGACTTATTAAAGATCA 830
||||||.|.||||||||.||..||.||||||||||.|||||||||.||||.|||||.|||||.|||||||||||
Sbjct 882 AGCAGACTGAAGAAGTTCATCTCCAGAAGACCTTCTCTGAAAACTTTGCAGGAAAAGGGACTCATTAAAGATCA 955
Query 831 AATTTTTGGCTCTCATCTGCACAAAGTGTGTGAACGTGAAAATTCCACAGTTCCGTGGTTTGTAAAGCAATGCA 904
|||||||||||||||||||||||.||||||||||||.|||.|||||||||||||.|||||||||||||||||||
Sbjct 956 AATTTTTGGCTCTCATCTGCACACAGTGTGTGAACGAGAACATTCCACAGTTCCATGGTTTGTAAAGCAATGCA 1029
Query 905 TTGAAGCTGTTGAGAAAAGAGGTCTAGATGTTGATGGAATATATCGAGTTAGTGGCAATCTGGCAACAATACAG 978
|||||||||||||.||||||||.|||||.|||||||||||.||||||||||||||||||||.||||||||||||
Sbjct 1030 TTGAAGCTGTTGAAAAAAGAGGCCTAGACGTTGATGGAATTTATCGAGTTAGTGGCAATCTTGCAACAATACAG 1103
Query 979 AAGTTAAGATTTATTGTCAACCAAGAAGAGAAGCTGAATTTGGACGACAGCCAGTGGGAGGACATCCACGTTGT 1052
||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||.||
Sbjct 1104 AAGTTAAGATTTATTGTCAACCAAGAAGAGAAGCTGAATTTGGATGACAGCCAGTGGGAGGACATCCACGTCGT 1177
Query 1053 CACCGGAGCACTGAAGATGTTTTTCCGGGAGCTGCCTGAGCCGCTCTTCCCTTACAGTTTCTTTGAGCAGTTTG 1126
||||||||||||||||||||||||||||||||||.||||.||||||||||||||||||||||||||||.|||||
Sbjct 1178 CACCGGAGCACTGAAGATGTTTTTCCGGGAGCTGTCTGAACCGCTCTTCCCTTACAGTTTCTTTGAGCGGTTTG 1251
Query 1127 TGGAAGCGATCA-------------------------------AAAAGCA-----AGACAACAAC--------- 1155
||||.||||||| |||.||| |||.||||||
Sbjct 1252 TGGAGGCGATCAGAATGTTGGCTAAGAACACCTATTTTGTGCGAAATGCATCAGGAGAAAACAACAACCGGGCT 1325
Query 1156 ---------------------------ACAAG-------------AATTGAAGCTGTAAAATCTCTTGTACAAA 1189
||||| |||||||.||.|.|..|||||.|||.||.
Sbjct 1326 AGCAGTAAGATCCTCCTTGCATTAAAAACAAGACAGCAATGAAAAAATTGAAACTATGAGGTCTCTGGTAAAAC 1399
Query 1190 AACTCCCTCCGCCAAATCGTGACACCATGAAAGTCCCCTTTGGACATCTAACTAAGATAGTGGCCAAAGCCTCC 1263
..||||||||.|||||||.|||.|||||||||.|||.|||..||||||||||.|||||||||||||||||||||
Sbjct 1400 GTCTCCCTCCACCAAATCATGATACCATGAAAATCCTCTTCAGACATCTAACCAAGATAGTGGCCAAAGCCTCC 1473
Query 1264 AAGAACCTCATGTCCACGCAAAGCTTGGGGATTGTATTTGGACCTACCCTTCTGCGAGCTGAAAATGAAACAGG 1337
.||||.|||||||||||.|||||||||||||||||.||||||||.||||||||||||||.||||||||..||||
Sbjct 1474 CAGAATCTCATGTCCACCCAAAGCTTGGGGATTGTGTTTGGACCCACCCTTCTGCGAGCGGAAAATGAGTCAGG 1547
Query 1338 AAACATGGCGATCCACATGGTCTACCAGAACCAGATAGCTGAGCTCATGCTGAGTGAGTACAGTAAGATCTTCG 1411
.||..|.|||.||||||||||.|||||.|||||||||||.|||.|||||||||.|||||||..||||||||||.
Sbjct 1548 GAATGTAGCGGTCCACATGGTATACCAAAACCAGATAGCAGAGTTCATGCTGACTGAGTACGATAAGATCTTCA 1621
Query 1412 GCTCAGAGGAAGAC------------------------------------------------------------ 1425
||||||||||||||
Sbjct 1622 GCTCAGAGGAAGACTGACAGCCGAGACGAGCTACTGAGTATGTTCACATCTGTCTTGATGCCTAATATTTTTAC 1695
Query 1426 -------------------------------------------------------------------------- 1425
Sbjct 1696 ATTTCTGTAAACATATTTCTGAAATATTTTTTCCTTCCAAGCGACAGATGCTTCATTTTGTGAAAACTTAGTGA 1769
Query 1426 -------------------------------------------------------------------------- 1425
Sbjct 1770 TGATTTTGTATTTAAGTTCCAAACATTCGAATAAAATAAATGACAATATTTTCCTATATGTGTTCTACATTAAC 1843
Query 1426 -------------------------------------------------------------------------- 1425
Sbjct 1844 CCCTTGGGTGTTGGGGTTTTTTTCCAGCATTCTATAAATACATCATAAGTGTCTCACATTCTTAAATGATGTGT 1917
Query 1426 -------------------------------------------------------------------------- 1425
Sbjct 1918 ACAAGGTAGCATTAAGTCACAGCTCTTGTACCGCTCCTTGCCATGAGGTATATTCTGGTGGATGTGCAGCTGTG 1991
Query 1426 -------------------------------------------------------------------------- 1425
Sbjct 1992 TGAGTAAGTAGAGAAATTGTGGGTAAGAATGAGTGAGGGTATACACTTGTGCCATCTCAAGATCCATTTGCAGC 2065
Query 1426 -------------------------------------------------------------------------- 1425
Sbjct 2066 AACTCACCAGCTAGGTCTGCACATGCCTAAGCATCCACAGAGAGAACACAAGCGGGAAGAAGGCATCCATGTTC 2139
Query 1426 -------------------------------------------------------------------------- 1425
Sbjct 2140 CCCATCAAAATAGAGCCTTTTCACCTTTCAAAAGTCCAATCCAATGATGCTCAGTGACAGGTGAGCTTGGCAAA 2213
Query 1426 -------------------------------------------------------------------------- 1425
Sbjct 2214 CACAACACACTGAGTGGTAACTTTTCTGAAGAACAAAAGGATAGCTGAAGAGATTTGTTGTTGGGCTGTTCTCT 2287
Query 1426 -------------------------------------------------------------------------- 1425
Sbjct 2288 CTGTGTGTGAATACTATTGTGGTTCCACAAACACACCACGTTATAAATTAAAGGGATTAATCTTTATTTTATAC 2361
Query 1426 -------------------------------------------------------------------------- 1425
Sbjct 2362 AGGGATTGCATTTCTGTTCCATTTCGATTTTTCATCAAACCGTGTATCTTCCCTTTCCCCAAAATGTCATTTTA 2435
Query 1426 -------------------------------------------------------------------------- 1425
Sbjct 2436 TGTAGAATTTTTATTATGTTTTGAAGGATGTTTTATTGATGAAGTACACTAACTCCATCCAGAAAATGCTATTT 2509
Query 1426 -------------------------------------------------------------------------- 1425
Sbjct 2510 TTAAATGCTTGTATCAGTATTGCCTAAGGACTTCTTGACTAGACTCAAATTGTTTTATCCATTTGATGGTTACT 2583
Query 1426 -------------------------------------------------------------------------- 1425
Sbjct 2584 TTCAGTTATGATGGATAAACAAAGGATAAACTGTCTAGAATATATCAAATATTGCCATATTTTGAAAAGTATGT 2657
Query 1426 -------------------------------------------------------------------------- 1425
Sbjct 2658 ACTAGCTGAACACATCTCATGCCGTTTTATGAAAGAGTTCTGCTGTTAAAATGTAAAATCATGTTTGAGAGCTT 2731
Query 1426 ---------------------------------------------- 1425
Sbjct 2732 TTTAATAAATTCATGTGGAATGAATAAAACTAACCTAGTGTGATAA 2777
