Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08607
- Subject:
- NR_033702.2
- Aligned Length:
- 4969
- Identities:
- 1699
- Gaps:
- 3269
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGTGACGTCCTCCCAAGATGGCGGAGACAGAGTGAAGAAACTGTGTTCCCCCCTTGGGTTGCTATCGATCAAGG 74
Query 1 ------------------------ATGCGGTATTCGCACCACTGTGAGCACCTTTTAGAGAGACTGAACAAACA 50
||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GTAAAATTCCATTCTGATATCAAAATGCAGTATTCGCACCACTGTGAGCACCTTTTAGAGAGACTGAACAAACA 148
Query 51 GCGGGAAGCAGGTTTTCTCTGTGACTGTACCATAGTGATTGGGGAATTCCAGTTTAAAGCTCATAGGAATGTGC 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GCGGGAAGCAGGTTTTCTCTGTGACTGTACCATAGTGATTGGGGAATTCCAGTTTAAAGCTCATAGGAATGTGC 222
Query 125 TGGCCTCCTTTAGTGAGTATTTTGGTGCGATCTACAGAAGCACTTCTGAGAACAATGTCTTTCTTGATCAGAGT 198
||||||||||||
Sbjct 223 TGGCCTCCTTTA-------------------------------------------------------------- 234
Query 199 CAGGTGAAGGCTGATGGATTTCAGAAACTGTTGGAGTTTATATACACAGGAACTTTAAATCTTGACAGTTGGAA 272
||||||
Sbjct 235 --------------------------------------------------------------------TTGGAA 240
Query 273 TGTTAAAGAAATTCATCAGGCTGCTGACTATCTCAAAGTGGAAGAGGTGGTCACTAAATGCAAAATAAAGATGG 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGTTAAAGAAATTCATCAGGCTGCTGACTATCTCAAAGTGGAAGAGGTGGTCACTAAATGCAAAATAAAGATGG 314
Query 347 AAGATTTTGCTTTTATTGCTAATCCTTCTTCTACAGAGATATCTAGTATTACTGGAAACATTGAATTGAATCAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 AAGATTTTGCTTTTATTGCTAATCCTTCTTCTACAGAGATATCTAGTATTACTGGAAACATTGAATTGAATCAA 388
Query 421 CAGACTTGTCTTCTTACTCTGCGAGATTATAATAATCGAGAGAAATCAGAAGTATCTACAGATTTGATTCAGGC 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 CAGACTTGTCTTCTTACTCTGCGAGATTATAATAATCGAGAGAAATCAGAAGTATCTACAGATTTGATTCAGGC 462
Query 495 AAATCCTAAACAAGGCGCGTTAGCGAAAAAGTCATCTCAAACGAAAAAGAAGAAGAAGGCTTTCAACTCCCCGA 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 AAATCCTAAACAAGGCGCGTTAGCGAAAAAGTCATCTCAAACGAAAAAGAAGAAGAAGGCTTTCAACTCCCCGA 536
Query 569 AAACAGGGCAGAATAAAACAGTGCAATATCCCAGTGACATCTTAGAGAATGCATCTGTTGAATTATTCCTAGAT 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AAACAGGGCAGAATAAAACAGTGCAATATCCCAGTGACATCTTAGAGAATGCATCTGTTGAATTATTCCTAGAT 610
Query 643 GCAAATAAACTGCCCACACCTGTAGTAGAACAAGTTGCACAAATAAATGATAATTCAGAACTCGAGTTGACATC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 GCAAATAAACTGCCCACACCTGTAGTAGAACAAGTTGCACAAATAAATGATAATTCAGAACTCGAGTTGACATC 684
Query 717 AGTTGTGGAAAATACTTTTCCAGCACAAGATATTGTGCACACTGTTACAGTGAAACGGAAACGTGGAAAATCAC 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 AGTTGTGGAAAATACTTTTCCAGCACAAGATATTGTGCACACTGTTACAGTGAAACGGAAACGTGGAAAATCAC 758
Query 791 AGCCAAACTGTGCTCTGAAAGAACACTCTATGTCTAATATAGCCAGCGTCAAGAGTCCTTATGAGGCGGAGAAC 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 AGCCAAACTGTGCTCTGAAAGAACACTCTATGTCTAATATAGCCAGCGTCAAGAGTCCTTATGAGGCGGAGAAC 832
Query 865 TCCGGGGAAGAGCTGGATCAGAGGTATTCCAAGGCCAAGCCAATGTGTAACACATGTGGGAAAGTGTTTTCAGA 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TCCGGGGAAGAGCTGGATCAGAGGTATTCCAAGGCCAAGCCAATGTGTAACACATGTGGGAAAGTGTTTTCAGA 906
Query 939 AGCCAGCAGTTTGAGAAGGCACATGAGAATACATAAAGGAGTCAAACCTTACGTCTGCCACTTATGTGGAAAGG 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 AGCCAGCAGTTTGAGAAGGCACATGAGAATACATAAAGGAGTCAAACCTTACGTCTGCCACTTATGTGGAAAGG 980
Query 1013 CATTTACCCAATGTAACCAGCTGAAAACGCATGTAAGAACTCATACAGGTGAGAAGCCATACAAATGTGAATTG 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 CATTTACCCAATGTAACCAGCTGAAAACGCATGTAAGAACTCATACAGGTGAGAAGCCATACAAATGTGAATTG 1054
Query 1087 TGTGATAAAGGATTTGCTCAGAAATGTCAGCTAGTCTTCCATAGTCGCATGCATCATGGTGAAGAAAAACCCTA 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 TGTGATAAAGGATTTGCTCAGAAATGTCAGCTAGTCTTCCATAGTCGCATGCATCATGGTGAAGAAAAACCCTA 1128
Query 1161 TAAATGTGATGTATGCAACTTACAGTTTGCAACTTCTAGCAATCTCAAGATTCATGCAAGGAAGCATAGTGGAG 1234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TAAATGTGATGTATGCAACTTACAGTTTGCAACTTCTAGCAATCTCAAGATTCATGCAAGGAAGCATAGTGGAG 1202
Query 1235 AGAAGCCATATGTCTGTGATAGGTGTGGACAGAGATTTGCTCAAGCCAGCACACTGACCTATCATGTCCGTAGG 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 AGAAGCCATATGTCTGTGATAGGTGTGGACAGAGATTTGCTCAAGCCAGCACACTGACCTATCATGTCCGTAGG 1276
Query 1309 CATACTGGAGAAAAGCCTTATGTATGTGATACCTGTGGGAAGGCATTTGCTGTCTCTAGTTCTCTTATCACTCA 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 CATACTGGAGAAAAGCCTTATGTATGTGATACCTGTGGGAAGGCATTTGCTGTCTCTAGTTCTCTTATCACTCA 1350
Query 1383 TTCTCGAAAACATACAGGTGAAAAACCATACATATGTGGTATTTGTGGGAAAAGTTTTATTTCCTCAGGAGAGC 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 TTCTCGAAAACATACAGGTGAAAAACCATACATATGTGGTATTTGTGGGAAAAGTTTTATTTCCTCAGGAGAGC 1424
Query 1457 TCAACAAACACTTTCGGTCCCATACAGGAGAAAGACCATTTATCTGCGAATTATGTGGAAATTCTTACACAGAT 1530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 TCAACAAACACTTTCGGTCCCATACAGGAGAAAGACCATTTATCTGCGAATTATGTGGAAATTCTTACACAGAT 1498
Query 1531 ATTAAAAATTTAAAGAAGCACAAAACAAAAGTCCATTCTGGTGCAGATAAAACTCTAGACTCCAGTGCAGAGGA 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 ATTAAAAATTTAAAGAAGCACAAAACAAAAGTCCATTCTGGTGCAGATAAAACTCTAGACTCCAGTGCAGAGGA 1572
Query 1605 TCATACTTTGAGTGAACAGGATTCCATACAAAAAAGTCCTTTATCAGAAACTATGGATGTGAAGCCTTCTGATA 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 TCATACTTTGAGTGAACAGGATTCCATACAAAAAAGTCCTTTATCAGAAACTATGGATGTGAAGCCTTCTGATA 1646
Query 1679 TGACTTTACCATTAGCTCTTCCACTTGGGACTGAGGACCATCACATGCTTCTGCCTGTCACGGATACTCAGTCT 1752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1647 TGACTTTACCATTAGCTCTTCCACTTGGGACTGAGGACCATCACATGCTTCTGCCTGTCACGGATACTCAGTCT 1720
Query 1753 CCTACATCAGATACATTGTTGAGGTCAACTGTGAATGGGTATTCAGAACCACAGTTGATTTTTTTACAACAATT 1826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1721 CCTACATCAGATACATTGTTGAGGTCAACTGTGAATGGGTATTCAGAACCACAGTTGATTTTTTTACAACAATT 1794
Query 1827 ATAC---------------------------------------------------------------------- 1830
||||
Sbjct 1795 ATACTGACTTTGTAAGGAATATGGAATTGCTAAGATATCATTGGTAGCAAACATCTCTGGTAAGGTGCATATAT 1868
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 1869 TCATATTAAATTCCCATTCATTTGAGTTGTGACCATTATTTTTCATTCACTGAAGTAAAAGCACCTGATGCTGC 1942
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 1943 ATCACAACTGCAATGTTTGTTTTTATTTTTGGCTTTATGTCTATACTCCACAGAGAGCTTTTTAAGTAATGAAT 2016
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2017 TATGTAGCACTATTTTGGGTGGATGAGTTTTATTTTCTTTTAAAGCTGCCTTAATTCCATTTTTATTTTGCATT 2090
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2091 TTAGAATTGCCCTTCATTTACTAAATCAGCCAGTTAATGTGATTCAGTTGTGACCTGTGGGATTTTAAAATTTT 2164
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2165 CCTGCCCTCATAATTTAAGCAAAATCCACGATAGTATCAGCCCAAGAGTGTGTTGCTATTTGTAAGCCCCATGG 2238
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2239 ATCAATACATAAACTATGCATAAAAATAAAATTTCATATTTTCGCTCGTAAAAATTTAGGCGCTGAATAAGAAT 2312
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2313 TGTGCTATTTCTCTATTAATATATTGTTAGAAATAACTTTTCTAATGAAACAAAAATGTTTCTCAAAATCTAGA 2386
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2387 AAAGTGCATATAAATTTTTGTTCATTTAGAACTGAGTATTCTGGAGAAAACCAATGGTCAGCACTTTTGGTTTG 2460
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2461 AGTTATCTGAGATTGTATTTTCAAAATGAATTTTAAGTAGATATTTGGTGTTTTTATCTTGTCAAAGACAGTTT 2534
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2535 CAAAATTTGATTCAGTTTATGTTTTATTCCGTTCTAAAATATTGGAGATGAGGAAAATGTACTTGAGTTTTGAA 2608
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2609 ATATTTTGGTAAGCCTCTCTTACTCCTGTTATGCACTTTTTAAAATAAATACTGAATTCCAGAAAGAATTTTCT 2682
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2683 AGATATAAACTTAATGCATACTAGAAATCACTTGGCTTCTAAATTTGGTACATTATATTGCATAAAGAGTTAAG 2756
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2757 AAATTAACCTCAATTATAAGTAAACATTTTGAGTTACCAGAAAGCCAACTATAGTTAAATATTTTATATCTGAG 2830
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2831 TTTTCTATAAGTTTGGGGTTTGTTAATTTTATAAATTAAACCACAACTTTTGGTGGTGGTTGTAGTTTCACAAT 2904
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2905 GGTCCTTTTCCTTCCAAATGAATGTAGAAAATTCGTTATTATCCTGATATTTGCACCACTCATCCCCATGCCAC 2978
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 2979 TTTTCCCACATATTAATTTATTTCACTGCCTGATCTTTGGATATGAAATTATGAGTTCCACAAAGTCAATTTTT 3052
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3053 ATAGTGCCAATCAAACAGCATGGTGATATTCTTTTTCTTTTTTTTTCCCCCCACAAGGCTGTTGTTCAGTGTGA 3126
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3127 GATGACATCATTTCTTATTTCTGCCATGCTGTGGCTTTTTTGTGTTCTGCTTTTAAACTACACCTGTAGTACAG 3200
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3201 TTAATATGTTTTTTATTGGTATTGATTTCTTTAATTCATTAATTTTCTCTATTTGGGACCCAAGTCATAAGAAC 3274
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3275 CAATTAGAGGACATAATAAAAACACTTAATGCTTGTAGTCTGTAGAGATCTTCACCATTTCACAGCACACACAT 3348
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3349 TATTTTCATAATAAATTGCCACTGGTGGGACATGGGACTGACTTATTTGAATAGAGTTTGAAATACCACCTTTG 3422
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3423 TATGATGCAAACAATATTTGATTATTTTATCTAAGAAATCTATGCATGTGTATCAAGTTAAAATAGTGGGTTTA 3496
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3497 AATACAATTTACAAAGCATTAGAATGTTACCTAATCTCTTCTGGGTTAAATGTGATAGGAATGTATTGGAATGT 3570
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3571 GAAGAAATTATAGAAAATTAAAAGACTCAGCCTCTTTAGGAAGTTTGCTAAAATGGAGAGGTTATGTTTAATTT 3644
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3645 ATTTATATCTTCGTTAATCCAAGCATCTAATGAACAAAAAACTGCTACAGTGACGTCATAATTCTATAAGGGCA 3718
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3719 ATAGTTGCCAAATTTCCTCTGGTATTATTAGCATTCTGCCTTTGCATAGATTAGCCTTCAAATTTATTATTTTT 3792
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3793 AGTATTATTTGATACGATTGAAGTGGCTAAGATTGATTGAGCTTTTCTTGATCACATTTTCTGCTTCTTAGCTA 3866
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3867 AAGTAATTTTATTTAAATTGACATGGCTTGAGTTGTCATCATTTTCTGCTCTTCTAGAATGATGTGTAGAGAAA 3940
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 3941 ACTTGAAGATACTATCCCTTCTTTGGCATTCTTCTCTTAATGCTATGCTATTATTTATCATAATATGCATATAT 4014
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4015 TTAGTTGTATCTGGTATCATTCTAACACTCATAACTACCATTTTAGTTAAGTCCAACTTTATATTTGTTACAAT 4088
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4089 GCAGTGTTTTGGGAAAGGTCTATTAGTAATTATTTAAGTATTACATATTTTTATGGAAGTCTTTAGAAGGTGAA 4162
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4163 GATCTTACTGAGAAACTATTTTCTAAATAAATTTAATTTTCTTTTGTATTTGTATCAGATCATGCCTACTGTAT 4236
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4237 GTTAGATTTTAGACTATTTTAAAAGAAACCGTAGATTATATAAAAATTTTTTTGCTGTTTTTAAATGGCATTTG 4310
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4311 TCTTATGTTTAATTTCACAGGATGATTTTGATAGACAAATTTTAGAAAACCTTTTTTCAAAGGTAATGGTTCTA 4384
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4385 TCAGTTTCATTCCAACAGTAGCTAATTTCTGTGTTTCAGTCCTACAGAAATTGTGTGAGTAGTTGAAATAATGT 4458
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4459 ACATGTACTAGTTTTTTTAAGTATTCTAAATAGTTCTAACATTTAATGCATATCAGAAACATGCTTAAGAAATA 4532
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4533 ACAATATCCAGGCCCACCCCACCTATTGAATCAGACAGTTCCCAGGGCATATATATGCTGGGGAAGCCCCATAG 4606
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4607 GTGATTTTAATGTATACCAAACATGTAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAATGACGTGATCTCAG 4680
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4681 CTAACTGCAACCTCTGCCTCCTGGATTCAAGCAATTCTCCGGCCTCAGCCTCCTGAGTAGCTGGTACTACAGGT 4754
Query 1831 -------------------------------------------------------------------------- 1830
Sbjct 4755 GCGCGCCACCACACCTGACTAATTTTTGTTAGAGATGGGGTTTCATTCTGTTGGCCAGGCTGGTCTCGAACTCC 4828
Query 1831 ----------- 1830
Sbjct 4829 TGACCTCAGGT 4839
