Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08649
- Subject:
- XR_001785237.1
- Aligned Length:
- 2552
- Identities:
- 1784
- Gaps:
- 580
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCGGCTCACGTGGGCGGGTGGGAGCAGCTGAAAGTCCGCTCTGGAGACTGGGCTGTCCTCTCGCGCGCGGCGCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCCGGGGCGGCGGCGAAGGAGGAGGGAGAGAGGCGGCGGTGGCGACGGCGAAAGAGGAGGGGAAGACGGGGGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGCGTCGGACTGGAGCCGATCGGCGGTGCGAGCTGCCCGGGGCGCAGTCGTGAGCTCGCCCGACGGGCCCCTAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCCGGAGCTACACCCTGCGGTGCCCAGCTCTGCCCACGTTTGTGCCCCCACGAGGAGCGCGCCGGGGCTGCCCC 296
Query 1 ----ATGACGGGAGGAAGGTTCGACTTCGACGATGGCGGCACCTACTGCGGCGGCTGGGAGGAGGGCAAGGCGC 70
||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CCGAATGACGGGCGGAAGGTTCGACTTCGACGATGGCGGCACCTACTGCGGCGGCTGGGAGGAGGGCAAGGCGC 370
Query 71 ACGGGCATGGCATCTGCACGGGGCCCAAGGGCCAGGGCGAGTACTCGGGCTCCTGGTCGCACGGCTTCGAGGTG 144
||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct 371 ACGGGCATGGCATCTGCACGGGGCCCAAGGGCCAGGGCGAGTACTCTGGCTCCTGGTCGCACGGCTTCGAGGTG 444
Query 145 GTCGGAGGCTACACCTGGCCCAGCGGCAACACCTACCAGGGCTACTGGGCGCAGGGCAAGCGGCACGGGCTGGG 218
||.||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTTGGAGTCTACACCTGGCCCAGCGGCAACACCTACCAGGGCTACTGGGCGCAGGGCAAGCGGCACGGGCTGGG 518
Query 219 GGTGGAGACGAAGGGCAAGTGGATGTACCGGGGGGAGTGGTCACATGGTTTCAAGGGGCGCTACGGGGTCCGGC 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GGTGGAGACGAAGGGCAAGTGGATGTACCGGGGGGAGTGGTCACATGGTTTCAAGGGGCGCTACGGGGTCCGGC 592
Query 293 AGAGCCTGTGCACCCCCGCTCGCTACGAGGGTACCTGGAGTAACGGGCTGCAAGACGGGTACGGCGTGGAGACC 366
|||||.|||||||||||||.|||||||||||.||||||||||||||||||||.|||||||||||||||||||||
Sbjct 593 AGAGCTTGTGCACCCCCGCCCGCTACGAGGGGACCTGGAGTAACGGGCTGCAGGACGGGTACGGCGTGGAGACC 666
Query 367 TACGGGGACGGAGGTACCTACCAGGGCCAGTGGGCCGGAGGCATGCGGCATGGCTACGGCGTGCGCCAGAGCGT 440
||||||||.||||||||||||||||||||||||||.|||||||||||||||||||||||.||.||||||||.||
Sbjct 667 TACGGGGATGGAGGTACCTACCAGGGCCAGTGGGCTGGAGGCATGCGGCATGGCTACGGTGTCCGCCAGAGTGT 740
Query 441 GCCCTACGGCATGGCCACGGTGATCCGCTCACCGCTGCGTACCTCGCTGGCCTCGCTGCGCAGCGAGCAGAGCA 514
||||||.|||||||||||.||||||||.||.||||||||.||.||.|||||||||||||||||.||||||||||
Sbjct 741 GCCCTATGGCATGGCCACAGTGATCCGTTCCCCGCTGCGCACTTCCCTGGCCTCGCTGCGCAGTGAGCAGAGCA 814
Query 515 ATGGCAGCGTGCTCCACGACGCCGCAGCC---GCCGCCGACAGCCCGGCCGGCACCCGCGGCGGTTTCGTGCTC 585
|.|||||||||||.||.||.||.|||||| ||.||.|||||||||||.||.||..|.||.||.|||||||||
Sbjct 815 ACGGCAGCGTGCTGCATGAAGCTGCAGCCGCAGCTGCAGACAGCCCGGCTGGAACAAGAGGTGGCTTCGTGCTC 888
Query 586 AACTTCCACGCAGACGCTGAGCTAGCGGGCAAGAAGAAGGGCGGCCTCTTCCGGAGGGGCTCCCTTCTTGGAAG 659
||||||||.||.|||.|.||.|| |||||||||||||||||||||||||||..||||.||||||||.||.||
Sbjct 889 AACTTCCATGCGGACACGGAACT---GGGCAAGAAGAAGGGCGGCCTCTTCCGTCGGGGTTCCCTTCTCGGCAG 959
Query 660 CATGAAACTTCGCAAGTCCGAATCCAAGTCTTCCATCTCGAGCAAGCGCAGCTCTGTCCGCAGCGACGCGGCCA 733
|||||||||.|||||||||||||||||||||||||||||.||||||||||||||.||||||||.||.||.||||
Sbjct 960 CATGAAACTCCGCAAGTCCGAATCCAAGTCTTCCATCTCCAGCAAGCGCAGCTCGGTCCGCAGTGATGCAGCCA 1033
Query 734 TGAGCAGAATTAGTTCCAGCGATGCCAACTCCACGATCAGCTTTGGCGATGTAGATTGTGATTTTTGCCCGGTG 807
||||||||||.|||||.|||||||||||||||||.|||||||||||.||.||.||.||||||||||||||.|||
Sbjct 1034 TGAGCAGAATCAGTTCTAGCGATGCCAACTCCACCATCAGCTTTGGTGACGTCGACTGTGATTTTTGCCCCGTG 1107
Query 808 GAAGACCACGTGGACGCCACCACCACGGAAACCTACATGGGCGAGTGGAAGAACGACAAGCGCAACGGCTTCGG 881
|||||.||||||||.|||||.|||||||||||||||||||||||||||||||||||.||||||||.||||||||
Sbjct 1108 GAAGATCACGTGGATGCCACTACCACGGAAACCTACATGGGCGAGTGGAAGAACGATAAGCGCAATGGCTTCGG 1181
Query 882 CGTTAGCGAGCGCTCCAATGGCATGAAGTATGAAGGGGAGTGGGCAAATAACAAGAGGCATGGATATGGCTGTA 955
|.|.|||||.||||||||||||||||||||.|||||.||||||||.|||||||||||||||||.||.|||||.|
Sbjct 1182 CATCAGCGAACGCTCCAATGGCATGAAGTACGAAGGCGAGTGGGCCAATAACAAGAGGCATGGGTACGGCTGCA 1255
Query 956 CCGTGTTTCCTGACGGCTCCAAAGAAGAGGGAAAATACAAAAATAATATTCTGGTCCGTGGGATAAGGAAGCAG 1029
|.|||||||||||.|||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 1256 CTGTGTTTCCTGATGGCTCCAAAGAAGAGGGAAAATACAAAAATAATATCCTGGTCCGTGGGATAAGGAAGCAG 1329
Query 1030 CTTATACCAATAAGACATACAAAAACTAGGGAGAAGGTGGACAGAGCAATTGAAGGCGCCCAAAGGGCAGCTGC 1103
|||||||||||||||.|||||||||||||.|||||||||||.||||||||||||||.||.||||||||.||.||
Sbjct 1330 CTTATACCAATAAGAAATACAAAAACTAGAGAGAAGGTGGATAGAGCAATTGAAGGTGCACAAAGGGCGGCAGC 1403
Query 1104 CATGGCCAGAACCAAAGTGGAAATAGCAAATTCAAGGACTGCACATGCCAGAGCGAAGGCCGATGCCGCCGACC 1177
||||||||||||||||||||||||||||||.|||||||||||||||||||||||.||.||.|||||.|||||||
Sbjct 1404 CATGGCCAGAACCAAAGTGGAAATAGCAAACTCAAGGACTGCACATGCCAGAGCAAAAGCTGATGCTGCCGACC 1477
Query 1178 AGGCCGCGCTGGCCGCTCGCCAGGAGTGCGACATCGCGAGAGCTGTGGCCAGGGAGCTGTCACCCGATTTCTAC 1251
|.||.||.|||||.||||||||||||||||||||.||.||||||||||||||.|||||||||||.|||||||||
Sbjct 1478 AAGCTGCACTGGCTGCTCGCCAGGAGTGCGACATAGCAAGAGCTGTGGCCAGAGAGCTGTCACCTGATTTCTAC 1551
Query 1252 CAACCAGGCCCTGATTACGTCAAACAGAGATTTCAGGAAGGTGTAGATGCTAAAGAAAATCCAGAAGAAAAGGT 1325
|||||||||||.|||||..|||||||.||||.|||||||||.|.||||..||||||||||||||||||||||||
Sbjct 1552 CAACCAGGCCCCGATTATATCAAACAAAGATGTCAGGAAGGGGGAGATATTAAAGAAAATCCAGAAGAAAAGGT 1625
Query 1326 ACCAGAAAAGCCACCTACACCAAAGGAGTCTCCTCATTTTTATCGCAAAGGCACGACACCCCCAAGATCTCCTG 1399
.|.|||||||||.||..||||||||||.||||||||||||||||||||||||||.||||||||.||.|||||||
Sbjct 1626 CCTAGAAAAGCCTCCGTCACCAAAGGAATCTCCTCATTTTTATCGCAAAGGCACCACACCCCCCAGGTCTCCTG 1699
Query 1400 AGGCAAGTCCCAAACACAGCCACTCTCC---TGCTTCCTCCCCAAAGCCCCTGAAGAAGCAAAACCCCAGCTCA 1470
||.|||||||||||||.||||||||||| ..|||||||||||.|||||...|||||.||||||||||||.||
Sbjct 1700 AGTCAAGTCCCAAACAGAGCCACTCTCCCCAGCCTTCCTCCCCAGAGCCCTCAAAGAAACAAAACCCCAGCCCA 1773
Query 1471 GGGGCGAGACTCAACCAAGACAAAAGGAGTGTGGCTGATGAGCAGGTGACGGCCATTGTCAATAAGCCCTTGAT 1544
|||||.|||||||..|||||.|||..|||..|.|||||.||.||.|||||.|||.||||||||||.||||..||
Sbjct 1774 GGGGCAAGACTCAGTCAAGATAAACAGAGCCTAGCTGAGGAACAAGTGACAGCCTTTGTCAATAAACCCTCTAT 1847
Query 1545 GTCAAAGGCTCCCACGAAGGAGGCAGGAGCGGTTGTGCCCCAGTCCAAGTACTCTGGCCGCCACCACATCCCCA 1618
|||||||||||||.|.||.||....|||||...||| ||||||||||||||||||||||||..||||||
Sbjct 1848 GTCAAAGGCTCCCGCAAAAGAATTGGGAGCATCTGT------GTCCAAGTACTCTGGCCGCCACCATGTCCCCA 1915
Query 1619 ACCCCAGTAACGGGGAGCTGCATTCTCAGTATCACGGCTACTACGTGAAGCTGAACGCCCCCCAGCACCCTCCA 1692
|||||||.||||||||||||||.||||||||||||||||||||.|||||.||||||.|.||||||||.||||||
Sbjct 1916 ACCCCAGCAACGGGGAGCTGCACTCTCAGTATCACGGCTACTATGTGAAACTGAACACACCCCAGCATCCTCCA 1989
Query 1693 GTAGACGTGGAGGACGGC-GATGGATCCAGCCAGTCTTCCTCAGCACTGGTGCACAAG-CCATCCGCTAACAAG 1764
|.||||..||||||.|.| || |||..|||||||||||||||||||.||||.| |.|| |||||..||||||||
Sbjct 1990 GAAGACAGGGAGGATGACAGA-GGAGTCAGCCAGTCTTCCTCAGCATTGGTAC-CTAGACCATCACCTAACAAG 2061
Query 1765 TGGAGTCCCTCCAAATCTGTGACAAAACCAGTTGCCAAAGAAAGCAAAGCTGAGCCAAAAGCTAAGAAGTCTGA 1838
|||.|||||.|.||||||||||||||||||||||||||||||||||||.|||||||||||||.|||||||||||
Sbjct 2062 TGGGGTCCCCCTAAATCTGTGACAAAACCAGTTGCCAAAGAAAGCAAAACTGAGCCAAAAGCAAAGAAGTCTGA 2135
Query 1839 ACTTGCTATACCAAAGAATCCAGCAAGCAACGATTCATGCCCTGCTTTGGAAAAAGAAGCCAATTCAGGCCCTA 1912
||||||||||||||||||||||||||||||.|||.|.||||||.|.|||||||||||||||||.||.|||||||
Sbjct 2136 ACTTGCTATACCAAAGAATCCAGCAAGCAATGATACCTGCCCTTCCTTGGAAAAAGAAGCCAACTCTGGCCCTA 2209
Query 1913 ATTCAATCATGATTGTCCTTGTCATGCTGTTGAATATCGGGTTGGCCATTCTTTTTGTTCACTTTCTAACT--- 1983
||||.||||||||||||||.|||||||||||||||||.|||||||||||||||||||||||||||||.|||
Sbjct 2210 ATTCCATCATGATTGTCCTGGTCATGCTGTTGAATATTGGGTTGGCCATTCTTTTTGTTCACTTTCTGACTTGA 2283
Query 1984 -------------------------------------------------------------------------- 1983
Sbjct 2284 TTGGAATTAGGACAGGACAGGGCAAGCTGTAACTGGGAAGTGCTGCTGATTATCAATGAGAGTGCCAGCCTCAG 2357
Query 1984 -------------------------------------------------------------------------- 1983
Sbjct 2358 CGAATCGGAGCCTGAAACCTGCTTGCTCAGGGGTGGAGCTTCCTGCTCATTCGTTCTGCCATGCCCACTGCTGG 2431
Query 1984 -------------------------------------------------------------------------- 1983
Sbjct 2432 AACCTGCGGAGCCACACACGTGCACCTTTCTACTGGACCAGAGATTATTCGGCAGGAATCGGGTCCCCTCCCCC 2505
Query 1984 ------------------------------------ 1983
Sbjct 2506 TTCCTTCATAACTAGTGTCGCAACAATAAAATTTGA 2541
