Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08690
- Subject:
- NR_146742.1
- Aligned Length:
- 2673
- Identities:
- 1729
- Gaps:
- 943
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGGGAGGCGGGTCGTATAAGGAGGTGGGGCGAGGCCGGAACTGGCGGACTGCGGCGCACTTCCGTAGAGGTGGA 74
Query 1 -ATGGCGTGCGGCTTTCGCCGCGCTATTGCTTGCC--------------------------------------- 34
||||||||||||||||||||||||||||||||||
Sbjct 75 CATGGCGTGCGGCTTTCGCCGCGCTATTGCTTGCCAGGTATGGATCCCGGAGCGCGCAGAGGAGTCCCTGAGGA 148
Query 35 -------------------------------------------------------------------------- 34
Sbjct 149 GCTAGGGACCCCAAAGGCCTTTCACCGCTGCGGGCCAGTCCTCAGTCAGCTGGAGGGTGGGTCCCACGGAATCC 222
Query 35 -------------------------------------------------------------------------- 34
Sbjct 223 TGTTAGTTTCTACCACCTCCTCCCCCTTCTCTGGAGCTGGTGGAGCTTCAGAAGTCCTGTGGAGCGTCGGCTGG 296
Query 35 ----------------------------------AGCTTTCCAGAGTGTTGAATCTTCCACCAGAAAACTTGAT 74
||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GATCAGTTTGTCTCGGTGAAAAGTAAACTTTGAAAGCTTTCCAGAGTGTTGAATCTTCCACCAGAAAACTTGAT 370
Query 75 CACATCAATATCTGCAGTTCCAATTTCCCAAAAAGAAGAAGTAGCTGATTTTCAGCTTTCTGTGGATTCTTTAT 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CACATCAATATCTGCAGTTCCAATTTCCCAAAAAGAAGAAGTAGCTGATTTTCAGCTTTCTGTGGATTCTTTAT 444
Query 149 TGGAAAAAGACAATGACCATTCAAGACCAGATATTCAAGTTCAAGCCAAGAGACTAGCAGAGAAGCTAAGATGT 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TGGAAAAAGACAATGACCATTCAAGACCAGATATTCAAGTTCAAGCCAAGAGACTAGCAGAGAAGCTAAGATGT 518
Query 223 GATACAGTGGTGAGTGAAATCAGTACTGGTCAAAGGACTGTAAATTTCAAAATAAACAGAGAGCTCTTAACAAA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GATACAGTGGTGAGTGAAATCAGTACTGGTCAAAGGACTGTAAATTTCAAAATAAACAGAGAGCTCTTAACAAA 592
Query 297 GACAGTGCTACAACAAGTAATTGAAGATGGCTCAAAATATGGATTAAAAAGTGAACTTTTCTCTGGACTTCCCC 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GACAGTGCTACAACAAGTAATTGAAGATGGCTCAAAATATGGATTAAAAAGTGAACTTTTCTCTGGACTTCCCC 666
Query 371 AGAAGAAGATTGTGGTTGAATTCA-------------------------------------------------- 394
||||||||||||||||||||||||
Sbjct 667 AGAAGAAGATTGTGGTTGAATTCAGGGTAGCAAGACCTCTTTACAAAGGTACTCAAGGCTCTAAGATAGTGAAA 740
Query 395 -------------------------------------------------------------------------- 394
Sbjct 741 TCATCTAGTCTTGAAACAGGCACAGCATCATTTTTGTCACTTTCTGCTGATGAAAGCAAGTCACAAGATCACCC 814
Query 395 --------------------------------------GTTCACCTAATGTTGCCAAAAAATTTCATGTTGGAC 430
||||||||||||||||||||||||||||||||||||
Sbjct 815 CAGATTCAAGGGAAGAAAAATAGAGTACATCTCTTAATGTTCACCTAATGTTGCCAAAAAATTTCATGTTGGAC 888
Query 431 ATTTGCGTTCTACCATCATAGGAAATTTTATAGCAAATCTCAAAGAAGCTTTAGGACATCAAGTAATAAGAATA 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ATTTGCGTTCTACCATCATAGGAAATTTTATAGCAAATCTCAAAGAAGCTTTAGGACATCAAGTAATAAGAATA 962
Query 505 AATTACCTTGGCGATTGGGGCATGCAGTTTGGTCTTCTGGGAACTGGCTTCCAGCTGTTTGGCTATGAGGAAAA 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AATTACCTTGGCGATTGGGGCATGCAGTTTGGTCTTCTGGGAACTGGCTTCCAGCTGTTTGGCTATGAGGAAAA 1036
Query 579 ACTGCAGTCCAATCCTCTACAGCATCTCTTTGAAGTTTATGTACAAGTTAATAAAGAAGCAGCAGATGATAAAA 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ACTGCAGTCCAATCCTCTACAGCATCTCTTTGAAGTTTATGTACAAGTTAATAAAGAAGCAGCAGATGATAAAA 1110
Query 653 GTGTAGCAAAAGCAGCACAGGAGTTCTTCCAACGATTGGAACTGGGCGATGTGCAAGCACTTTCACTGTGGCAA 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTGTAGCAAAAGCAGCACAGGAGTTCTTCCAACGATTGGAACTGGGCGATGTGCAAGCACTTTCACTGTGGCAA 1184
Query 727 AAATTTCGGGACTTGAGCATTGAAGAGTACATTCGGGTTTACAAGCGTCTGGGAGTATATTTTGATGAATATTC 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AAATTTCGGGACTTGAGCATTGAAGAGTACATTCGGGTTTACAAGCGTCTGGGAGTATATTTTGATGAATATTC 1258
Query 801 AGGAGAATCATTTTATCGTGAAAAATCTCAAGAGGTCTTAAAGTTGCTGGAGAGTAAAGGACTCCTACTGAGAA 874
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 1259 AGGAGAATCATTTTATCGTGAAAAATCTCAAGAGGTCTTAAAGTTGCTGGAGAGTAAAGGACTCCTACTGAAAA 1332
Query 875 CAATAAAAGGAACGGCTGTAGTAGATCTCTCTGGGAATGGCGACCCCTCCTCAATTTGTACTGTAATGCGAAGT 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CAATAAAAGGAACGGCTGTAGTAGATCTCTCTGGGAATGGCGACCCCTCCTCAATTTGTACTGTAATGCGAAGT 1406
Query 949 GATGGGACTTCTCTCTATGCAACCAGAGATCTTGCAGCTGCTATAGATCGAATGGACAAGTATAATTTTGATAC 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GATGGGACTTCTCTCTATGCAACCAGAGATCTTGCAGCTGCTATAGATCGAATGGACAAGTATAATTTTGATAC 1480
Query 1023 AATGATATATGTGACAGATAAAGGACAAAAAAAGCATTTTCAGCAAGTATTCCAAATGCTGAAGATCATGGGAT 1096
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AATGATATATGT----GATAAAGGACAAAAAAAGCATTTTCAGCAAGTATTCCAAATGCTGAAGATCATGGGAT 1550
Query 1097 ATGACTGGGCAGAAAGGTGCCAGCACGTGCCCTTTGGAGTAGTACAGGGAATGAAGACTCGAAGAGGAGATGTC 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 ATGACTGGGCAGAAAGGTGCCAGCACGTGCCCTTTGGAGTAGTACAGGGAATGAAGACTCGAAGAGGAGATGTC 1624
Query 1171 ACTTTCCTGGAAGATGTTTTAAATGAGATTCAATTAAGGATGCTACAGAACATGGCTTCAATTAAGACAACTAA 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625 ACTTTCCTGGAAGATGTTTTAAATGAGATTCAATTAAGGATGCTACAGAACATGGCTTCAATTAAGACAACTAA 1698
Query 1245 AGAACTCAAGAACCCACAAGAGACTGCAGAGAGGGTCGGGCTCGCAGCACTCATTATTCAGGACTTCAAAGGTT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1699 AGAACTCAAGAACCCACAAGAGACTGCAGAGAGGGTCGGGCTCGCAGCACTCATTATTCAGGACTTCAAAGGTT 1772
Query 1319 TACTCTTATCTGACTACAAGTTCAGCTGGGATCGTGTTTTCCAGAGTCGCGGGGACACAGGAGTCTTCCTACAG 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1773 TACTCTTATCTGACTACAAGTTCAGCTGGGATCGTGTTTTCCAGAGTCGCGGGGACACAGGAGTCTTCCTACAG 1846
Query 1393 TACACACACGCCCGCCTCCACAGTTTGGAAGAGACTTTTGGATGTGGGTACCTGAATGACTTCAACACTGCTTG 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1847 TACACACACGCCCGCCTCCACAGTTTGGAAGAGACTTTTGGATGTGGGTACCTGAATGACTTCAACACTGCTTG 1920
Query 1467 TTTACAAGAGCCACAGTCTGTTTCAATTCTTCAGCATCTTCTCAGGTTCGACGAGGTGCTTTATAAATCATCTC 1540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 TTTACAAGAGCCACAGTCTGTTTCAATTCTTCAGCATCTTCTCAGGTTCGACGAGGTGCTTTATAAATCATCTC 1994
Query 1541 AGGACTTTCAACCCAGGCATATCGTCAGTTACCTTCTAACTTTAAGTCATCTTGCAGCTGTGGCACACAAAACA 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1995 AGGACTTTCAACCCAGGCATATCGTCAGTTACCTTCTAACTTTAAGTCATCTTGCAGCTGTGGCACACAAAACA 2068
Query 1615 CTACAAATAAAAGATAGTCCTCCTGAAGTGGCTGGGGCCAGACTTCATCTTTTCAAAGCTGTCCGTTCTGTCCT 1688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2069 CTACAAATAAAAGATAGTCCTCCTGAAGTGGCTGGGGCCAGACTTCATCTTTTCAAAGCTGTCCGTTCTGTCCT 2142
Query 1689 AGCCAATGGAATGAAACTTCTTGGAATAACACCTGTATGTAGGATG---------------------------- 1734
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2143 AGCCAATGGAATGAAACTTCTTGGAATAACACCTGTATGTAGGATGTAATTTCCATTAAAATGGCTTTTAAAAT 2216
Query 1735 -------------------------------------------------------------------------- 1734
Sbjct 2217 GTCAAGTGAATTCTAGTTATCTATTCTGAGATGCCTTGCTGTTCAGAATAAATTTAAATTTTTTTTTTTTTTTT 2290
Query 1735 -------------------------------------------------------------------------- 1734
Sbjct 2291 TTGAGATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGTGTGATGTTGGCTCACTGCAACCTCCACC 2364
Query 1735 -------------------------------------------------------------------------- 1734
Sbjct 2365 TCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGTGCCATCACGCCAGG 2438
Query 1735 -------------------------------------------------------------------------- 1734
Sbjct 2439 CTAATTTTGTATTTTTAGTAGAGACAGGGTTTCTCTATGTTGGTCAGGCTGGTCTTGCACTCCCGACCTCAGGT 2512
Query 1735 -------------------------------------------------------------------------- 1734
Sbjct 2513 TATCTGTCTGCCTTGGCCTCCCAAAGTGTTGGGATTAGAGGCATGAACCACCACGCCCAGCCAAAGTTAAACTA 2586
Query 1735 -------------------------------------------------------------------------- 1734
Sbjct 2587 TTATTCTGTGTCAGAATCTGTATTAAATGTGACTTGTCAAGTTATTCAGTCTTTATCCTTAAATAAATGAGTTA 2660
Query 1735 --------- 1734
Sbjct 2661 TCTGAATTC 2669
