Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08719
- Subject:
- NM_001350550.1
- Aligned Length:
- 2706
- Identities:
- 1655
- Gaps:
- 1050
Alignment
Query 1 ATGGTGCCCTGGGTGCGGACGATGGGGCAGAAGCTGAAGCAGCGGCTGCGACTGGACGTGGGACGCGAGATCTG 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 CCGCCAGTACCCGCTGTTCTGCTTCCTGCTGCTCTGTCTCAGCGCCGCCTCCCTGCTTCTTAACAGGTATATTC 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 ATATTTTAATGATCTTCTGGTCATTTGTTGCTGGAGTTGTCACATTCTACTGCTCACTAGGACCTGATTCTCTC 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 TTACCAAATATATTCTTCACAATAAAATACAAACCCAAGCAGTTAGGACTTCAGGAATTATTTCCTCAAGGTCA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 TAGCTGTGCTGTTTGTGGTAAAGTGAAATGTAAACGACATAGGCCTTCTTTGCTACTTGAAAACTACCAGCCAT 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 GGCTAGACCTGAAAATTTCTTCCAAGGTTGATGCATCTCTCTCAGAGGTGGATATTCCATCTATTATAACCAAG 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 AAACTATTAAAAGCAGCAATGAAGCATATAGAAGTGATAGTTAAAGCCAGACAGAAAGTAAAAAATACAGAGTT 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 TTTACAGCAAGCTGCTTTAGAAGAATATGGTCCAGAGCTTCATGTTGCTTTGAGAAGTCGAAGAGATGAATTGC 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 ACTATTTAAGGAAACTTACTGAACTGCTTTTTCCTTATATTTTGCCTCCTAAAGCAACAGACTGCAGATCTCTG 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 ACCTTACTTATAAGAGAGATTCTGTCTGGCTCTGTGTTCCTTCCTTCTTTGGATTTCCTAGCTGATCCAGATAC 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 TGTGAATCATTTGCTTATCATCTTCATAGATGACAGTCCACCTGAAAAAGCAACTGAACCGGCTTCTCCTTTGG 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 TTCCATTCTTGCAGAAATTTGCAGAACCTAGAAATAAAAAGCCATCTGTGCTGAAGTTAGAATTGAAGCAAATC 888
Sbjct 1 -------------------------------------------------------------------------- 0
Query 889 AGAGAGCAACAAGATCTTTTATTTCGTTTTATGAACTTTCTGAAACAAGAAGGCGCAGTGCACGTGTTGCAGTT 962
Sbjct 1 -------------------------------------------------------------------------- 0
Query 963 TTGTTTGACTGTGGAGGAATTTAATGATAGAATTTTACGACCAGAATTATCAAATGATGAAATGCTGTCTCTTC 1036
|||||||||||||
Sbjct 1 -------------------------------------------------------------ATGCTGTCTCTTC 13
Query 1037 ATGAAGAATTGCAGAAGATTTATAAAACATACTGTTTGGATGAAAGTATTGACAAAATTAGATTTGATCCCTTC 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14 ATGAAGAATTGCAGAAGATTTATAAAACATACTGTTTGGATGAAAGTATTGACAAAATTAGATTTGATCCCTTC 87
Query 1111 ATTGTAGAAGAGATTCAAAGAATTGCTGAAGGCCCATACATAGATGTTGTGAAACTTCAAACTATGAGATGTCT 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 88 ATTGTAGAAGAGATTCAAAGAATTGCTGAAGGCCCATACATAGATGTTGTGAAACTTCAAACTATGAGATGTCT 161
Query 1185 TTTTGAAGCATATGAACATGTTCTTTCCCTTTTGGAGAATGTATTTACTCCTATGTTCTGCCATAGTGATGAGT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 TTTTGAAGCATATGAACATGTTCTTTCCCTTTTGGAGAATGTATTTACTCCTATGTTCTGCCATAGTGATGAGT 235
Query 1259 ATTTCAGACAACTTTTAAGAGGTGCAGAATCACCAACACGCAATTCAAAATTGAACA----------------- 1315
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 ATTTCAGACAACTTTTAAGAGGTGCAGAATCACCAACACGCAATTCAAAATTGAACAGAGGTAGCCTAAGTTTG 309
Query 1316 ----------GGAACACACAGAAAAGGGGAGAATCATTTGGAATCAGCAGAATAGGTAGCAAAATTAAAGGAGT 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GATGATTTTCGGAACACACAGAAAAGGGGAGAATCATTTGGAATCAGCAGAATAGGTAGCAAAATTAAAGGAGT 383
Query 1380 ATTCAAAAGTACCACAATGGAGGGAGCTATGTTGCCTAATTATGGTGTAGCTGAAGGTGAAGATGATTTTATTG 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 ATTCAAAAGTACCACAATGGAGGGAGCTATGTTGCCTAATTATGGTGTAGCTGAAGGTGAAGATGATTTTATTG 457
Query 1454 AAGAAGGTATTGTTGTAATGGAAGATGATTCTCCAGTGGAGGCTGTGAGCACACCTAATACTCCCCGAAACCTT 1527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 AAGAAGGTATTGTTGTAATGGAAGATGATTCTCCAGTGGAGGCTGTGAGCACACCTAATACTCCCCGAAACCTT 531
Query 1528 GCTGCATGGAAAATTAGCATTCCATATGTAGACTTTTTTGAGGATCCCTCCTCTGAAAGGAAGGAGAAAAAAGA 1601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GCTGCATGGAAAATTAGCATTCCATATGTAGACTTTTTTGAGGATCCCTCCTCTGAAAGGAAGGAGAAAAAAGA 605
Query 1602 AAGAATTCCTGTGTTTTGTATTGATGTTGAAAGAAATGATAGAAGAGCAGTTGGACACGAGCCTGAACATTGGT 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 AAGAATTCCTGTGTTTTGTATTGATGTTGAAAGAAATGATAGAAGAGCAGTTGGACACGAGCCTGAACATTGGT 679
Query 1676 CTGTCTATAGAAGATATCTTGAATTCTATGTACTTGAATCAAAACTAACAGAATTTCATGGTGCATTTCCTGAT 1749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 CTGTCTATAGAAGATATCTTGAATTCTATGTACTTGAATCAAAACTAACAGAATTTCATGGTGCATTTCCTGAT 753
Query 1750 GCCCAGCTTCCTTCTAAGAGGATCATTGGCCCCAAAAATTATGAATTCTTAAAGTCAAAGAGGGAAGAGTTCCA 1823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 GCCCAGCTTCCTTCTAAGAGGATCATTGGCCCCAAAAATTATGAATTCTTAAAGTCAAAGAGGGAAGAGTTCCA 827
Query 1824 AGAATATCTACAGAAACTTCTGCAGCATCCAGAACTGAGTAATAGTCAACTTCTGGCAGACTTTCTTTCCCCTA 1897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 AGAATATCTACAGAAACTTCTGCAGCATCCAGAACTGAGTAATAGTCAACTTCTGGCAGACTTTCTTTCCCCTA 901
Query 1898 ATGGTGGGGAAACACAATTTCTTGATAAGATACTACCAGATGTAAATCTTGGGAAAATTATAAAATCTGTTCCT 1971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 ATGGTGGGGAAACACAATTTCTTGATAAGATACTACCAGATGTAAATCTTGGGAAAATTATAAAATCTGTTCCT 975
Query 1972 GGAAAACTAATGAAAGAGAAAGGTCAGCATTTGGAACCTTTTATCATGAATTTCATTAATTCTTGTGAGTCTCC 2045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 GGAAAACTAATGAAAGAGAAAGGTCAGCATTTGGAACCTTTTATCATGAATTTCATTAATTCTTGTGAGTCTCC 1049
Query 2046 AAAGCCTAAACCAAGTAGACCAGAACTGACCATTCTCAGCCCTACTTCAGAAAACAACAAGAAGCTTTTCAATG 2119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 AAAGCCTAAACCAAGTAGACCAGAACTGACCATTCTCAGCCCTACTTCAGAAAACAACAAGAAGCTTTTCAATG 1123
Query 2120 ATCTGTTTAAAAATAATGCAAACCGTGCTGAAAATACAGAGAGAAAGCAAAATCAGAATTATTTTATGGAGGTG 2193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 ATCTGTTTAAAAATAATGCAAACCGTGCTGAAAATACAGAGAGAAAGCAAAATCAGAATTATTTTATGGAGGTG 1197
Query 2194 ATGACTGTAGAAGGAGTCTATGATTACCTGATGTATGTAGGACGGGTAGTTTTCCAGGTTCCTGACTGGCTTCA 2267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ATGACTGTAGAAGGAGTCTATGATTACCTGATGTATGTAGGACGGGTAGTTTTCCAGGTTCCTGACTGGCTTCA 1271
Query 2268 TCATCTCTTAATGGGAACTCGAATCCTCTTTAAAAACACCCTGGAAATGTATACTGATTACTATCTTCAGTGTA 2341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 TCATCTCTTAATGGGAACTCGAATCCTCTTTAAAAACACCCTGGAAATGTATACTGATTACTATCTTCAGTGTA 1345
Query 2342 AACTAGAACAGCTATTTCAGGAGCACCGTTTGGTCTCACTCATAACACTTCTCAGAGATGCTATATTCTGTGAA 2415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 AACTAGAACAGCTATTTCAGGAGCACCGTTTGGTCTCACTCATAACACTTCTCAGAGATGCTATATTCTGTGAA 1419
Query 2416 AACACTGAACCTCGCTCTCTCCAAGATAAGCAAAAAGGAGCAAAACAGACTTTTGAAGAAATGATGAATTACAT 2489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 AACACTGAACCTCGCTCTCTCCAAGATAAGCAAAAAGGAGCAAAACAGACTTTTGAAGAAATGATGAATTACAT 1493
Query 2490 TCCAGATCTGTTAGTCAAGTGTATTGGTGAAGAAACCAAGTATGAAAGCATCAGACTTCTGTTTGATGGCTTAC 2563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TCCAGATCTGTTAGTCAAGTGTATTGGTGAAGAAACCAAGTATGAAAGCATCAGACTTCTGTTTGATGGCTTAC 1567
Query 2564 AGCAACCAGTACTCAACAAGCAGCTGACTTATGTTTTATTGGACATTGTGATACAGGAACTGTTTCCAGAGCTC 2637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1568 AGCAACCAGTACTCAACAAGCAGCTGACTTATGTTTTATTGGACATTGTGATACAGGAACTGTTTCCAGAGCTC 1641
Query 2638 AATAAGGTACAAAAGGAAGTTACCTCTGTGACATTTTGGATG 2679
||||||||||||||||||||||||||||||||||.|||||||
Sbjct 1642 AATAAGGTACAAAAGGAAGTTACCTCTGTGACATCTTGGATG 1683
