Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_08776
Subject:
XR_001738872.1
Aligned Length:
3338
Identities:
2806
Gaps:
531

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACACTGTCCTCTCACAGAACAAGAAGGTATCTGGTCTACAAGAACTCGAGGCCTCACTGAAACGGAAAGCAAAT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACAAAGAAACTTTATTTTAAAAACATGTCTTGGTCTCCCAAGAAGAGGGCAATTGGATTGCTCAGCCAGAATGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGAGTAGTTTTACAGAAAAAAGAGGACAATATTGGGATCACCTTTGACCTTTCCATTTGGAAATAATATTTTCT  222

Query    1  ---------------------------------------ATGAATTTCATAAAGGACAATGGCCGAGCCCTTAT  35
                                                   |||||||||||||||||||||.|||||||||||||
Sbjct  223  ATTGTGTTATAGAAAGGTGGGAAGCTTTCATCCAGAACAATGAATTTCATAAAGGACAATAGCCGAGCCCTTAT  296

Query   36  TCAAAGAATGGGAATGACTGTTATAAAGCAAATCACAGATGACCTATTTGTATGGAATGTTCTGAATCGCGAAG  109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TCAAAGAATGGGAATGACTGTTATAAAGCAAATCACAGATGACCTATTTGTATGGAATGTTCTGAATCGCGAAG  370

Query  110  AAGTAAACATCATTTGCTGCGAGAAGGTGGAGCAGGATGCTGCTAGAGGGATCATTCACATGATTTTGAAAAAG  183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AAGTAAACATCATTTGCTGCGAGAAGGTGGAGCAGGATGCTGCTAGAGGGATCATTCACATGATTTTGAAAAAG  444

Query  184  GGTTCAGAGTCCTGTAACCTCTTTCTTAAATCCCTTAAGGAGTGGAACTATCCTCTATTTCAGGACTTGAATGG  257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GGTTCAGAGTCCTGTAACCTCTTTCTTAAATCCCTTAAGGAGTGGAACTATCCTCTATTTCAGGACTTGAATGG  518

Query  258  ACAAAGTCTTTTTCATCAGACATCAGAAGGAGACTTGGACGATTTGGCTCAGGATTTAAAGGACTTGTACCATA  331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  ACAAAGTCTTTTTCATCAGACATCAGAAGGAGACTTGGACGATTTGGCTCAGGATTTAAAGGACTTGTACCATA  592

Query  332  CCCCATCTTTTCTGAACTTTTATCCCCTTGGTGAAGATATTGACATTATTTTTAACTTGAAAAGCACCTTCACA  405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CCCCATCTTTTCTGAACTTTTATCCCCTTGGTGAAGATATTGACATTATTTTTAACTTGAAAAGCACCTTCACA  666

Query  406  GAACCTGTCCTGTGGAGGAAGGACCAACACCATCACCGCGTGGAGCAGCTGACCCTGAATGGCCTCCTGCAGGC  479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GAACCTGTCCTGTGGAGGAAGGACCAACACCATCACCGCGTGGAGCAGCTGACCCTGAATGGCCTCCTGCAGGC  740

Query  480  TCTTCAGAGCCCCTGCATCATTGAAGGGGAATCTGGCAAAGGCAAGTCCACTCTGCTGCAGCGAATTGCCATGC  553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TCTTCAGAGCCCCTGCATCATTGAAGGGGAATCTGGCAAAGGCAAGTCCACTCTGCTGCAGCGAATTGCCATGC  814

Query  554  TCTGGGGCTCCGGAAAGTGCAAGGCTCTGACCAAGTTCAAATTCGTCTTCTTCCTCCGTCTCAGCAGGGCCCAG  627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TCTGGGGCTCCGGAAAGTGCAAGGCTCTGACCAAGTTCAAATTCGTCTTCTTCCTCCGTCTCAGCAGGGCCCAG  888

Query  628  GGTGGACTTTTTGAAACCCTCTGTGATCAACTCCTGGATATACCTGGCACAATCAGGAAGCAGACATTCATGGC  701
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GGTGGACTTTTTGAAACCCTCTGTGATCAACTCCTGGATATACCTGGCACAATCAGGAAGCAGACATTCATGGC  962

Query  702  CATGCTGCTGAAGCTGCGGCAGAGGGTTCTTTTCCTTCTTGATGGCTACAATGAATTCAAGCCCCAGAACTGCC  775
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CATGCTGCTGAAGCTGCGGCAGAGGGTTCTTTTCCTTCTTGATGGCTACAATGAATTCAAGCCCCAGAACTGCC  1036

Query  776  CAGAAATCGAAGCCCTGATAAAGGAAAACCACCGCTTCAAGAACATGGTCATCGTCACCACTACCACTGAGTGC  849
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CAGAAATCGAAGCCCTGATAAAGGAAAACCACCGCTTCAAGAACATGGTCATCGTCACCACTACCACTGAGTGC  1110

Query  850  CTGAGGCACATACGGCAGTTTGGTGCCCTGACTGCTGAGGTGGGGGATATGACAGAAGACAGCGCCCAGGCTCT  923
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CTGAGGCACATACGGCAGTTTGGTGCCCTGACTGCTGAGGTGGGGGATATGACAGAAGACAGCGCCCAGGCTCT  1184

Query  924  CATCCGAGAAGTGCTGATCAAGGAGCTTGCTGAAGGCTTGTTGCTCCAAATTCAGAAATCCAGGTGCTTGAGGA  997
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CATCCGAGAAGTGCTGATCAAGGAGCTTGCTGAAGGCTTGTTGCTCCAAATTCAGAAATCCAGGTGCTTGAGGA  1258

Query  998  ATCTCATGAAGACCCCTCTCTTTGTGGTCATCACTTGTGCAATCCAGATGGGTGAAAGTGAGTTCCACTCTCAC  1071
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  ATCTCATGAAGACCCCTCTCTTTGTGGTCATCACTTGTGCAATCCAGATGGGTGAAAGTGAGTTCCACTCTCAC  1332

Query 1072  ACACAAACAACGCTGTTCCATACCTTCTATGATCTGTTGATACAGAAAAACAAACACAAACATAAAGGTGTGGC  1145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  ACACAAACAACGCTGTTCCATACCTTCTATGATCTGTTGATACAGAAAAACAAACACAAACATAAAGGTGTGGC  1406

Query 1146  TGCAAGTGACTTCATTCGGAGCCTGGACCACTGTGGAGACCTAGCTCTGGAGGGTGTGTTCTCCCACAAGTTTG  1219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TGCAAGTGACTTCATTCGGAGCCTGGACCACTGTGGAGACCTAGCTCTGGAGGGTGTGTTCTCCCACAAGTTTG  1480

Query 1220  ATTTCGAACTGCAGGATGTGTCCAGCGTGAATGAGGATGTCCTGCTGACAACTGGGCTCCTCTGTAAATATACA  1293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  ATTTCGAACTGCAGGATGTGTCCAGCGTGAATGAGGATGTCCTGCTGACAACTGGGCTCCTCTGTAAATATACA  1554

Query 1294  GCTCAAAGGTTCAAGCCAAAGTATAAATTCTTTCACAAGTCATTCCAGGAGTACACAGCAGGACGAAGACTCAG  1367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GCTCAAAGGTTCAAGCCAAAGTATAAATTCTTTCACAAGTCATTCCAGGAGTACACAGCAGGACGAAGACTCAG  1628

Query 1368  CAGTTTATTGACGTCTCATGAGCCAGAGGAGGTGACCAAGGGGAATGGTTACTTGCAGAAAATGGTTTCCATTT  1441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  CAGTTTATTGACGTCTCATGAGCCAGAGGAGGTGACCAAGGGGAATGGTTACTTGCAGAAAATGGTTTCCATTT  1702

Query 1442  CGGACATTACATCCACTTATAGCAGCCTGCTCCGGTACACCTGTGGGTCATCTGTGGAAGCCACCAGGGCTGTT  1515
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  CGGACATTACATCCACTTATAGCAGCCTGCTCCGGTACACCTGTGGGTCATCTGTGGAAGCCACCAGGGCTGTT  1776

Query 1516  ATGAAGCACCTCGCAGCAGTGTATCAACACGGCTGCCTTCTCGGACTTTCCATCGCCAAGAGGCCTCTCTGGAG  1589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  ATGAAGCACCTCGCAGCAGTGTATCAACACGGCTGCCTTCTCGGACTTTCCATCGCCAAGAGGCCTCTCTGGAG  1850

Query 1590  ACAGGAATCTTTGCAAAGTGTGAAAAACACCACTGAGCAAGAAATTCTGAAAGCCATAAACATCAATTCCTTTG  1663
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  ACAGGAATCTTTGCAAAGTGTGAAAAACACCACTGAGCAAGAAATTCTGAAAGCCATAAACATCAATTCCTTTG  1924

Query 1664  TAGAGTGTGGCATCCATTTATATCAAGAGAGTACATCCAAATCAGCCCTGAGCCAAGAATTTGAAGCTTTCTTT  1737
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  TAGAGTGTGGCATCCATTTATATCAAGAGAGTACATCCAAATCAGCCCTGAGCCAAGAATTTGAAGCTTTCTTT  1998

Query 1738  CAAGGTAAAAGCTTATATATCAACTCAGGGAACATCCCCGATTACTTATTTGACTTCTTTGAACATTTGCCCAA  1811
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  CAAGGTAAAAGCTTATATATCAACTCAGGGAACATCCCCGATTACTTATTTGACTTCTTTGAACATTTGCCCAA  2072

Query 1812  TTGTGCAAGTGCCCTGGACTTCATTAAACTGGACTTTTATGGGGGAGCTATGGCTTCATGGGAAAAGGCTGCAG  1885
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  TTGTGCAAGTGCCCTGGACTTCATTAAACTGGACTTTTATGGGGGAGCTATGGCTTCATGGGAAAAGGCTGCAG  2146

Query 1886  AAGACACAGGTGGAATCCACATGGAAGAGGCCCCAGAAACCTACATTCCCAGCAGGGCTGTATCTTTGTTCTTC  1959
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  AAGACACAGGTGGAATCCACATGGAAGAGGCCCCAGAAACCTACATTCCCAGCAGGGCTGTATCTTTGTTCTTC  2220

Query 1960  AACTGGAAGCAGGAATTCAGGACTCTGGAGGTCACACTCCGGGATTTCAGCAAGTTGAATAAGCAAGATATCAG  2033
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  AACTGGAAGCAGGAATTCAGGACTCTGGAGGTCACACTCCGGGATTTCAGCAAGTTGAATAAGCAAGATATCAG  2294

Query 2034  ATATCTGGGGAAAATATTCAGCTCTGCCACAAGCCTCAGGCTGCAAATAAAGAGATGTGCTGGTGTGGCTGGAA  2107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  ATATCTGGGGAAAATATTCAGCTCTGCCACAAGCCTCAGGCTGCAAATAAAGAGATGTGCTGGTGTGGCTGGAA  2368

Query 2108  GCCTCAGTTTGGTCCTCAGCACCTGTAAGAACATTTATTCTCTCATGGTGGAAGCCAGTCCCCTCACCATAGAA  2181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  GCCTCAGTTTGGTCCTCAGCACCTGTAAGAACATTTATTCTCTCATGGTGGAAGCCAGTCCCCTCACCATAGAA  2442

Query 2182  GATGAGAGGCACATCACATCTGTAACAAACCTGAAAACCTTGAGTATTCATGACCTACAGAATCAACGGCTGCC  2255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  GATGAGAGGCACATCACATCTGTAACAAACCTGAAAACCTTGAGTATTCATGACCTACAGAATCAACGGCTGCC  2516

Query 2256  GG-----GTGGTCTGACTGACAGCTTGGGTAACTTGAAGAACCTTACAAAGCTCATAATGGATAACATAAAGAT  2324
            ||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  GGGTATTGTGGTCTGACTGACAGCTTGGGTAACTTGAAGAACCTTACAAAGCTCATAATGGATAACATAAAGAT  2590

Query 2325  GAATGAAGAAGATGCTATAAAACTAGCTGAAGGCCTGAAAAACCTGAAGAAGATGTGTTTATTTCATTTGACCC  2398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  GAATGAAGAAGATGCTATAAAACTAGCTGAAGGCCTGAAAAACCTGAAGAAGATGTGTTTATTTCATTTGACCC  2664

Query 2399  ACTTGTCTGACATTGGAGAGGGAATGGATTACATAGTCAAGTCTCTGTCAAGTGAACCCTGTGACCTTGAAGAA  2472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  ACTTGTCTGACATTGGAGAGGGAATGGATTACATAGTCAAGTCTCTGTCAAGTGAACCCTGTGACCTTGAAGAA  2738

Query 2473  ATTCAATTAGTCTCCTGCTGCTTGTCTGCAAATGCAGTGAAAATCCTAGCTCAGAATCTTCACAATTTGGTCAA  2546
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739  ATTCAATTAGTCTCCTGCTGCTTGTCTGCAAATGCAGTGAAAATCCTAGCTCAGAATCTTCACAATTTGGTCAA  2812

Query 2547  ACTGAGCATTCTTGATTTATCAGAAAATTACCTGGAAAAAGATGGAAATGAAGCTCTTCATGAACTGATCGACA  2620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813  ACTGAGCATTCTTGATTTATCAGAAAATTACCTGGAAAAAGATGGAAATGAAGCTCTTCATGAACTGATCGACA  2886

Query 2621  GGATGAACGTGCTAGAACAGCTCACCGCACTGATGCTGCCCTGGGGCTGTGACGTGCAAGGCAGCCTGAGCAGC  2694
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887  GGATGAACGTGCTAGAACAGCTCACCGCACTGATGCTGCCCTGGGGCTGTGACGTGCAAGGCAGCCTGAGCAGC  2960

Query 2695  CTGTTGAAACATTTGGAGGAGGTCCCACAACTCGTCAAGCTTGGGTTGAAAAACTGGAGACTCACAGATACAGA  2768
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961  CTGTTGAAACATTTGGAGGAGGTCCCACAACTCGTCAAGCTTGGGTTGAAAAACTGGAGACTCACAGATACAGA  3034

Query 2769  GATTAGAATTTTAGGTGCATTTTTTGGAAAGAACCCTCTGAAAAACTTCCAGCAGTTGAATTTGGCGGGAAATC  2842
            |||||||||||||||||||||||||||||||||||||||                                   
Sbjct 3035  GATTAGAATTTTAGGTGCATTTTTTGGAAAGAACCCTCT-----------------------------------  3073

Query 2843  GTGTGAGCAGTGATGGATGGCTTGCCTTCATGGGTGTATTTGAGAATCTTAAGCAATTAGTGTTTTTTGACTTT  2916
                                                                                      
Sbjct 3074  --------------------------------------------------------------------------  3073

Query 2917  AGTACTAAAGAATTTCTACCTGATCCAGCATTAGTCAGAAAACTTAGCCAAGTGTTATCCAAGTTAACTTTTCT  2990
                                                                                      
Sbjct 3074  --------------------------------------------------------------------------  3073

Query 2991  GCAAGAAGCTAGGCTTGTTGGGTGGCAATTTGATGATGATGATCTCAGTGTTATTACAGGTGCTTTTAAACTAG  3064
                                                                                      
Sbjct 3074  --------------------------------------------------------------------------  3073

Query 3065  TAACCGCT  3072
                    
Sbjct 3074  --------  3073

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.