Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08827
- Subject:
- NR_037638.3
- Aligned Length:
- 5138
- Identities:
- 2069
- Gaps:
- 3065
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAACTGAAGCAAGCTGTGCCCAGGTCCCTGTAACAGCAGGTGGCTTTCTGACATCAGCAGAGACTGGTGCTTTT 74
Query 1 ---------------------------------------------------ATGGAGCTGAGGAGTACAGCAGC 23
|||||||||||||||||||||||
Sbjct 75 TCCCAGGTACAAAGGACCTCCAGACCAGAGCCAGCCAGCAGCAAAAAGAGCATGGAGCTGAGGAGTACAGCAGC 148
Query 24 CCCCAGAGCTGAGGGCTACAGCAACGTGGGCTTCCAGAATGAAGAAAACTTTCTTGAGAACGAGAACACATCAG 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CCCCAGAGCTGAGGGCTACAGCAACGTGGGCTTCCAGAATGAAGAAAACTTTCTTGAGAACGAGAACACATCAG 222
Query 98 GAAACAACTCAATAAGAAGCAGAGCTGTGCAAAGCAGGGAGCACACAAACACCAA------------------- 152
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GAAACAACTCAATAAGAAGCAGAGCTGTGCAAAGCAGGGAGCACACAAACACCAAACAGAGAATCAAAGGCCAC 296
Query 153 -------------------------------------------------------------------------- 152
Sbjct 297 ATTGGATATGACAGAAGACAAGTGCTGAGATTTGACATTATACTTCTTAGAGCACACTCAAACTGCTCCACCTC 370
Query 153 -------------------------------------------------------------------------- 152
Sbjct 371 CATCTATTTCCTCCCCCACCAGCTTCTGTACCATTGGTTACAAGAGCCAGGCTTATTATTTGAGACATTATTGG 444
Query 153 ---------ACAGGATGAAGAACAGGTCACAGTTGAGCAGGATTCTCCAAGAAACAGAGAACACATGGAGGATG 217
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AGACTGGAGACAGGATGAAGAACAGGTCACAGTTGAGCAGGATTCTCCAAGAAACAGAGAACACATGGAGGATG 518
Query 218 ATGATGAGGAGATGCAACAAAAAGGGTGTTTGGAAAGGAGGTATGACACGGTATGTGGTTTCTGTAGGAAACAC 291
|||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 519 ATGATGAGGAGATGCAACAAAAAGGGTGTTTGGAAAGGAGGTATGACACAGTATGTGGTTTCTGTAGGAAACAC 592
Query 292 AAAACAACTCTTCGGCACATCATCTGGGGCATTTTATTAGCAGGTTATCTGGTTATGGTGATTTCGGCCTGTGT 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AAAACAACTCTTCGGCACATCATCTGGGGCATTTTATTAGCAGGTTATCTGGTTATGGTGATTTCGGCCTGTGT 666
Query 366 GCTGAACTTTCACAGAGCCCTTCCTCTTTTTGTGATCACCGTGGCTGCCATCTTCTTTGTTGTCTGGGATCACC 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GCTGAACTTTCACAGAGCCCTTCCTCTTTTTGTGATCACCGTGGCTGCCATCTTCTTTGTTGTCTGGGATCACC 740
Query 440 TGATGGCCAAATACGAACATCGAATTGATGAGATGCTGTCTCCTGGCAGAAGGCTTCTAAACAGCCATTGGTTC 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TGATGGCCAAATACGAACATCGAATTGATGAGATGCTGTCTCCTGGCAGAAGGCTTCTAAACAGCCATTGGTTC 814
Query 514 TGGCTGAAGTGGGTGATCTGGAGCTCCCTGGTCCTAGCAGTTATTTTCTGGTTGGCCTTTGACACTGCCAAATT 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TGGCTGAAGTGGGTGATCTGGAGCTCCCTGGTCCTAGCAGTTATTTTCTGGTTGGCCTTTGACACTGCCAAATT 888
Query 588 GGGTCAACAGCAGCTGGTGTCCTTCGGTGGGCTCATAATGTACATTGTCCTGTTATTTCTATTCTCCAAGTACC 661
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct 889 GGGTCAACAGCAGCTGGTGTCCTTCGGTGGGCTCATAATGTACATTGTCCTGTTATTTCTATTTTCCAAGTACC 962
Query 662 CAACCAGAGTTTACTGGAGACCTGTCTTATGGGGAATCGGGCTACAGTTTCTTCTTGGGCTCTTGATTCTAAGG 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CAACCAGAGTTTACTGGAGACCTGTCTTATGGGGAATCGGGCTACAGTTTCTTCTTGGGCTCTTGATTCTAAGG 1036
Query 736 ACTGACCCTGGATTTATAGCTTTTGATTGGTTGGGCAGACAAGTTCAGACTTTTCTGGAGTACACAGATGCTGG 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ACTGACCCTGGATTTATAGCTTTTGATTGGTTGGGCAGACAAGTTCAGACTTTTCTGGAGTACACAGATGCTGG 1110
Query 810 TGCTTCATTTGTCTTTGGTGAGAAATACAAAGACCACTTCTTTGCATTTAAGGTCCTACCGATCGTGGTTTTCT 883
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 1111 TGCTTCATTTGTCTTTGGTGAGAAATACAAAGACCACTTCTTTGCATTTAAGGTCCTGCCGATCGTGGTTTTCT 1184
Query 884 TCAGCACTGTGATGTCCATGCTGTACTACCTGGGACTGATGCAGTGGATTATTAGAAAGGTTGGATGGATCATG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TCAGCACTGTGATGTCCATGCTGTACTACCTGGGACTGATGCAGTGGATTATTAGAAAGGTTGGATGGATCATG 1258
Query 958 CTAGTTACTACGGGATCATCTCCTATTGAATCTGTAGTTGCTTCTGGCAATATATTTGTTGGACAAACGGAGTC 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CTAGTTACTACGGGATCATCTCCTATTGAATCTGTAGTTGCTTCTGGCAATATATTTGTTGGACAAACGGAGTC 1332
Query 1032 TCCACTGCTGGTCCGACCATATTTACCTTACATCACCAAGTCTGAACTCCACGCCATCATGACCGCCGGGTTCT 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TCCACTGCTGGTCCGACCATATTTACCTTACATCACCAAGTCTGAACTCCACGCCATCATGACCGCCGGGTTCT 1406
Query 1106 CTACCATTGCTGGAAGCGTGCTAGGTGCATACATTTCTTTTGGGGTTCCATCCTCCCACTTGTTAACAGCGTCA 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 CTACCATTGCTGGAAGCGTGCTAGGTGCATACATTTCTTTTGGGGTTCCATCCTCCCACTTGTTAACAGCGTCA 1480
Query 1180 GTTATGTCAGCACCTGCGTCATTGGCTGCTGCTAAACTCTTTTGGCCTGAGACAGAAAAACCTAAAATAACCCT 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GTTATGTCAGCACCTGCGTCATTGGCTGCTGCTAAACTCTTTTGGCCTGAGACAGAAAAACCTAAAATAACCCT 1554
Query 1254 CAAGAATGCCATGAAAATGGAAAGTGGTGATTCAGGGAATCTTCTAGAAGCTGCAACACAGGGAGCATCCTCCT 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CAAGAATGCCATGAAAATGGAAAGTGGTGATTCAGGGAATCTTCTAGAAGCTGCAACACAGGGAGCATCCTCCT 1628
Query 1328 CCATCTCCCTGGTGGCCAACATCGCTGTGAATCTGATTGCCTTCCTGGCCCTGCTGTCTTTTATGAATTCAGCC 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CCATCTCCCTGGTGGCCAACATCGCTGTGAATCTGATTGCCTTCCTGGCCCTGCTGTCTTTTATGAATTCAGCC 1702
Query 1402 CTGTCCTGGTTTGGAAACATGTTTGACTACCCACAGCTGAGTTTTGAGCTAATCTGCTCCTACATCTTCATGCC 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CTGTCCTGGTTTGGAAACATGTTTGACTACCCACAGCTGAGTTTTGAGCTAATCTGCTCCTACATCTTCATGCC 1776
Query 1476 CTTTTCCTTCATGATGGGAGTGGAATGGCAGGACAGCTTTATGGTTGCCAGACTCATAGGTTATAAGACCTTCT 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 CTTTTCCTTCATGATGGGAGTGGAATGGCAGGACAGCTTTATGGTTGCCAGACTCATAGGTTATAAGACCTTCT 1850
Query 1550 TCAATGAATTTGTGGCTTATGAGCACCTCTCAAAATGGATCCACTTGAGGAAAGAAGGTGGACCCAAATTTGTA 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TCAATGAATTTGTGGCTTATGAGCACCTCTCAAAATGGATCCACTTGAGGAAAGAAGGTGGACCCAAATTTGTA 1924
Query 1624 AACGGTGTGCAGCAATATATATCAATTCGTTCTGAGATAATCGCCACTTACGCTCTCTGTGGTTTTGCCAATAT 1697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 AACGGTGTGCAGCAATATATATCAATTCGTTCTGAGATAATCGCCACTTACGCTCTCTGTGGTTTTGCCAATAT 1998
Query 1698 CGGGTCCCTAGGAATCGTGATCGGCGGACTCACATCCATGACTCCTTCCAGAAAGCGTGATATCGCCTCGGGGG 1771
||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 1999 CGGGTCCCTAGGAATCGTGATCGGCGGACTCACATCCATGGCTCCTTCCAGAAAGCGTGATATCGCCTCGGGGG 2072
Query 1772 CAGTGAGAGCTCTGATTGCGGGGACCGTGGCCTGCTTCATGACAGCCTGCATCGCAGGCATACTCTCCAGCACT 1845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 CAGTGAGAGCTCTGATTGCGGGGACCGTGGCCTGCTTCATGACAGCCTGCATCGCAGGCATACTCTCCAGCACT 2146
Query 1846 CCTGTGGACATCAACTGCCATCACGTTTTAGAGAATGCCTTCAACTCCACTTTCCCTGGAAACACAACCAAGGT 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 CCTGTGGACATCAACTGCCATCACGTTTTAGAGAATGCCTTCAACTCCACTTTCCCTGGAAACACAACCAAGGT 2220
Query 1920 GATAGCTTGTTGCCAAAGTCTGTTGAGCAGCACTGTTGCCAAGGGTCCTGGTGAAGTCATCCCAGGAGGAAACC 1993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 GATAGCTTGTTGCCAAAGTCTGTTGAGCAGCACTGTTGCCAAGGGTCCTGGTGAAGTCATCCCAGGAGGAAACC 2294
Query 1994 ACAGTCTGTATTCTTTGAAGGGCTGCTGCACATTGTTGAATCCATCGACCTTTAACTGCAATGGGATCTCTAAT 2067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 ACAGTCTGTATTCTTTGAAGGGCTGCTGCACATTGTTGAATCCATCGACCTTTAACTGCAATGGGATCTCTAAT 2368
Query 2068 ACATTT-------------------------------------------------------------------- 2073
||||||
Sbjct 2369 ACATTTTGAGGTCAGCCACTTCTCCAGTGGAACTCTGAAGTACAGATGCTGAATTTTCTGCTTTGGAAAGAAAA 2442
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 2443 AAAAAAGAAGCTATTGTCCACAGATTGATGCTTCCATAATGGAATCAGCTTTAATTGCAAGGAATGAAGAAAAA 2516
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 2517 CAAGAGTGGACCTTCAAAGCTACAACATTTTCCTCCTCCCCTCCCTCCCCACCAGCCCCTTCCCCACCAAGAAC 2590
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 2591 TGCTATGATGTCCCAAAGTGAGGTGTTGTTGATTCCAGTCTCAATGGGATTTTCTGACTTTAATGTTTGCAAGG 2664
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 2665 CATTTCACCAGAATACAGCTATAAACGGCCGCTCCCAACAACTGGGCTCTGACTCACCCACACCCACTTAGTGT 2738
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 2739 CCACTAAGTAGTCCAGGGTGACTCAGTTTAAGCACATCTCAGGTGAGGTCACTCTGCATATACCTTGGCTTACC 2812
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 2813 TGAAATAGCCTGAACTTGAATCTCACATAAGGGAAAACTAGTCATCAATCACCAACTCATTGACTACCCTCAGG 2886
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 2887 AAGTCCTGCAGAAATCAAGAGTCCTTGAGGAGAACACGTGGATCATACCAAAACCAGGGTTTAAATCCATTCTG 2960
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 2961 CTTAAGAGTTCTATCAGTCAGTTTAACCATAAATTACGCTACAGAAACAAACAACCCAAAAACCTCAGTGGCTT 3034
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 3035 ACAGATTTATTTTTCACTCACATGTTTGTAATGATCCATCTTGGTTGTAATCCATATTGCTTCAGCACCCAGTC 3108
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 3109 TAAAGGAGCAGCCTCTAAGGGGGGCATGTTGGTCTTAAGAGGGAAAAGAAAGGTGGGAACCACATGATGGCTCT 3182
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 3183 TTCATCTTCCGCTAGGAAATGATACCCTTTACTTCCATGACATTCCATTAGCCAAAACAAGTCCTGTGACAGGC 3256
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 3257 ACGATGTCAGTCACCACAGTTAAATTATCCTGTCATAGGGAGGGATAGTGAATATTTTGCAGAAGTAATATGAT 3330
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 3331 ACACCATAAGGGTACATAATATCCATGTCTCCCTTCAAGGAGCCATCCTGTTGTAGGCCATAACGGTAGGCCTA 3404
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 3405 TTCATCTGCACATTTGGTAATGTATTCCTGGTGACAAAGCAGCTACTCTTCAATCAAAAGCCGTGTAAGAAGCA 3478
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 3479 GTTGAGGAAAAAAAGTCCTGGTTGAGCTCTGAAAACCTTGCGTTGATAATTTCATTGACCAGGATGGCATCAGT 3552
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 3553 ATCAAACTTGAAGAATGGGTGTCAGTGTCTAAGAAAAAGATTCCAGAGACAATGGTGGTGTGCTCTTTAACGAA 3626
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 3627 ATGCCCATCACCACTGCTCTTAATAGCATGAAGACCACATGCTGTGAGAAAACACAAACATCAATTACCAAGTC 3700
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 3701 AAGAAACAGACACTGAATGTGAAAAAGGTTTTGAAATACCTTAAGTAATTTATTTTGTTTCTATTTTTCCTTCT 3774
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 3775 GTTTGTGTACAAGAGTAATTTAAAAGAAAAAGCTATGTGAAAATAGTTGGGGTTTTTTGTGTGTTTTGTTTTTT 3848
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 3849 GTGGTGGTGAAGGAGGAGGCCTAATGTCCAGAGGACTGTTTATCCCTGAAGTATGATATACTAAAATATTTCTT 3922
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 3923 ATTATTTGTATCAATTTTCCTTGGAGCTCAATGTGCCCTTGCAGTCTTCAGACTTTATTTTAGGAAAATATATT 3996
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 3997 TGCATGTTTTCCCCCCATTCTCAATGTTTGGTGTCCTGGTTCATCATACCCCACAGAATGTTATGTTTATGTAT 4070
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 4071 CATACCATTCCTCTGTGGACATGCATTTACTTTGTTTACAGGTTTTGGTTTGGGGGTTCTCTTTTTCCTACTCT 4144
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 4145 GGACAGTGCATGTACATTTACTTTGCATGCTGGTGCTTTTTTTTCTATAGCAATAGTGTCTGATAGACATATGC 4218
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 4219 AAGTCACATGTAATTTAAGATCTAGTAGCCACGCTAAAAAACAAGTAAAATTAATTTTAATATATTTAACTCAA 4292
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 4293 TACATTGGAGATATTATTTCAGTAAGATATTTTTCATTCTTATGAAACTAAGTCTGTCTGGTTTGCATATCTCA 4366
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 4367 GTTGAGACACTAAAGTTTTACTGATAATACTTAATCCATGTTTAGATTTCATAAAATCTAAATTTGCAAAGTAA 4440
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 4441 ATTTACATACCCATGTTGGTCTAAATGTGCTTAAAAGTTTTCCAATAACTGAAATGAGTATCAGTTTTAAATTT 4514
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 4515 AAAAATTTGTTACTTGGTTACTCCATATTTCAGGTATTAGTGGCTACCATATTGGTCAGAGCAGATTCATAGGA 4588
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 4589 TGATTTCCCAGGTTTGAAGTGTGTGTATATTTCTGGTATTATAAGATGTCAGACTGGTTTTTGGAGAAATATGT 4662
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 4663 TGTCTTAATTTTTACCTGCTTTGATATGACCTTTCTGTGTGTACGTGTGACATTTCTTTATAAATGCAACATGT 4736
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 4737 TCACATAGGTCCTACGTTGATTCCTTATTAATGCTGTGCATCCTTGAACTGAGAAAGGGGGTGTTATTCCTGAG 4810
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 4811 CTATATTATAAGAGGATAGTAAAGGCCAAGGACCAGGAAAATGAGCTGGTTAAGCCTCTTGAGCTTGTTACCCC 4884
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 4885 CAGAAACCTCACCAATACCCTGTGAACGTCGTAAGTGGCCCTTCTCCCAGTGAAACAACCTAATGGAGGTTTTT 4958
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 4959 GGTGCATGGTGATGTTTTTATTCCTCTTTAGTAGACATAGAAGCTGGAGGCTGCTTGTCTTCCCCAGTTTCTCC 5032
Query 2074 -------------------------------------------------------------------------- 2073
Sbjct 5033 TTCACCCATGTACATATAGTGGGCAAAGATGGCATGCCTATGTTTTTCAGCTGTTTGAGCCCGCTCACTGTTGA 5106
Query 2074 -------------------------------- 2073
Sbjct 5107 CAGATTGTTGCTGTTGGTCTGTGCTCCCCAAC 5138
