Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_08866
Subject:
NR_135106.1
Aligned Length:
4272
Identities:
1220
Gaps:
3051

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAAGGTGGGAGTCAATCATTTTGACAAGTCTCCTGAAAGGAACAGCTAGCAGGAACTGAAACCTTTTTCCATTT  74

Query    1  ---------------------------------------------ATGATGTGCTCACGGGTGCCCTCTGAACA  29
                                                         |||||||||||||||||||||||||||||
Sbjct   75  GGTCTCGTGGCAAAGGCAGAGATTGCTCCAGCAGCTCCACACAAAATGATGTGCTCACGGGTGCCCTCTGAACA  148

Query   30  GTCTTCTGGTACCTCTCTCTTGCCTAAAGACGGTGCCCCATTTTCTTGGGATTCCTTGGATGAGGATGGATTGG  103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GTCTTCTGGTACCTCTCTCTTGCCTAAAGACGGTGCCCCATTTTCTTGGGATTCCTTGGATGAGGATGGATTGG  222

Query  104  ATGACTCCTTGCTGGAGCTGTCAGAGGGAGAAGAAGATGATGGTGATGTAAATTACACAGAGGAAGAGATTGAT  177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  ATGACTCCTTGCTGGAGCTGTCAGAGGGAGAAGAAGATGATGGTGATGTAAATTACACAGAGGAAGAGATTGAT  296

Query  178  GCACTGTTGAAGGAAGATGACCCATCATATGAGCAGTCTTCTGGGGAAGATGATGGTGGGCATGTTGAGAAGGG  251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GCACTGTTGAAGGAAGATGACCCATCATATGAGCAGTCTTCTGGGGAAGATGATGGTGGGCATGTTGAGAAGGG  370

Query  252  AGAAAGAGGGAGTCAAATTCTACTTGATACTCCCCGAGAGAAAAATTCATCGTACAGCCTGGGACCAGTAGCTG  325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGAAAGAGGGAGTCAAATTCTACTTGATACTCCCCGAGAGAAAAATTCATCGTACAGCCTGGGACCAGTAGCTG  444

Query  326  AGACTCCTGACCTCTTCAAACTACCTCAGCTAAGTACATCAAGTGGTCATGGACCAGCTCATACTAAACCATTA  399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AGACTCCTGACCTCTTCAAACTACCTCAGCTAAGTACATCAAGTGGTCATGGACCAGCTCATACTAAACCATTA  518

Query  400  AACAGACGCTCTGTACTAGAAAAGAATCTTATAAAAGTAACTGTTGCACCATTTAATCCAACAGTTTGTGATGC  473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AACAGACGCTCTGTACTAGAAAAGAATCTTATAAAAGTAACTGTTGCACCATTTAATCCAACAGTTTGTGATGC  592

Query  474  TCTGCTTGATAAGGACGAGACTGATTCGTCCAAAGATACTGAAAAACTCTCTTCCCTTGGAGAAGAGATGAGAG  547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TCTGCTTGATAAGGACGAGACTGATTCGTCCAAAGATACTGAAAAACTCTCTTCCCTTGGAGAAGAGATGAGAG  666

Query  548  AAGATGGTCTTAGCCCAAATGAAAGCAAACTTTGTACTGAATCTGAAGGGATCAGCCCCAATAACTCTGCCTGG  621
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AAGATGGTCTTAGCCCAAATGAAAGCAAACTTTGTACTGAATCTGAAGGGATCAGCCCCAATAACTCTGCCTGG  740

Query  622  AATGGGCCCCAGCTCTCTTCTTCAAACAATAACTTTCAACAGACTGTCTCTGATAAAAATATGCCTGACAGTGA  695
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AATGGGCCCCAGCTCTCTTCTTCAAACAATAACTTTCAACAGACTGTCTCTGATAAAAATATGCCTGACAGTGA  814

Query  696  GAACCCTACGTCTGTATTCTCTCGGATCTCAGACCATTCAGAGACTCCTAATATGGAGTTATCCTGCAGAAATG  769
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GAACCCTACGTCTGTATTCTCTCGGATCTCAGACCATTCAGAGACTCCTAATATGGAGTTATCCTGCAGAAATG  888

Query  770  GTGGTTCACACAAGTCAAGTTGTGAAATGAGATCTCTGGTTGTTTCCACCTCATCAAACAAACAGGATGTTCTT  843
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct  889  GTGGTTCACACAAGTCAAGTTGTGAAATGAGATCTCTGGTTGTTTCCACCTCATCAAACAAA---GATGTTCTT  959

Query  844  AACAAGGATTCTGGGAAGATGAAAGGCCATGAGAGAAGACTAGGCAAAGTCATTCCTGTTCTACAAACTAAGAC  917
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  960  AACAAGGATTCTGGGAAGATGAAAGGCCATGAGAGAAGACTAGGCAAAGTCATTCCTGTTCTACAAACTAAGAC  1033

Query  918  CAGGACTAATGTTCCGACGTTTTCACAGTCAAATCTAGAACAGCAGAAGCAGCTTTATCTCAGGAGTGTCATTG  991
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034  CAGGACTAATGTTCCGACGTTTTCACAGTCAAATCTAGAACAGCAGAAGCAGCTTTATCTCAGGAGTGTCATTG  1107

Query  992  CTCATATAGAAGACCCAGAGGACACTAACCAA------------------------------------------  1023
            ||||||||||||||||||||||||||||||||                                          
Sbjct 1108  CTCATATAGAAGACCCAGAGGACACTAACCAAGCCAAAAAATACTGGAAACAGCTTTGATAAAATGTTGATAAA  1181

Query 1024  --------------------------------GGTATCTCGGGGGAGCTTTGTGCCTTGATGGATCAAGTTCAT  1065
                                            ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182  TGAAGGATGAATCCCTAGAAGTGGAATTGCTGGGTATCTCGGGGGAGCTTTGTGCCTTGATGGATCAAGTTCAT  1255

Query 1066  CATATGCAGCACTCAAAATGGCAGCATCCTTCGGACCTCACCACGCGAAACTACGCCCGCCGACAGAAACATCT  1139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256  CATATGCAGCACTCAAAATGGCAGCATCCTTCGGACCTCACCACGCGAAACTACGCCCGCCGACAGAAACATCT  1329

Query 1140  GCAAAGATACAGTCTGACTCAGTGGGTTGACAGGAACATGCGAAGCCACCATCGGTTCCAGCGTCTCCCAGACT  1213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330  GCAAAGATACAGTCTGACTCAGTGGGTTGACAGGAACATGCGAAGCCACCATCGGTTCCAGCGTCTCCCAGACT  1403

Query 1214  TCTCGTACAGA---------------------------------------------------------------  1224
            ||||||||||.                                                               
Sbjct 1404  TCTCGTACAGTTAATTTGTGTCATCCCATCAGCAATGAAGGTCCCTATCCAGGGTCCTGCTTGGAGCAGCATTT  1477

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1478  CATGTTCTTTTGCTGTTTTGTGCTTTGCCGATTTTGGATTTTATTTTTCACAAAATTTTTATTTAAAAAACTCG  1551

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1552  TCACCTTTTGGAAATGCCCATTGCCGACTTGAATTTTTTTGTATGAAGTCCCTCCTGATTTTGTGTGTGTGTGT  1625

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1626  CTGTGTTTAAGCAAGCGTTCGGTTGGTATAGTTTTTTTTTGTTTTTTTAATTTAAATTGAAGGTAGCTGCCTCC  1699

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1700  TGAAAGCCAGCATTAAGCCAGAACACCCAGGTTCAAGCAAAAGACCCACCTCTCTGCAGAGGCAAAGTCTACTT  1773

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1774  TCTGGTACCTCAAAGAAATCATTGTTCAATCTTCCATAAGGAAGAGATTCTTTACCAGGCTGTGAGCCAGTGTT  1847

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1848  AGATAACTTGTGAATGGATATAAGTTACTTTTAACAACCCCTCTTACTTTTTTATTTGAATCCTCTGAATACCT  1921

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1922  GTCAGTATTTTAAAGTTGGCAATCCAGGACATTATAAGTAGGATGGAGCAGGAGAAGAATCCTATTGAAAGGAC  1995

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1996  AAATTAAAATAGTAAATCCTCTCCTCTCCCTTCTGTAGGTACTAGCTGCCTTGATTTTTTTTTGTGGGTGGGGG  2069

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2070  GGATTTTTTCATTCCTTATTGAACTTATTTTGCACAATAGTGTTTACAAATCTTATACATCTTACTTTGACAGA  2143

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2144  AGACTTATAATACCTTGTGGTCTTGAGACTGGTTGTCTCCTTTGCCTTTCTTCAAGGATTTTCCTTTTTCTTTT  2217

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2218  TACCCCCCAGTGACCACTCTGCTCTTTAGGATTCTAGTGGCAGTATTCTTGTAACCTGTTAGACGTGGATATAC  2291

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2292  CTCTTCAGGATGGCCTCCTTGCTGTCTTTATTGAAGAGCTGCCCACCCAGAGTCTTGACTCTAGGGCAGGCTAG  2365

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2366  TGCTATTGTGGTGTCAGTTGATATTTAGTTTCATTTGCTGAACCCCAAATTTGAGTGTTAGTTAGGGAGCCTCC  2439

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2440  ATTCTGTGGGAGAGTGTGGAAAGGCACTCTTTTTTCTCCATATTAGTTAACAAGAGGTGTCTTTAGGCCCTGGA  2513

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2514  TGTTACCATCTCATTTGGTCAAGCCCCTGATACCTAGTTTCACATGGATGCTAACGTGGATGTAATATAGTTGT  2587

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2588  GACAGCCTATGCACAAAAGCATTACCTGATCTTAAGGTTTGGTATTCTAACCAAAGTTGACAGACTGTGCGTCT  2661

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2662  GTCTTAATGGATGTCTTAGGAGTTGGTTATTCTCTCTTTTTTTTTTGAGACGGAGTTTCGCTGTTGTTGCCCAG  2735

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2736  GCTGGAGTGCAATGGCGTATCTCCACTCACCACAACCTCCGCCTCCTGGGTTCAAGGGATTCTCCTGTCTTAGC  2809

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2810  CTCCTGAGTAGCTGTGATTACAGGCATGCGCCACCATGCCTGGCTAATTTCATATTTTTTAGTAGAGACAGGAT  2883

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2884  TTCTCCATGTTGGTCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCTGCCCACCTCGGCCTCCTAAAGTGCT  2957

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2958  GGGATTACAGGCATGAGCCACTGCACCTGGCCGGTTATTCTCTCTTTACAGATAGCTATAGACATCATTTTAGG  3031

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3032  AAGTGTTGCAGTCTGGCATTTGTGCTATTGTTCATTCTCTGTGAAGGCTGTTCATAGTTGCTATAGCCTGTGTT  3105

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3106  TAGTTTTGTGATTTCATCAATCCCATCTTTCTGTGTGAGTAATGCATTCTAAACATCCTACCCCACTTTAGAAA  3179

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3180  CGGACGTGGGGAACGCTTGGTCATTTAAGCCAACAATAAATTTAGGTGAATGTCCCTAAGTGTTTACTGTTTTT  3253

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3254  ATCCAGTCAAGGATTTGCTTTTCCTTGAACATTTGTTTTAAATTCTGGGGCCAAAATGCAAAGGAGAAGTTCTA  3327

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3328  TTCAAAGGCAGTAGTTGAAATCTATTATTTTAGTTAGCCTACTTGGCATTTACTACATCGGTCACTTCTCCAGG  3401

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3402  CTGCCCTAAATTAGGTTGATGGAGTGAGACATGCCAAACATCCACCTTTGGGACCATAGCATAGTTAAAATTAA  3475

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3476  ATGTAGTTGGAATAGCTAGCATTGCAGCTACAGTAGGGAACTGTAGTCTAGTTCCCTACAGAAAACCCAAGGAG  3549

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3550  TGAAGGGACAGGATTTTGCCTAGGCAAAAATCTAAGACTCGTGCCCTCCTGGTACATGGGGTTTTAAGACTGAA  3623

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3624  TGTGTAATAGGAGCACTGCCTTTGCCAAATCAAATGAGTGACAGGTTAACTAGAAAATGTGACAATCACATTTC  3697

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3698  CTCTTAGCTCAAATAATTCTGTTTTTCCAAAGCTTTAGCAGCTTAATTAAATCTGTTGGACTGGGGGAGGAGAG  3771

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3772  AGCTGTTCTCTAGTGGTTAACATGGTATTCTTTAAGAAGAAAAAACAAAGCCAAAGAAAACTCATTATCTGGCA  3845

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3846  TGTTCGCCTTAAAGATGGTACTGGGTAGAATCTGGAGTTTTCATCTCTTTTCAAAGCTGCATATCTCTTATATT  3919

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3920  TGGTATTGGCCTCTAAGTCTAATATTGCAGTTGGAATTCTTGCTGTATTATTTTTTAAGCAAGTGTTAGGTGCA  3993

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3994  TTTAACTGCTTTCTTCATCCATGACGACATTCCCACCATGGGGGTCTTGACAAAGCAGAGTAAAAATATGCTGT  4067

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 4068  TTACATTGTTTACTTACAAGTAAGGAGCCTGAAATAACCTGTAGTTTCGAATGCAGGCCCTGATTTACTGGCGT  4141

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 4142  TGTCAGTTTCAATTATGAAACTGAAGTTTGGTGCCTCCTCTTTATCATGTTTTTTCCCTTGTAGCAGTTGTGTT  4215

Query 1225  ------------------------------------------------------  1224
                                                                  
Sbjct 4216  TAATGTCATTAAAAAGAAATAAAAGTTCTTTGTCAGTGACATAAAAAAAAAAAA  4269

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