Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08866
- Subject:
- NR_135107.1
- Aligned Length:
- 4226
- Identities:
- 1223
- Gaps:
- 3002
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAAGGTGGGAGTCAATCATTTTGACAAGTCTCCTGAAAGGAACAGCTAGCAGGAACTGAAACCTTTTTCCATTT 74
Query 1 ---------------------------------------------ATGATGTGCTCACGGGTGCCCTCTGAACA 29
|||||||||||||||||||||||||||||
Sbjct 75 GGTCTCGTGGCAAAGGCAGAGATTGCTCCAGCAGCTCCACACAAAATGATGTGCTCACGGGTGCCCTCTGAACA 148
Query 30 GTCTTCTGGTACCTCTCTCTTGCCTAAAGACGGTGCCCCATTTTCTTGGGATTCCTTGGATGAGGATGGATTGG 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GTCTTCTGGTACCTCTCTCTTGCCTAAAGACGGTGCCCCATTTTCTTGGGATTCCTTGGATGAGGATGGATTGG 222
Query 104 ATGACTCCTTGCTGGAGCTGTCAGAGGGAGAAGAAGATGATGGTGATGTAAATTACACAGAGGAAGAGATTGAT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ATGACTCCTTGCTGGAGCTGTCAGAGGGAGAAGAAGATGATGGTGATGTAAATTACACAGAGGAAGAGATTGAT 296
Query 178 GCACTGTTGAAGGAAGATGACCCATCATATGAGCAGTCTTCTGGGGAAGATGATGGTGGGCATGTTGAGAAGGG 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCACTGTTGAAGGAAGATGACCCATCATATGAGCAGTCTTCTGGGGAAGATGATGGTGGGCATGTTGAGAAGGG 370
Query 252 AGAAAGAGGGAGTCAAATTCTACTTGATACTCCCCGAGAGAAAAATTCATCGTACAGCCTGGGACCAGTAGCTG 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AGAAAGAGGGAGTCAAATTCTACTTGATACTCCCCGAGAGAAAAATTCATCGTACAGCCTGGGACCAGTAGCTG 444
Query 326 AGACTCCTGACCTCTTCAAACTACCTCAGCTAAGTACATCAAGTGGTCATGGACCAGCTCATACTAAACCATTA 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AGACTCCTGACCTCTTCAAACTACCTCAGCTAAGTACATCAAGTGGTCATGGACCAGCTCATACTAAACCATTA 518
Query 400 AACAGACGCTCTGTACTAGAAAAGAATCTTATAAAAGTAACTGTTGCACCATTTAATCCAACAGTTTGTGATGC 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AACAGACGCTCTGTACTAGAAAAGAATCTTATAAAAGTAACTGTTGCACCATTTAATCCAACAGTTTGTGATGC 592
Query 474 TCTGCTTGATAAGGACGAGACTGATTCGTCCAAAGATACTGAAAAACTCTCTTCCCTTGGAGAAGAGATGAGAG 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TCTGCTTGATAAGGACGAGACTGATTCGTCCAAAGATACTGAAAAACTCTCTTCCCTTGGAGAAGAGATGAGAG 666
Query 548 AAGATGGTCTTAGCCCAAATGAAAGCAAACTTTGTACTGAATCTGAAGGGATCAGCCCCAATAACTCTGCCTGG 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAGATGGTCTTAGCCCAAATGAAAGCAAACTTTGTACTGAATCTGAAGGGATCAGCCCCAATAACTCTGCCTGG 740
Query 622 AATGGGCCCCAGCTCTCTTCTTCAAACAATAACTTTCAACAGACTGTCTCTGATAAAAATATGCCTGACAGTGA 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AATGGGCCCCAGCTCTCTTCTTCAAACAATAACTTTCAACAGACTGTCTCTGATAAAAATATGCCTGACAGTGA 814
Query 696 GAACCCTACGTCTGTATTCTCTCGGATCTCAGACCATTCAGAGACTCCTAATATGGAGTTATCCTGCAGAAATG 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GAACCCTACGTCTGTATTCTCTCGGATCTCAGACCATTCAGAGACTCCTAATATGGAGTTATCCTGCAGAAATG 888
Query 770 GTGGTTCACACAAGTCAAGTTGTGAAATGAGATCTCTGGTTGTTTCCACCTCATCAAACAAACAGGATGTTCTT 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GTGGTTCACACAAGTCAAGTTGTGAAATGAGATCTCTGGTTGTTTCCACCTCATCAAACAAACAGGATGTTCTT 962
Query 844 AACAAGGATTCTGGGAAGATGAAAGGCCATGAGAGAAGACTAGGCAAAGTCATTCCTGTTCTACAAACTAAGAC 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AACAAGGATTCTGGGAAGATGAAAGGCCATGAGAGAAGACTAGGCAAAGTCATTCCTGTTCTACAAACTAAGAC 1036
Query 918 CAGGACTAATGTTCCGACGTTTTCACAGTCAAATCTAGAACAGCAGAAGCAGCTTTATCTCAGGAGTGTCATTG 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CAGGACTAATGTTCCGACGTTTTCACAGTCAAATCTAGAACAGCAGAAGCAGCTTTATCTCAGGAGTGTCATTG 1110
Query 992 CTCATATAGAAGACCCAGAGGACACTAACCAA----------------------------GGTATCTCGGGGGA 1037
|||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1111 CTCATATAGAAGACCCAGAGGACACTAACCAAGGATGAATCCCTAGAAGTGGAATTGCTGGGTATCTCGGGGGA 1184
Query 1038 GCTTTGTGCCTTGATGGATCAAGTTCATCATATGCAGCACTCAAAATGGCAGCATCCTTCGGACCTCACCACGC 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GCTTTGTGCCTTGATGGATCAAGTTCATCATATGCAGCACTCAAAATGGCAGCATCCTTCGGACCTCACCACGC 1258
Query 1112 GAAACTACGCCCGCCGACAGAAACATCTGCAAAGATACAGTCTGACTCAGTGGGTTGACAGGAACATGCGAAGC 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GAAACTACGCCCGCCGACAGAAACATCTGCAAAGATACAGTCTGACTCAGTGGGTTGACAGGAACATGCGAAGC 1332
Query 1186 CACCATCGGTTCCAGCGTCTCCCAGACTTCTCGTACAGA----------------------------------- 1224
||||||||||||||||||||||||||||||||||||||.
Sbjct 1333 CACCATCGGTTCCAGCGTCTCCCAGACTTCTCGTACAGTTAATTTGTGTCATCCCATCAGCAATGAAGGTCCCT 1406
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1407 ATCCAGGGTCCTGCTTGGAGCAGCATTTCATGTTCTTTTGCTGTTTTGTGCTTTGCCGATTTTGGATTTTATTT 1480
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1481 TTCACAAAATTTTTATTTAAAAAACTCGTCACCTTTTGGAAATGCCCATTGCCGACTTGAATTTTTTTGTATGA 1554
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1555 AGTCCCTCCTGATTTTGTGTGTGTGTGTCTGTGTTTAAGCAAGCGTTCGGTTGGTATAGTTTTTTTTTGTTTTT 1628
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1629 TTAATTTAAATTGAAGGTAGCTGCCTCCTGAAAGCCAGCATTAAGCCAGAACACCCAGGTTCAAGCAAAAGACC 1702
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1703 CACCTCTCTGCAGAGGCAAAGTCTACTTTCTGGTACCTCAAAGAAATCATTGTTCAATCTTCCATAAGGAAGAG 1776
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1777 ATTCTTTACCAGGCTGTGAGCCAGTGTTAGATAACTTGTGAATGGATATAAGTTACTTTTAACAACCCCTCTTA 1850
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1851 CTTTTTTATTTGAATCCTCTGAATACCTGTCAGTATTTTAAAGTTGGCAATCCAGGACATTATAAGTAGGATGG 1924
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1925 AGCAGGAGAAGAATCCTATTGAAAGGACAAATTAAAATAGTAAATCCTCTCCTCTCCCTTCTGTAGGTACTAGC 1998
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1999 TGCCTTGATTTTTTTTTGTGGGTGGGGGGGATTTTTTCATTCCTTATTGAACTTATTTTGCACAATAGTGTTTA 2072
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2073 CAAATCTTATACATCTTACTTTGACAGAAGACTTATAATACCTTGTGGTCTTGAGACTGGTTGTCTCCTTTGCC 2146
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2147 TTTCTTCAAGGATTTTCCTTTTTCTTTTTACCCCCCAGTGACCACTCTGCTCTTTAGGATTCTAGTGGCAGTAT 2220
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2221 TCTTGTAACCTGTTAGACGTGGATATACCTCTTCAGGATGGCCTCCTTGCTGTCTTTATTGAAGAGCTGCCCAC 2294
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2295 CCAGAGTCTTGACTCTAGGGCAGGCTAGTGCTATTGTGGTGTCAGTTGATATTTAGTTTCATTTGCTGAACCCC 2368
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2369 AAATTTGAGTGTTAGTTAGGGAGCCTCCATTCTGTGGGAGAGTGTGGAAAGGCACTCTTTTTTCTCCATATTAG 2442
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2443 TTAACAAGAGGTGTCTTTAGGCCCTGGATGTTACCATCTCATTTGGTCAAGCCCCTGATACCTAGTTTCACATG 2516
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2517 GATGCTAACGTGGATGTAATATAGTTGTGACAGCCTATGCACAAAAGCATTACCTGATCTTAAGGTTTGGTATT 2590
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2591 CTAACCAAAGTTGACAGACTGTGCGTCTGTCTTAATGGATGTCTTAGGAGTTGGTTATTCTCTCTTTTTTTTTT 2664
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2665 GAGACGGAGTTTCGCTGTTGTTGCCCAGGCTGGAGTGCAATGGCGTATCTCCACTCACCACAACCTCCGCCTCC 2738
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2739 TGGGTTCAAGGGATTCTCCTGTCTTAGCCTCCTGAGTAGCTGTGATTACAGGCATGCGCCACCATGCCTGGCTA 2812
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2813 ATTTCATATTTTTTAGTAGAGACAGGATTTCTCCATGTTGGTCAGGCTGGTCTTGAACTCCTGACCTCAGGTGA 2886
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2887 TCTGCCCACCTCGGCCTCCTAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCTGGCCGGTTATTCTCTCTT 2960
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2961 TACAGATAGCTATAGACATCATTTTAGGAAGTGTTGCAGTCTGGCATTTGTGCTATTGTTCATTCTCTGTGAAG 3034
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3035 GCTGTTCATAGTTGCTATAGCCTGTGTTTAGTTTTGTGATTTCATCAATCCCATCTTTCTGTGTGAGTAATGCA 3108
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3109 TTCTAAACATCCTACCCCACTTTAGAAACGGACGTGGGGAACGCTTGGTCATTTAAGCCAACAATAAATTTAGG 3182
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3183 TGAATGTCCCTAAGTGTTTACTGTTTTTATCCAGTCAAGGATTTGCTTTTCCTTGAACATTTGTTTTAAATTCT 3256
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3257 GGGGCCAAAATGCAAAGGAGAAGTTCTATTCAAAGGCAGTAGTTGAAATCTATTATTTTAGTTAGCCTACTTGG 3330
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3331 CATTTACTACATCGGTCACTTCTCCAGGCTGCCCTAAATTAGGTTGATGGAGTGAGACATGCCAAACATCCACC 3404
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3405 TTTGGGACCATAGCATAGTTAAAATTAAATGTAGTTGGAATAGCTAGCATTGCAGCTACAGTAGGGAACTGTAG 3478
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3479 TCTAGTTCCCTACAGAAAACCCAAGGAGTGAAGGGACAGGATTTTGCCTAGGCAAAAATCTAAGACTCGTGCCC 3552
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3553 TCCTGGTACATGGGGTTTTAAGACTGAATGTGTAATAGGAGCACTGCCTTTGCCAAATCAAATGAGTGACAGGT 3626
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3627 TAACTAGAAAATGTGACAATCACATTTCCTCTTAGCTCAAATAATTCTGTTTTTCCAAAGCTTTAGCAGCTTAA 3700
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3701 TTAAATCTGTTGGACTGGGGGAGGAGAGAGCTGTTCTCTAGTGGTTAACATGGTATTCTTTAAGAAGAAAAAAC 3774
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3775 AAAGCCAAAGAAAACTCATTATCTGGCATGTTCGCCTTAAAGATGGTACTGGGTAGAATCTGGAGTTTTCATCT 3848
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3849 CTTTTCAAAGCTGCATATCTCTTATATTTGGTATTGGCCTCTAAGTCTAATATTGCAGTTGGAATTCTTGCTGT 3922
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3923 ATTATTTTTTAAGCAAGTGTTAGGTGCATTTAACTGCTTTCTTCATCCATGACGACATTCCCACCATGGGGGTC 3996
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3997 TTGACAAAGCAGAGTAAAAATATGCTGTTTACATTGTTTACTTACAAGTAAGGAGCCTGAAATAACCTGTAGTT 4070
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4071 TCGAATGCAGGCCCTGATTTACTGGCGTTGTCAGTTTCAATTATGAAACTGAAGTTTGGTGCCTCCTCTTTATC 4144
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4145 ATGTTTTTTCCCTTGTAGCAGTTGTGTTTAATGTCATTAAAAAGAAATAAAAGTTCTTTGTCAGTGACATAAAA 4218
Query 1225 -------- 1224
Sbjct 4219 AAAAAAAA 4226
