Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08866
- Subject:
- XR_001737363.2
- Aligned Length:
- 4371
- Identities:
- 1223
- Gaps:
- 3147
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTGCTGGTTTGCCCTCCCCCTGGTGTTGGCCCGGCTGACTCGGGGTAGGGGAGGTCGGGGAGGGGGCGATAAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATGGCGCAGGGGGCGGAGTGAGGCGCAGTCGTTCGCCCAGGCTTTGGCCCGGCTTCCGGAGGAAGGTGGGAGTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AATCATTTTGACAAGTCTCCTGAAAGGAACAGCTAGCAGGAACTGAAACCTTTTTCCATTTGGTCTCGTGGCAA 222
Query 1 --------------------------------ATGATGTGCTCACGGGTGCCCTCTGAACAGTCTTCTGGTACC 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AGGCAGAGATTGCTCCAGCAGCTCCACACAAAATGATGTGCTCACGGGTGCCCTCTGAACAGTCTTCTGGTACC 296
Query 43 TCTCTCTTGCCTAAAGACGGTGCCCCATTTTCTTGGGATTCCTTGGATGAGGATGGATTGGATGACTCCTTGCT 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCTCTCTTGCCTAAAGACGGTGCCCCATTTTCTTGGGATTCCTTGGATGAGGATGGATTGGATGACTCCTTGCT 370
Query 117 GGAGCTGTCAGAGGGAGAAGAAGATGATGGTGATGTAAATTACACAGAGGAAGAGATTGATGCACTGTTGAAGG 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGAGCTGTCAGAGGGAGAAGAAGATGATGGTGATGTAAATTACACAGAGGAAGAGATTGATGCACTGTTGAAGG 444
Query 191 AAGATGACCCATCATATGAGCAGTCTTCTGGGGAAGATGATGGTGGGCATGTTGAGAAGGGAGAAAGAGGGAGT 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AAGATGACCCATCATATGAGCAGTCTTCTGGGGAAGATGATGGTGGGCATGTTGAGAAGGGAGAAAGAGGGAGT 518
Query 265 CAAATTCTACTTGATACTCCCCGAGAGAAAAATTCATCGTACAGCCTGGGACCAGTAGCTGAGACTCCTGACCT 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CAAATTCTACTTGATACTCCCCGAGAGAAAAATTCATCGTACAGCCTGGGACCAGTAGCTGAGACTCCTGACCT 592
Query 339 CTTCAAACTACCTCAGCTAAGTACATCAAGTGGTCATGGACCAGCTCATACTAAACCATTAAACAGACGCTCTG 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTTCAAACTACCTCAGCTAAGTACATCAAGTGGTCATGGACCAGCTCATACTAAACCATTAAACAGACGCTCTG 666
Query 413 TACTAGAAAAGAATCTTATAAAAGTAACTGTTGCACCATTTAATCCAACAGTTTGTGATGCTCTGCTTGATAAG 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TACTAGAAAAGAATCTTATAAAAGTAACTGTTGCACCATTTAATCCAACAGTTTGTGATGCTCTGCTTGATAAG 740
Query 487 GACGAGACTGATTCGTCCAAAGATACTGAAAAACTCTCTTCCCTTGGAGAAGAGATGAGAGAAGATGGTCTTAG 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GACGAGACTGATTCGTCCAAAGATACTGAAAAACTCTCTTCCCTTGGAGAAGAGATGAGAGAAGATGGTCTTAG 814
Query 561 CCCAAATGAAAGCAAACTTTGTACTGAATCTGAAGGGATCAGCCCCAATAACTCTGCCTGGAATGGGCCCCAGC 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCCAAATGAAAGCAAACTTTGTACTGAATCTGAAGGGATCAGCCCCAATAACTCTGCCTGGAATGGGCCCCAGC 888
Query 635 TCTCTTCTTCAAACAATAACTTTCAACAGACTGTCTCTGATAAAAATATGCCTGACAGTGAGAACCCTACGTCT 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TCTCTTCTTCAAACAATAACTTTCAACAGACTGTCTCTGATAAAAATATGCCTGACAGTGAGAACCCTACGTCT 962
Query 709 GTATTCTCTCGGATCTCAGACCATTCAGAGACTCCTAATATGGAGTTATCCTGCAGAAATGGTGGTTCACACAA 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GTATTCTCTCGGATCTCAGACCATTCAGAGACTCCTAATATGGAGTTATCCTGCAGAAATGGTGGTTCACACAA 1036
Query 783 GTCAAGTTGTGAAATGAGATCTCTGGTTGTTTCCACCTCATCAAACAAACAGGATGTTCTTAACAAGGATTCTG 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GTCAAGTTGTGAAATGAGATCTCTGGTTGTTTCCACCTCATCAAACAAACAGGATGTTCTTAACAAGGATTCTG 1110
Query 857 GGAAGATGAAAGGCCATGAGAGAAGACTAGGCAAAGTCATTCCTGTTCTACAAACTAAGACCAGGACTAATGTT 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GGAAGATGAAAGGCCATGAGAGAAGACTAGGCAAAGTCATTCCTGTTCTACAAACTAAGACCAGGACTAATGTT 1184
Query 931 CCGACGTTTTCACAGTCAAATCTAGAACAGCAGAAGCAGCTTTATCTCAGGAGTGTCATTGCTCATATAGAAGA 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CCGACGTTTTCACAGTCAAATCTAGAACAGCAGAAGCAGCTTTATCTCAGGAGTGTCATTGCTCATATAGAAGA 1258
Query 1005 CCCAGAGGACACTAACCA---------------------------------------------------AGGTA 1027
|||||||||||||||||| |||||
Sbjct 1259 CCCAGAGGACACTAACCAAGGAAAATCAGTCAAGATTTCTACTAGATCATCGCAGTTTTGTTGACCTAGAGGTA 1332
Query 1028 TCTCGGGGGAGCTTTGTGCCTTGATGGATCAAGTTCATCATATGCAGCACTCAAAATGGCAGCATCCTTCGGAC 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TCTCGGGGGAGCTTTGTGCCTTGATGGATCAAGTTCATCATATGCAGCACTCAAAATGGCAGCATCCTTCGGAC 1406
Query 1102 CTCACCACGCGAAACTACGCCCGCCGACAGAAACATCTGCAAAGATACAGTCTGACTCAGTGGGTTGACAGGAA 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 CTCACCACGCGAAACTACGCCCGCCGACAGAAACATCTGCAAAGATACAGTCTGACTCAGTGGGTTGACAGGAA 1480
Query 1176 CATGCGAAGCCACCATCGGTTCCAGCGTCTCCCAGACTTCTCGTACAGA------------------------- 1224
||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 1481 CATGCGAAGCCACCATCGGTTCCAGCGTCTCCCAGACTTCTCGTACAGTTAATTTGTGTCATCCCATCAGCAAT 1554
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1555 GAAGGTCCCTATCCAGGGTCCTGCTTGGAGCAGCATTTCATGTTCTTTTGCTGTTTTGTGCTTTGCCGATTTTG 1628
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1629 GATTTTATTTTTCACAAAATTTTTATTTAAAAAACTCGTCACCTTTTGGAAATGCCCATTGCCGACTTGAATTT 1702
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1703 TTTTGTATGAAGTCCCTCCTGATTTTGTGTGTGTGTGTCTGTGTTTAAGCAAGCGTTCGGTTGGTATAGTTTTT 1776
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1777 TTTTGTTTTTTTAATTTAAATTGAAGGTAGCTGCCTCCTGAAAGCCAGCATTAAGCCAGAACACCCAGGTTCAA 1850
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1851 GCAAAAGACCCACCTCTCTGCAGAGGCAAAGTCTACTTTCTGGTACCTCAAAGAAATCATTGTTCAATCTTCCA 1924
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1925 TAAGGAAGAGATTCTTTACCAGGCTGTGAGCCAGTGTTAGATAACTTGTGAATGGATATAAGTTACTTTTAACA 1998
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1999 ACCCCTCTTACTTTTTTATTTGAATCCTCTGAATACCTGTCAGTATTTTAAAGTTGGCAATCCAGGACATTATA 2072
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2073 AGTAGGATGGAGCAGGAGAAGAATCCTATTGAAAGGACAAATTAAAATAGTAAATCCTCTCCTCTCCCTTCTGT 2146
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2147 AGGTACTAGCTGCCTTGATTTTTTTTTGTGGGTGGGGGGGATTTTTTCATTCCTTATTGAACTTATTTTGCACA 2220
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2221 ATAGTGTTTACAAATCTTATACATCTTACTTTGACAGAAGACTTATAATACCTTGTGGTCTTGAGACTGGTTGT 2294
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2295 CTCCTTTGCCTTTCTTCAAGGATTTTCCTTTTTCTTTTTACCCCCCAGTGACCACTCTGCTCTTTAGGATTCTA 2368
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2369 GTGGCAGTATTCTTGTAACCTGTTAGACGTGGATATACCTCTTCAGGATGGCCTCCTTGCTGTCTTTATTGAAG 2442
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2443 AGCTGCCCACCCAGAGTCTTGACTCTAGGGCAGGCTAGTGCTATTGTGGTGTCAGTTGATATTTAGTTTCATTT 2516
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2517 GCTGAACCCCAAATTTGAGTGTTAGTTAGGGAGCCTCCATTCTGTGGGAGAGTGTGGAAAGGCACTCTTTTTTC 2590
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2591 TCCATATTAGTTAACAAGAGGTGTCTTTAGGCCCTGGATGTTACCATCTCATTTGGTCAAGCCCCTGATACCTA 2664
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2665 GTTTCACATGGATGCTAACGTGGATGTAATATAGTTGTGACAGCCTATGCACAAAAGCATTACCTGATCTTAAG 2738
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2739 GTTTGGTATTCTAACCAAAGTTGACAGACTGTGCGTCTGTCTTAATGGATGTCTTAGGAGTTGGTTATTCTCTC 2812
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2813 TTTTTTTTTTGAGACGGAGTTTCGCTGTTGTTGCCCAGGCTGGAGTGCAATGGCGTATCTCCACTCACCACAAC 2886
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2887 CTCCGCCTCCTGGGTTCAAGGGATTCTCCTGTCTTAGCCTCCTGAGTAGCTGTGATTACAGGCATGCGCCACCA 2960
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2961 TGCCTGGCTAATTTCATATTTTTTAGTAGAGACAGGATTTCTCCATGTTGGTCAGGCTGGTCTTGAACTCCTGA 3034
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3035 CCTCAGGTGATCTGCCCACCTCGGCCTCCTAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCTGGCCGGTT 3108
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3109 ATTCTCTCTTTACAGATAGCTATAGACATCATTTTAGGAAGTGTTGCAGTCTGGCATTTGTGCTATTGTTCATT 3182
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3183 CTCTGTGAAGGCTGTTCATAGTTGCTATAGCCTGTGTTTAGTTTTGTGATTTCATCAATCCCATCTTTCTGTGT 3256
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3257 GAGTAATGCATTCTAAACATCCTACCCCACTTTAGAAACGGACGTGGGGAACGCTTGGTCATTTAAGCCAACAA 3330
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3331 TAAATTTAGGTGAATGTCCCTAAGTGTTTACTGTTTTTATCCAGTCAAGGATTTGCTTTTCCTTGAACATTTGT 3404
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3405 TTTAAATTCTGGGGCCAAAATGCAAAGGAGAAGTTCTATTCAAAGGCAGTAGTTGAAATCTATTATTTTAGTTA 3478
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3479 GCCTACTTGGCATTTACTACATCGGTCACTTCTCCAGGCTGCCCTAAATTAGGTTGATGGAGTGAGACATGCCA 3552
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3553 AACATCCACCTTTGGGACCATAGCATAGTTAAAATTAAATGTAGTTGGAATAGCTAGCATTGCAGCTACAGTAG 3626
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3627 GGAACTGTAGTCTAGTTCCCTACAGAAAACCCAAGGAGTGAAGGGACAGGATTTTGCCTAGGCAAAAATCTAAG 3700
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3701 ACTCGTGCCCTCCTGGTACATGGGGTTTTAAGACTGAATGTGTAATAGGAGCACTGCCTTTGCCAAATCAAATG 3774
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3775 AGTGACAGGTTAACTAGAAAATGTGACAATCACATTTCCTCTTAGCTCAAATAATTCTGTTTTTCCAAAGCTTT 3848
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3849 AGCAGCTTAATTAAATCTGTTGGACTGGGGGAGGAGAGAGCTGTTCTCTAGTGGTTAACATGGTATTCTTTAAG 3922
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3923 AAGAAAAAACAAAGCCAAAGAAAACTCATTATCTGGCATGTTCGCCTTAAAGATGGTACTGGGTAGAATCTGGA 3996
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3997 GTTTTCATCTCTTTTCAAAGCTGCATATCTCTTATATTTGGTATTGGCCTCTAAGTCTAATATTGCAGTTGGAA 4070
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4071 TTCTTGCTGTATTATTTTTTAAGCAAGTGTTAGGTGCATTTAACTGCTTTCTTCATCCATGACGACATTCCCAC 4144
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4145 CATGGGGGTCTTGACAAAGCAGAGTAAAAATATGCTGTTTACATTGTTTACTTACAAGTAAGGAGCCTGAAATA 4218
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4219 ACCTGTAGTTTCGAATGCAGGCCCTGATTTACTGGCGTTGTCAGTTTCAATTATGAAACTGAAGTTTGGTGCCT 4292
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4293 CCTCTTTATCATGTTTTTTCCCTTGTAGCAGTTGTGTTTAATGTCATTAAAAAGAAATAAAAGTTCTTTGTCAG 4366
Query 1225 ----- 1224
Sbjct 4367 TGACA 4371
