Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_08866
- Subject:
- XR_946740.3
- Aligned Length:
- 4348
- Identities:
- 1223
- Gaps:
- 3124
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTGCTGGTTTGCCCTCCCCCTGGTGTTGGCCCGGCTGACTCGGGGTAGGGGAGGTCGGGGAGGGGGCGATAAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATGGCGCAGGGGGCGGAGTGAGGCGCAGTCGTTCGCCCAGGCTTTGGCCCGGCTTCCGGAGGAAGGTGGGAGTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AATCATTTTGACAAGTCTCCTGAAAGGAACAGCTAGCAGGAACTGAAACCTTTTTCCATTTGGTCTCGTGGCAA 222
Query 1 --------------------------------ATGATGTGCTCACGGGTGCCCTCTGAACAGTCTTCTGGTACC 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AGGCAGAGATTGCTCCAGCAGCTCCACACAAAATGATGTGCTCACGGGTGCCCTCTGAACAGTCTTCTGGTACC 296
Query 43 TCTCTCTTGCCTAAAGACGGTGCCCCATTTTCTTGGGATTCCTTGGATGAGGATGGATTGGATGACTCCTTGCT 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCTCTCTTGCCTAAAGACGGTGCCCCATTTTCTTGGGATTCCTTGGATGAGGATGGATTGGATGACTCCTTGCT 370
Query 117 GGAGCTGTCAGAGGGAGAAGAAGATGATGGTGATGTAAATTACACAGAGGAAGAGATTGATGCACTGTTGAAGG 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGAGCTGTCAGAGGGAGAAGAAGATGATGGTGATGTAAATTACACAGAGGAAGAGATTGATGCACTGTTGAAGG 444
Query 191 AAGATGACCCATCATATGAGCAGTCTTCTGGGGAAGATGATGGTGGGCATGTTGAGAAGGGAGAAAGAGGGAGT 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AAGATGACCCATCATATGAGCAGTCTTCTGGGGAAGATGATGGTGGGCATGTTGAGAAGGGAGAAAGAGGGAGT 518
Query 265 CAAATTCTACTTGATACTCCCCGAGAGAAAAATTCATCGTACAGCCTGGGACCAGTAGCTGAGACTCCTGACCT 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CAAATTCTACTTGATACTCCCCGAGAGAAAAATTCATCGTACAGCCTGGGACCAGTAGCTGAGACTCCTGACCT 592
Query 339 CTTCAAACTACCTCAGCTAAGTACATCAAGTGGTCATGGACCAGCTCATACTAAACCATTAAACAGACGCTCTG 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTTCAAACTACCTCAGCTAAGTACATCAAGTGGTCATGGACCAGCTCATACTAAACCATTAAACAGACGCTCTG 666
Query 413 TACTAGAAAAGAATCTTATAAAAGTAACTGTTGCACCATTTAATCCAACAGTTTGTGATGCTCTGCTTGATAAG 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TACTAGAAAAGAATCTTATAAAAGTAACTGTTGCACCATTTAATCCAACAGTTTGTGATGCTCTGCTTGATAAG 740
Query 487 GACGAGACTGATTCGTCCAAAGATACTGAAAAACTCTCTTCCCTTGGAGAAGAGATGAGAGAAGATGGTCTTAG 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GACGAGACTGATTCGTCCAAAGATACTGAAAAACTCTCTTCCCTTGGAGAAGAGATGAGAGAAGATGGTCTTAG 814
Query 561 CCCAAATGAAAGCAAACTTTGTACTGAATCTGAAGGGATCAGCCCCAATAACTCTGCCTGGAATGGGCCCCAGC 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCCAAATGAAAGCAAACTTTGTACTGAATCTGAAGGGATCAGCCCCAATAACTCTGCCTGGAATGGGCCCCAGC 888
Query 635 TCTCTTCTTCAAACAATAACTTTCAACAGACTGTCTCTGATAAAAATATGCCTGACAGTGAGAACCCTACGTCT 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TCTCTTCTTCAAACAATAACTTTCAACAGACTGTCTCTGATAAAAATATGCCTGACAGTGAGAACCCTACGTCT 962
Query 709 GTATTCTCTCGGATCTCAGACCATTCAGAGACTCCTAATATGGAGTTATCCTGCAGAAATGGTGGTTCACACAA 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GTATTCTCTCGGATCTCAGACCATTCAGAGACTCCTAATATGGAGTTATCCTGCAGAAATGGTGGTTCACACAA 1036
Query 783 GTCAAGTTGTGAAATGAGATCTCTGGTTGTTTCCACCTCATCAAACAAACAGGATGTTCTTAACAAGGATTCTG 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GTCAAGTTGTGAAATGAGATCTCTGGTTGTTTCCACCTCATCAAACAAACAGGATGTTCTTAACAAGGATTCTG 1110
Query 857 GGAAGATGAAAGGCCATGAGAGAAGACTAGGCAAAGTCATTCCTGTTCTACAAACTAAGACCAGGACTAATGTT 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GGAAGATGAAAGGCCATGAGAGAAGACTAGGCAAAGTCATTCCTGTTCTACAAACTAAGACCAGGACTAATGTT 1184
Query 931 CCGACGTTTTCACAGTCAAATCTAGAACAGCAGAAGCAGCTTTATCTCAGGAGTGTCATTGCTCATATAGAAGA 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CCGACGTTTTCACAGTCAAATCTAGAACAGCAGAAGCAGCTTTATCTCAGGAGTGTCATTGCTCATATAGAAGA 1258
Query 1005 CCCAGAGGACACTAACCAA----------------------------GGTATCTCGGGGGAGCTTTGTGCCTTG 1050
||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1259 CCCAGAGGACACTAACCAAGGATGAATCCCTAGAAGTGGAATTGCTGGGTATCTCGGGGGAGCTTTGTGCCTTG 1332
Query 1051 ATGGATCAAGTTCATCATATGCAGCACTCAAAATGGCAGCATCCTTCGGACCTCACCACGCGAAACTACGCCCG 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 ATGGATCAAGTTCATCATATGCAGCACTCAAAATGGCAGCATCCTTCGGACCTCACCACGCGAAACTACGCCCG 1406
Query 1125 CCGACAGAAACATCTGCAAAGATACAGTCTGACTCAGTGGGTTGACAGGAACATGCGAAGCCACCATCGGTTCC 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 CCGACAGAAACATCTGCAAAGATACAGTCTGACTCAGTGGGTTGACAGGAACATGCGAAGCCACCATCGGTTCC 1480
Query 1199 AGCGTCTCCCAGACTTCTCGTACAGA------------------------------------------------ 1224
|||||||||||||||||||||||||.
Sbjct 1481 AGCGTCTCCCAGACTTCTCGTACAGTTAATTTGTGTCATCCCATCAGCAATGAAGGTCCCTATCCAGGGTCCTG 1554
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1555 CTTGGAGCAGCATTTCATGTTCTTTTGCTGTTTTGTGCTTTGCCGATTTTGGATTTTATTTTTCACAAAATTTT 1628
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1629 TATTTAAAAAACTCGTCACCTTTTGGAAATGCCCATTGCCGACTTGAATTTTTTTGTATGAAGTCCCTCCTGAT 1702
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1703 TTTGTGTGTGTGTGTCTGTGTTTAAGCAAGCGTTCGGTTGGTATAGTTTTTTTTTGTTTTTTTAATTTAAATTG 1776
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1777 AAGGTAGCTGCCTCCTGAAAGCCAGCATTAAGCCAGAACACCCAGGTTCAAGCAAAAGACCCACCTCTCTGCAG 1850
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1851 AGGCAAAGTCTACTTTCTGGTACCTCAAAGAAATCATTGTTCAATCTTCCATAAGGAAGAGATTCTTTACCAGG 1924
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1925 CTGTGAGCCAGTGTTAGATAACTTGTGAATGGATATAAGTTACTTTTAACAACCCCTCTTACTTTTTTATTTGA 1998
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1999 ATCCTCTGAATACCTGTCAGTATTTTAAAGTTGGCAATCCAGGACATTATAAGTAGGATGGAGCAGGAGAAGAA 2072
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2073 TCCTATTGAAAGGACAAATTAAAATAGTAAATCCTCTCCTCTCCCTTCTGTAGGTACTAGCTGCCTTGATTTTT 2146
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2147 TTTTGTGGGTGGGGGGGATTTTTTCATTCCTTATTGAACTTATTTTGCACAATAGTGTTTACAAATCTTATACA 2220
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2221 TCTTACTTTGACAGAAGACTTATAATACCTTGTGGTCTTGAGACTGGTTGTCTCCTTTGCCTTTCTTCAAGGAT 2294
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2295 TTTCCTTTTTCTTTTTACCCCCCAGTGACCACTCTGCTCTTTAGGATTCTAGTGGCAGTATTCTTGTAACCTGT 2368
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2369 TAGACGTGGATATACCTCTTCAGGATGGCCTCCTTGCTGTCTTTATTGAAGAGCTGCCCACCCAGAGTCTTGAC 2442
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2443 TCTAGGGCAGGCTAGTGCTATTGTGGTGTCAGTTGATATTTAGTTTCATTTGCTGAACCCCAAATTTGAGTGTT 2516
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2517 AGTTAGGGAGCCTCCATTCTGTGGGAGAGTGTGGAAAGGCACTCTTTTTTCTCCATATTAGTTAACAAGAGGTG 2590
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2591 TCTTTAGGCCCTGGATGTTACCATCTCATTTGGTCAAGCCCCTGATACCTAGTTTCACATGGATGCTAACGTGG 2664
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2665 ATGTAATATAGTTGTGACAGCCTATGCACAAAAGCATTACCTGATCTTAAGGTTTGGTATTCTAACCAAAGTTG 2738
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2739 ACAGACTGTGCGTCTGTCTTAATGGATGTCTTAGGAGTTGGTTATTCTCTCTTTTTTTTTTGAGACGGAGTTTC 2812
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2813 GCTGTTGTTGCCCAGGCTGGAGTGCAATGGCGTATCTCCACTCACCACAACCTCCGCCTCCTGGGTTCAAGGGA 2886
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2887 TTCTCCTGTCTTAGCCTCCTGAGTAGCTGTGATTACAGGCATGCGCCACCATGCCTGGCTAATTTCATATTTTT 2960
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2961 TAGTAGAGACAGGATTTCTCCATGTTGGTCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCTGCCCACCTCG 3034
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3035 GCCTCCTAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCTGGCCGGTTATTCTCTCTTTACAGATAGCTAT 3108
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3109 AGACATCATTTTAGGAAGTGTTGCAGTCTGGCATTTGTGCTATTGTTCATTCTCTGTGAAGGCTGTTCATAGTT 3182
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3183 GCTATAGCCTGTGTTTAGTTTTGTGATTTCATCAATCCCATCTTTCTGTGTGAGTAATGCATTCTAAACATCCT 3256
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3257 ACCCCACTTTAGAAACGGACGTGGGGAACGCTTGGTCATTTAAGCCAACAATAAATTTAGGTGAATGTCCCTAA 3330
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3331 GTGTTTACTGTTTTTATCCAGTCAAGGATTTGCTTTTCCTTGAACATTTGTTTTAAATTCTGGGGCCAAAATGC 3404
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3405 AAAGGAGAAGTTCTATTCAAAGGCAGTAGTTGAAATCTATTATTTTAGTTAGCCTACTTGGCATTTACTACATC 3478
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3479 GGTCACTTCTCCAGGCTGCCCTAAATTAGGTTGATGGAGTGAGACATGCCAAACATCCACCTTTGGGACCATAG 3552
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3553 CATAGTTAAAATTAAATGTAGTTGGAATAGCTAGCATTGCAGCTACAGTAGGGAACTGTAGTCTAGTTCCCTAC 3626
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3627 AGAAAACCCAAGGAGTGAAGGGACAGGATTTTGCCTAGGCAAAAATCTAAGACTCGTGCCCTCCTGGTACATGG 3700
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3701 GGTTTTAAGACTGAATGTGTAATAGGAGCACTGCCTTTGCCAAATCAAATGAGTGACAGGTTAACTAGAAAATG 3774
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3775 TGACAATCACATTTCCTCTTAGCTCAAATAATTCTGTTTTTCCAAAGCTTTAGCAGCTTAATTAAATCTGTTGG 3848
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3849 ACTGGGGGAGGAGAGAGCTGTTCTCTAGTGGTTAACATGGTATTCTTTAAGAAGAAAAAACAAAGCCAAAGAAA 3922
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3923 ACTCATTATCTGGCATGTTCGCCTTAAAGATGGTACTGGGTAGAATCTGGAGTTTTCATCTCTTTTCAAAGCTG 3996
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3997 CATATCTCTTATATTTGGTATTGGCCTCTAAGTCTAATATTGCAGTTGGAATTCTTGCTGTATTATTTTTTAAG 4070
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4071 CAAGTGTTAGGTGCATTTAACTGCTTTCTTCATCCATGACGACATTCCCACCATGGGGGTCTTGACAAAGCAGA 4144
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4145 GTAAAAATATGCTGTTTACATTGTTTACTTACAAGTAAGGAGCCTGAAATAACCTGTAGTTTCGAATGCAGGCC 4218
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4219 CTGATTTACTGGCGTTGTCAGTTTCAATTATGAAACTGAAGTTTGGTGCCTCCTCTTTATCATGTTTTTTCCCT 4292
Query 1225 -------------------------------------------------------- 1224
Sbjct 4293 TGTAGCAGTTGTGTTTAATGTCATTAAAAAGAAATAAAAGTTCTTTGTCAGTGACA 4348
