Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_08866
Subject:
XR_946740.3
Aligned Length:
4348
Identities:
1223
Gaps:
3124

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACTGCTGGTTTGCCCTCCCCCTGGTGTTGGCCCGGCTGACTCGGGGTAGGGGAGGTCGGGGAGGGGGCGATAAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATGGCGCAGGGGGCGGAGTGAGGCGCAGTCGTTCGCCCAGGCTTTGGCCCGGCTTCCGGAGGAAGGTGGGAGTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AATCATTTTGACAAGTCTCCTGAAAGGAACAGCTAGCAGGAACTGAAACCTTTTTCCATTTGGTCTCGTGGCAA  222

Query    1  --------------------------------ATGATGTGCTCACGGGTGCCCTCTGAACAGTCTTCTGGTACC  42
                                            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AGGCAGAGATTGCTCCAGCAGCTCCACACAAAATGATGTGCTCACGGGTGCCCTCTGAACAGTCTTCTGGTACC  296

Query   43  TCTCTCTTGCCTAAAGACGGTGCCCCATTTTCTTGGGATTCCTTGGATGAGGATGGATTGGATGACTCCTTGCT  116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TCTCTCTTGCCTAAAGACGGTGCCCCATTTTCTTGGGATTCCTTGGATGAGGATGGATTGGATGACTCCTTGCT  370

Query  117  GGAGCTGTCAGAGGGAGAAGAAGATGATGGTGATGTAAATTACACAGAGGAAGAGATTGATGCACTGTTGAAGG  190
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GGAGCTGTCAGAGGGAGAAGAAGATGATGGTGATGTAAATTACACAGAGGAAGAGATTGATGCACTGTTGAAGG  444

Query  191  AAGATGACCCATCATATGAGCAGTCTTCTGGGGAAGATGATGGTGGGCATGTTGAGAAGGGAGAAAGAGGGAGT  264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AAGATGACCCATCATATGAGCAGTCTTCTGGGGAAGATGATGGTGGGCATGTTGAGAAGGGAGAAAGAGGGAGT  518

Query  265  CAAATTCTACTTGATACTCCCCGAGAGAAAAATTCATCGTACAGCCTGGGACCAGTAGCTGAGACTCCTGACCT  338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CAAATTCTACTTGATACTCCCCGAGAGAAAAATTCATCGTACAGCCTGGGACCAGTAGCTGAGACTCCTGACCT  592

Query  339  CTTCAAACTACCTCAGCTAAGTACATCAAGTGGTCATGGACCAGCTCATACTAAACCATTAAACAGACGCTCTG  412
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CTTCAAACTACCTCAGCTAAGTACATCAAGTGGTCATGGACCAGCTCATACTAAACCATTAAACAGACGCTCTG  666

Query  413  TACTAGAAAAGAATCTTATAAAAGTAACTGTTGCACCATTTAATCCAACAGTTTGTGATGCTCTGCTTGATAAG  486
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TACTAGAAAAGAATCTTATAAAAGTAACTGTTGCACCATTTAATCCAACAGTTTGTGATGCTCTGCTTGATAAG  740

Query  487  GACGAGACTGATTCGTCCAAAGATACTGAAAAACTCTCTTCCCTTGGAGAAGAGATGAGAGAAGATGGTCTTAG  560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GACGAGACTGATTCGTCCAAAGATACTGAAAAACTCTCTTCCCTTGGAGAAGAGATGAGAGAAGATGGTCTTAG  814

Query  561  CCCAAATGAAAGCAAACTTTGTACTGAATCTGAAGGGATCAGCCCCAATAACTCTGCCTGGAATGGGCCCCAGC  634
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CCCAAATGAAAGCAAACTTTGTACTGAATCTGAAGGGATCAGCCCCAATAACTCTGCCTGGAATGGGCCCCAGC  888

Query  635  TCTCTTCTTCAAACAATAACTTTCAACAGACTGTCTCTGATAAAAATATGCCTGACAGTGAGAACCCTACGTCT  708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TCTCTTCTTCAAACAATAACTTTCAACAGACTGTCTCTGATAAAAATATGCCTGACAGTGAGAACCCTACGTCT  962

Query  709  GTATTCTCTCGGATCTCAGACCATTCAGAGACTCCTAATATGGAGTTATCCTGCAGAAATGGTGGTTCACACAA  782
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GTATTCTCTCGGATCTCAGACCATTCAGAGACTCCTAATATGGAGTTATCCTGCAGAAATGGTGGTTCACACAA  1036

Query  783  GTCAAGTTGTGAAATGAGATCTCTGGTTGTTTCCACCTCATCAAACAAACAGGATGTTCTTAACAAGGATTCTG  856
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  GTCAAGTTGTGAAATGAGATCTCTGGTTGTTTCCACCTCATCAAACAAACAGGATGTTCTTAACAAGGATTCTG  1110

Query  857  GGAAGATGAAAGGCCATGAGAGAAGACTAGGCAAAGTCATTCCTGTTCTACAAACTAAGACCAGGACTAATGTT  930
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GGAAGATGAAAGGCCATGAGAGAAGACTAGGCAAAGTCATTCCTGTTCTACAAACTAAGACCAGGACTAATGTT  1184

Query  931  CCGACGTTTTCACAGTCAAATCTAGAACAGCAGAAGCAGCTTTATCTCAGGAGTGTCATTGCTCATATAGAAGA  1004
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CCGACGTTTTCACAGTCAAATCTAGAACAGCAGAAGCAGCTTTATCTCAGGAGTGTCATTGCTCATATAGAAGA  1258

Query 1005  CCCAGAGGACACTAACCAA----------------------------GGTATCTCGGGGGAGCTTTGTGCCTTG  1050
            |||||||||||||||||||                            |||||||||||||||||||||||||||
Sbjct 1259  CCCAGAGGACACTAACCAAGGATGAATCCCTAGAAGTGGAATTGCTGGGTATCTCGGGGGAGCTTTGTGCCTTG  1332

Query 1051  ATGGATCAAGTTCATCATATGCAGCACTCAAAATGGCAGCATCCTTCGGACCTCACCACGCGAAACTACGCCCG  1124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  ATGGATCAAGTTCATCATATGCAGCACTCAAAATGGCAGCATCCTTCGGACCTCACCACGCGAAACTACGCCCG  1406

Query 1125  CCGACAGAAACATCTGCAAAGATACAGTCTGACTCAGTGGGTTGACAGGAACATGCGAAGCCACCATCGGTTCC  1198
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CCGACAGAAACATCTGCAAAGATACAGTCTGACTCAGTGGGTTGACAGGAACATGCGAAGCCACCATCGGTTCC  1480

Query 1199  AGCGTCTCCCAGACTTCTCGTACAGA------------------------------------------------  1224
            |||||||||||||||||||||||||.                                                
Sbjct 1481  AGCGTCTCCCAGACTTCTCGTACAGTTAATTTGTGTCATCCCATCAGCAATGAAGGTCCCTATCCAGGGTCCTG  1554

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1555  CTTGGAGCAGCATTTCATGTTCTTTTGCTGTTTTGTGCTTTGCCGATTTTGGATTTTATTTTTCACAAAATTTT  1628

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1629  TATTTAAAAAACTCGTCACCTTTTGGAAATGCCCATTGCCGACTTGAATTTTTTTGTATGAAGTCCCTCCTGAT  1702

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1703  TTTGTGTGTGTGTGTCTGTGTTTAAGCAAGCGTTCGGTTGGTATAGTTTTTTTTTGTTTTTTTAATTTAAATTG  1776

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1777  AAGGTAGCTGCCTCCTGAAAGCCAGCATTAAGCCAGAACACCCAGGTTCAAGCAAAAGACCCACCTCTCTGCAG  1850

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1851  AGGCAAAGTCTACTTTCTGGTACCTCAAAGAAATCATTGTTCAATCTTCCATAAGGAAGAGATTCTTTACCAGG  1924

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1925  CTGTGAGCCAGTGTTAGATAACTTGTGAATGGATATAAGTTACTTTTAACAACCCCTCTTACTTTTTTATTTGA  1998

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1999  ATCCTCTGAATACCTGTCAGTATTTTAAAGTTGGCAATCCAGGACATTATAAGTAGGATGGAGCAGGAGAAGAA  2072

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2073  TCCTATTGAAAGGACAAATTAAAATAGTAAATCCTCTCCTCTCCCTTCTGTAGGTACTAGCTGCCTTGATTTTT  2146

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2147  TTTTGTGGGTGGGGGGGATTTTTTCATTCCTTATTGAACTTATTTTGCACAATAGTGTTTACAAATCTTATACA  2220

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2221  TCTTACTTTGACAGAAGACTTATAATACCTTGTGGTCTTGAGACTGGTTGTCTCCTTTGCCTTTCTTCAAGGAT  2294

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2295  TTTCCTTTTTCTTTTTACCCCCCAGTGACCACTCTGCTCTTTAGGATTCTAGTGGCAGTATTCTTGTAACCTGT  2368

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2369  TAGACGTGGATATACCTCTTCAGGATGGCCTCCTTGCTGTCTTTATTGAAGAGCTGCCCACCCAGAGTCTTGAC  2442

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2443  TCTAGGGCAGGCTAGTGCTATTGTGGTGTCAGTTGATATTTAGTTTCATTTGCTGAACCCCAAATTTGAGTGTT  2516

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2517  AGTTAGGGAGCCTCCATTCTGTGGGAGAGTGTGGAAAGGCACTCTTTTTTCTCCATATTAGTTAACAAGAGGTG  2590

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2591  TCTTTAGGCCCTGGATGTTACCATCTCATTTGGTCAAGCCCCTGATACCTAGTTTCACATGGATGCTAACGTGG  2664

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2665  ATGTAATATAGTTGTGACAGCCTATGCACAAAAGCATTACCTGATCTTAAGGTTTGGTATTCTAACCAAAGTTG  2738

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2739  ACAGACTGTGCGTCTGTCTTAATGGATGTCTTAGGAGTTGGTTATTCTCTCTTTTTTTTTTGAGACGGAGTTTC  2812

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2813  GCTGTTGTTGCCCAGGCTGGAGTGCAATGGCGTATCTCCACTCACCACAACCTCCGCCTCCTGGGTTCAAGGGA  2886

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2887  TTCTCCTGTCTTAGCCTCCTGAGTAGCTGTGATTACAGGCATGCGCCACCATGCCTGGCTAATTTCATATTTTT  2960

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2961  TAGTAGAGACAGGATTTCTCCATGTTGGTCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCTGCCCACCTCG  3034

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3035  GCCTCCTAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCTGGCCGGTTATTCTCTCTTTACAGATAGCTAT  3108

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3109  AGACATCATTTTAGGAAGTGTTGCAGTCTGGCATTTGTGCTATTGTTCATTCTCTGTGAAGGCTGTTCATAGTT  3182

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3183  GCTATAGCCTGTGTTTAGTTTTGTGATTTCATCAATCCCATCTTTCTGTGTGAGTAATGCATTCTAAACATCCT  3256

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3257  ACCCCACTTTAGAAACGGACGTGGGGAACGCTTGGTCATTTAAGCCAACAATAAATTTAGGTGAATGTCCCTAA  3330

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3331  GTGTTTACTGTTTTTATCCAGTCAAGGATTTGCTTTTCCTTGAACATTTGTTTTAAATTCTGGGGCCAAAATGC  3404

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3405  AAAGGAGAAGTTCTATTCAAAGGCAGTAGTTGAAATCTATTATTTTAGTTAGCCTACTTGGCATTTACTACATC  3478

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3479  GGTCACTTCTCCAGGCTGCCCTAAATTAGGTTGATGGAGTGAGACATGCCAAACATCCACCTTTGGGACCATAG  3552

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3553  CATAGTTAAAATTAAATGTAGTTGGAATAGCTAGCATTGCAGCTACAGTAGGGAACTGTAGTCTAGTTCCCTAC  3626

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3627  AGAAAACCCAAGGAGTGAAGGGACAGGATTTTGCCTAGGCAAAAATCTAAGACTCGTGCCCTCCTGGTACATGG  3700

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3701  GGTTTTAAGACTGAATGTGTAATAGGAGCACTGCCTTTGCCAAATCAAATGAGTGACAGGTTAACTAGAAAATG  3774

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3775  TGACAATCACATTTCCTCTTAGCTCAAATAATTCTGTTTTTCCAAAGCTTTAGCAGCTTAATTAAATCTGTTGG  3848

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3849  ACTGGGGGAGGAGAGAGCTGTTCTCTAGTGGTTAACATGGTATTCTTTAAGAAGAAAAAACAAAGCCAAAGAAA  3922

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3923  ACTCATTATCTGGCATGTTCGCCTTAAAGATGGTACTGGGTAGAATCTGGAGTTTTCATCTCTTTTCAAAGCTG  3996

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3997  CATATCTCTTATATTTGGTATTGGCCTCTAAGTCTAATATTGCAGTTGGAATTCTTGCTGTATTATTTTTTAAG  4070

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 4071  CAAGTGTTAGGTGCATTTAACTGCTTTCTTCATCCATGACGACATTCCCACCATGGGGGTCTTGACAAAGCAGA  4144

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 4145  GTAAAAATATGCTGTTTACATTGTTTACTTACAAGTAAGGAGCCTGAAATAACCTGTAGTTTCGAATGCAGGCC  4218

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 4219  CTGATTTACTGGCGTTGTCAGTTTCAATTATGAAACTGAAGTTTGGTGCCTCCTCTTTATCATGTTTTTTCCCT  4292

Query 1225  --------------------------------------------------------  1224
                                                                    
Sbjct 4293  TGTAGCAGTTGTGTTTAATGTCATTAAAAAGAAATAAAAGTTCTTTGTCAGTGACA  4348

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