Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_08879
Subject:
NM_001363426.1
Aligned Length:
2391
Identities:
1959
Gaps:
429

Alignment

Query    1  ATGGCGGCTCTGGCCTACAACCTGGGCAAGCGGGAGATCAACCACTACTTCAGCGTGAGGAGCGCCAAGGTGCT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GGCGCTGGTGGCCGTGCTGCTGCTCGCAGCGTGCCACCTCGCCTCCCGCCGCTACCGAGGCAATGATTCGTGTG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AATACCTTCTCTCAAGTGGCAGATTTCTTGGAGAGAAAGTTTGGCAACCTCACAGTTGTATGATGCATAAATAC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  AAAATCAGTGAAGCAAAGAACTGCCTTGTAGATAAACATATTGCATTTATTGGAGATTCCAGAATTCGTCAATT  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  GTTTTATTCTTTTGTAAAAATAATTAATCCCCAATTCAAAGAAGAAGGAAATAAGCATGAAAACATTCCTTTTG  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AAGACAAGACTGCATCAGTTAAAGTGGATTTTCTGTGGCATCCTGAAGTTAATGGTTCTATGAAACAGTGTATC  444
                                                                       |||||||||||||||
Sbjct    1  -----------------------------------------------------------ATGAAACAGTGTATC  15

Query  445  AAAGTGTGGACTGAGGATTCCATTGCAAAGCCACATGTGATTGTAGCAGGAGCTGCCACATGGTCCATCAAGAT  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   16  AAAGTGTGGACTGAGGATTCCATTGCAAAGCCACATGTGATTGTAGCAGGAGCTGCCACATGGTCCATCAAGAT  89

Query  519  TCACAATGGTAGCAGTGAAGCGCTTTCTCAATATAAAATGAACATCACCTCCATAGCACCACTTTTAGAAAAAT  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   90  TCACAATGGTAGCAGTGAAGCGCTTTCTCAATATAAAATGAACATCACCTCCATAGCACCACTTTTAGAAAAAT  163

Query  593  TGGCAAAGACTAGTGATGTTTATTGGGTCTTACAAGATCCTGTTTATGAAGATCTATTAAGTGAAAATAGGAAG  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  164  TGGCAAAGACTAGTGATGTTTATTGGGTCTTACAAGATCCTGTTTATGAAGATCTATTAAGTGAAAATAGGAAG  237

Query  667  ATGATCACTAATGAGAAGATAGATGCTTACAATGAAGCTGCAGTCAGTATTTTGAATAGTAGCACCAGAAATTC  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  ATGATCACTAATGAGAAGATAGATGCTTACAATGAAGCTGCAGTCAGTATTTTGAATAGTAGCACCAGAAATTC  311

Query  741  TAAATCAAATGTTAAGATGTTCAGTGTTTCCAAATTAATTGCTCAAGAAACCATCATGGAATCTTTGGATGGCT  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  312  TAAATCAAATGTTAAGATGTTCAGTGTTTCCAAATTAATTGCTCAAGAAACCATCATGGAATCTTTGGATGGCT  385

Query  815  TACATCTTCCTGAATCGAGCAGAGAAACTACTGCAATGATTCTTATGAATGTGTATTGCAATAAGATTTTGAAG  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  386  TACATCTTCCTGAATCGAGCAGAGAAACTACTGCAATGATTCTTATGAATGTGTATTGCAATAAGATTTTGAAG  459

Query  889  CCTGTAGATGGGTCCTGTTGTCAACCTCGGCCTCCTGTTACTCTCATACAGAAGCTAGCTGCTTGTTTTTTCAC  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  460  CCTGTAGATGGGTCCTGTTGTCAACCTCGGCCTCCTGTTACTCTCATACAGAAGCTAGCTGCTTGTTTTTTCAC  533

Query  963  TTTATCTATTATCGGATATTTAATTTTTTACATAATTCATCGTAATGCTCATCGGAAGAATAAGCCGTGTACTG  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  534  TTTATCTATTATCGGATATTTAATTTTTTACATAATTCATCGTAATGCTCATCGGAAGAATAAGCCGTGTACTG  607

Query 1037  ATTTGGAAAGTGGAGAGGAAAAGAAAAATATTATCAATACCCCTGTGTCTTCATTAGAAATACTTTTACAATCT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  608  ATTTGGAAAGTGGAGAGGAAAAGAAAAATATTATCAATACCCCTGTGTCTTCATTAGAAATACTTTTACAATCT  681

Query 1111  TTCTGCAAACTTGGCCTGATTATGGCATATTTCTATATGTGTGACAGTGCAAATCTGTTCATGAAGGAAAACAA  1184
            |||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||
Sbjct  682  TTCTGCAAACTTGGCCTGATTATGGCATATTTCTATATGTGTGACCGTGCAAATCTGTTCATGAAGGAAAACAA  755

Query 1185  ATTTTATACACATTCATCTTTCTTTATTCCAATTATCTACATTTTGGTTTTGGGAGTATTTTATAATGAAAATA  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  756  ATTTTATACACATTCATCTTTCTTTATTCCAATTATCTACATTTTGGTTTTGGGAGTATTTTATAATGAAAATA  829

Query 1259  CTAAAGAGACTAAAGTATTAAATAGAGAACAAACAGACGAATGGAAAGGCTGGATGCAACTTGTGATTTTGATT  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  830  CTAAAGAGACTAAAGTATTAAATAGAGAACAAACAGACGAATGGAAAGGCTGGATGCAACTTGTGATTTTGATT  903

Query 1333  TATCACATTTCTGGAGCAAGTACATTTTTGCCTGTATACATGCACATTCGAGTTCTGGTTGCTGCATATTTATT  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  904  TATCACATTTCTGGAGCAAGTACATTTTTGCCTGTATACATGCACATTCGAGTTCTGGTTGCTGCATATTTATT  977

Query 1407  TCAGACAGGGTATGGGCATTTCTCATACTTTTGGATAAAAGGAGATTTTGGAATCTACAGAGTATGTCAGGTTT  1480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct  978  TCAGACAGGGTATGGGCATTTCTCATACTTTTGGATAAAAGGAGATTTTGGAATCTATAGAGTATGTCAGGTTT  1051

Query 1481  TATTTCGTCTCAATTTCCTGGTAGTGGTGTTATGTATAGTAATGGATCGACCTTATCAATTCTATTACTTTGTC  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052  TATTTCGTCTCAATTTCCTGGTAGTGGTGTTATGTATAGTAATGGATCGACCTTATCAATTCTATTACTTTGTC  1125

Query 1555  CCCTTGGTCACTGTATGGTTCATGGTCATATATGTTACTTTAGCACTATGGCCACAAATAATCCAAAAAAAAGC  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126  CCCTTGGTCACTGTATGGTTCATGGTCATATATGTTACTTTAGCACTATGGCCACAAATAATCCAAAAAAAAGC  1199

Query 1629  AAACGGAAATTGTTTCTGGCATTTTGGCTTACTGTTGAAACTAGGCTTTTTGCTGTTATTCATATGTTTTTTGG  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200  AAACGGAAATTGTTTCTGGCATTTTGGCTTACTGTTGAAACTAGGCTTTTTGCTGTTATTCATATGTTTTTTGG  1273

Query 1703  CATATTCTCAGGGTGCATTTGAGAAGATCTTTTCTCTTTGGCCATTGTCCAAGTGTTTTGAACTGAAAGGGAAT  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274  CATATTCTCAGGGTGCATTTGAGAAGATCTTTTCTCTTTGGCCATTGTCCAAGTGTTTTGAACTGAAAGGGAAT  1347

Query 1777  GTATATGAATGGTGGTTCAGATGGAGGTTAGACCGTTATGTAGTTTTCCACGGAATGCTGTTTGCTTTTATTTA  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1348  GTATATGAATGGTGGTTCAGATGGAGGTTAGACCGTTATGTAGTTTTCCACGGAATGCTGTTTGCTTTTATTTA  1421

Query 1851  TCTGGCCTTGCAGAAGCGTCAAATACTTTCTGAAGGAAAGGGTGAACCTCTTTTTTCAAACAAAATTTCAAATT  1924
            ||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422  TCTGGCTTTGCAGAAGCGTCAAATACTTTCTGAAGGAAAGGGTGAACCTCTTTTTTCAAACAAAATTTCAAATT  1495

Query 1925  TTCTGTTGTTTATTTCAGTAGTTTCTTTCTTGACCTATTCCATCTGGGCTAGCAGTTGTAAAAACAAAGCAGAG  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496  TTCTGTTGTTTATTTCAGTAGTTTCTTTCTTGACCTATTCCATCTGGGCTAGCAGTTGTAAAAACAAAGCAGAG  1569

Query 1999  TGCAATGAACTCCATCCGTCTGTTTCTGTGGTACAGATTTTAGCCTTCATCCTAATAAGAAACATCCCTGGATA  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570  TGCAATGAACTCCATCCGTCTGTTTCTGTGGTACAGATTTTAGCCTTCATCCTAATAAGAAACATCCCTGGATA  1643

Query 2073  TGCCCGTTCAGTTTACAGTTCATTTTTTGCTTGGTTTGGAAAAATTTCATTAGAGCTATTTATTTGCCAGTATC  2146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644  TGCCCGTTCAGTTTACAGTTCATTTTTTGCTTGGTTTGGAAAAATTTCATTAGAGCTATTTATTTGCCAGTATC  1717

Query 2147  ACATATGGCTGGCAGCGGACACAAGGGGTATCTTGGTACTGATACCTGGAAACCCTATGCTCAACATCATTGTC  2220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1718  ACATATGGCTGGCAGCGGACACAAGGGGTATCTTGGTACTGATACCTGGAAACCCTATGCTCAACATCATTGTC  1791

Query 2221  AGCACTTTCATATTTGTTTGTGTGGCACATGAAATTTCTCAGATCACTAATGATCTTGCACAGATTATTATTCC  2294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792  AGCACTTTCATATTTGTTTGTGTGGCACATGAAATTTCTCAGATCACTAATGATCTTGCACAGATTATTATTCC  1865

Query 2295  TAAAGATAACTCATCTCTCTTGAAAAGGTTGGCATGTATAGCTGCATTTTTTTGTGGACTCCTCATCTTATCAT  2368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1866  TAAAGATAACTCATCTCTCTTGAAAAGGTTGGCATGTATAGCTGCATTTTTTTGTGGACTCCTCATCTTATCAT  1939

Query 2369  CCATTCAAGATAAATCAAAACAT  2391
            |||||||||||||||||||||||
Sbjct 1940  CCATTCAAGATAAATCAAAACAT  1962

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