Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09189
Subject:
NM_001318101.1
Aligned Length:
2007
Identities:
1345
Gaps:
660

Alignment

Query    1  ATGGCCATTGTGCAGACTCTGCCAGTGCCACTGGAGCCTGCTCCTGAAGCTGCCACTGCCCCACAAGCTCCAGT  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCCATTGTGCAGACTCTGCCAGTGCCACTGGAGCCTGCTCCTGAAGCTGCCACTGCCCCACAAGCTCCAGT  74

Query   75  CATGGGTAGTGTGAGCAGCCTTATCTCAGGCCGGCCCTGTCCCGGGGGGCCAGCTCCTCCCCGCCACCACGGCC  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CATGGGTAGTGTGAGCAGCCTTATCTCAGGCCGGCCCTGTCCCGGGGGGCCAGCTCCTCCCCGCCACCACGGCC  148

Query  149  CTCCTGGGCCCACCTTCTTCCGCCAGCAGGATGGCCTGCTACGGGGTGGCTATGAGGCACAGGAGCCGCTGTGC  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CTCCTGGGCCCACCTTCTTCCGCCAGCAGGATGGCCTGCTACGGGGTGGCTATGAGGCACAGGAGCCGCTGTGC  222

Query  223  CCAGCTGTGCCCCCTAGGAAGGCTGTCCCTGTCACCAGCTTCACCTACATCAATGAGGACTTCCGGACAGAGTC  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CCAGCTGTGCCCCCTAGGAAGGCTGTCCCTGTCACCAGCTTCACCTACATCAATGAGGACTTCCGGACAGAGTC  296

Query  297  ACCCCCCAGCCCAAGCAGTGATGTTGAGGATGCCCGAGAGCAGCGGGCACACAATGCCCACCTCCGCGGCCCAC  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ACCCCCCAGCCCAAGCAGTGATGTTGAGGATGCCCGAGAGCAGCGGGCACACAATGCCCACCTCCGCGGCCCAC  370

Query  371  CACCAAAGCTCATCCCTGTCTCTGGAAAGCTGGAGAAGAACATGGAGAAGATCCTGATCCGCCCAACAGCCTTC  444
            ||||||||||||||||||||||||||||||||||||                                      
Sbjct  371  CACCAAAGCTCATCCCTGTCTCTGGAAAGCTGGAGA--------------------------------------  406

Query  445  AAGCCAGTGCTGCCCAAACCTCGAGGGGCTCCGTCCCTGCCTAGCTTCATGGGTCCTCGGGCCACCGGGCTGTC  518
                                                                                      
Sbjct  407  --------------------------------------------------------------------------  406

Query  519  TGGGAGCCAGGGCAGCCTGACGCAGCTGTTTGGGGGCCCTGCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCAG  592
                                                                                      
Sbjct  407  --------------------------------------------------------------------------  406

Query  593  CTGCTGACAAACCCCTGGCATTTAGTGGCTGGGCCAGTGGCTGCCCATCAGGGACGCTATCCGACTCTGGCCGA  666
                                                                                      
Sbjct  407  --------------------------------------------------------------------------  406

Query  667  AACTCACTGTCCAGCCTGCCCACCTACAGCACCGGAGGTGCCGAGCCAACCACCAGCTCCCCAGGCGGGCACCT  740
                                                                                      
Sbjct  407  --------------------------------------------------------------------------  406

Query  741  GCCTTCCCATGGCTCTGGGCGAGGGGCACTGCCTGGGCCAGCCCGAGGGGTCCCTACTGGGCCCTCCCACTCAG  814
                                                                                      
Sbjct  407  --------------------------------------------------------------------------  406

Query  815  ACAGTGGCCGGTCCTCCTCCAGCAAGAGCACAGGCTCCCTAGGGGGCCGTTTGGCTGGGGGGCTTTTGGGCAGT  888
                                                                                      
Sbjct  407  --------------------------------------------------------------------------  406

Query  889  GGTACTCGGGCCTCCCCTGACAGCAGCTCCTGTGGGGAGCGCTCACCACCACCCCCGCCTCCACCTCCTTCGGA  962
                                                                                      
Sbjct  407  --------------------------------------------------------------------------  406

Query  963  TGAGGCCCTGCTGCACTGTGTCCTGGAAGGAAAGCTCCGAGACCGGGAGGCAGAGCTTCAGCAGCTGCGGGACA  1036
                                                                                      
Sbjct  407  --------------------------------------------------------------------------  406

Query 1037  GTCTGGACGAGAATGAGGCTACCATGTGCCAGGCATACGAGGAGCGGCAGCGGCACTGGCAGCGAGAGCGTGAG  1110
                                          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  407  ------------------------------AGGCATACGAGGAGCGGCAGCGGCACTGGCAGCGAGAGCGTGAG  450

Query 1111  GCCCTGCGAGAGGACTGTGCGGCCCAGGCACAGCGGGCACAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTT  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  451  GCCCTGCGAGAGGACTGTGCGGCCCAGGCACAGCGGGCACAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTT  524

Query 1185  CCAGCTGCAGCAGGAGAAGCGGCAATTGCAGGATGACTTCGCACAGCTGCTGCAGGAGCGCGAACAGCTGGAGC  1258
            |||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct  525  CCAGCTGCAGCAGGAGAAGCGGCAATTGCAGGACGACTTCGCACAGCTGCTGCAGGAGCGCGAACAGCTGGAGC  598

Query 1259  GGCGCTGCGCCACCTTGGAGCGGGAGCAGCGGGAGCTCGGGCCGAGGCTTGAGGAGACCAAGTGGGAGGTGTGC  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  599  GGCGCTGCGCCACCTTGGAGCGGGAGCAGCGGGAGCTCGGGCCGAGGCTTGAGGAGACCAAGTGGGAGGTGTGC  672

Query 1333  CAGAAATCAGGCGAGATCTCCCTGCTGAAGCAGCAGCTGAAAGAGTCTCAGGCAGAGCTGGTGCAGAAGGGCAG  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  673  CAGAAATCAGGCGAGATCTCCCTGCTGAAGCAGCAGCTGAAAGAGTCTCAGGCAGAGCTGGTGCAGAAGGGCAG  746

Query 1407  CGAGCTGGTGGCTCTGCGGGTGGCGCTGCGGGAGGCCCGTGCTACGCTGCGGGTCAGTGAGGGCCGTGCGCGGG  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  747  CGAGCTGGTGGCTCTGCGGGTGGCGCTGCGGGAGGCCCGTGCTACGCTGCGGGTCAGTGAGGGCCGTGCGCGGG  820

Query 1481  GTCTACAGGAGGCCGCCCGAGCTCGGGAGCTGGAGCTGGAAGCCTGTTCCCAGGAGCTGCAGCGACACCGCCAG  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  821  GTCTACAGGAGGCCGCCCGAGCTCGGGAGCTGGAGCTGGAAGCCTGTTCCCAGGAGCTGCAGCGACACCGCCAG  894

Query 1555  GAAGCTGAGCAGCTGCGGGAGAAAGCTGGGCAGTTGGATGCTGAGGCGGCCGGACTCCGGGAGCCCCCTGTGCC  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  895  GAAGCTGAGCAGCTGCGGGAGAAAGCTGGGCAGTTGGATGCTGAGGCGGCCGGACTCCGGGAGCCCCCTGTGCC  968

Query 1629  ACCTGCCACCGCTGACCCATTCCTCCTGGCGGAGAGTGATGAGGCCAAAGTGCAGCGGGCAGCAGCCGGGGTTG  1702
            ||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct  969  ACCTGCCACCGCTGACCCATTCCTCCTGGCAGAGAGTGATGAGGCCAAAGTGCAGCGGGCAGCAGCCGGGGTTG  1042

Query 1703  GGGGCAGCTTGCGGGCCCAGGTGGAGCGATTGCGGGTGGAGCTGCAGCGGGAGCGGCGGCGGGGTGAGGAGCAG  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043  GGGGCAGCTTGCGGGCCCAGGTGGAGCGATTGCGGGTGGAGCTGCAGCGGGAGCGGCGGCGGGGTGAGGAGCAG  1116

Query 1777  CGGGACAGCTTTGAGGGGGAGCGGCTGGCCTGGCAGGCAGAGAAGGAGCAGGTGATCCGCTACCAGAAGCAGCT  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117  CGGGACAGCTTTGAGGGGGAGCGGCTGGCCTGGCAGGCAGAGAAGGAGCAGGTGATCCGCTACCAGAAGCAGCT  1190

Query 1851  GCAGCACAACTACATCCAGATGTACCGGCGCAACCGGCAGCTAGAGCAGGAGCTGCAGCAGCTCAGCCTGGAGC  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191  GCAGCACAACTACATCCAGATGTACCGGCGCAACCGGCAGCTAGAGCAGGAGCTGCAGCAGCTCAGCCTGGAGC  1264

Query 1925  TGGAGGCCCGGGAGCTCGCTGACCTGGGCCTGGCCGAGCAGGCCCCCTGCATCTGCCTGGAGGAGATCACTGCT  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265  TGGAGGCCCGGGAGCTCGCTGACCTGGGCCTGGCCGAGCAGGCCCCCTGCATCTGCCTGGAGGAGATCACTGCT  1338

Query 1999  ACTGAGATC  2007
            |||||||||
Sbjct 1339  ACTGAGATC  1347

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