Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09195
Subject:
XM_017028107.1
Aligned Length:
2520
Identities:
1670
Gaps:
849

Alignment

Query    1  ATGAATGGAGAGTATAGAGGCAGAGGATTTGGACGAGGAAGATTTCAAAGCTGGAAAAGGGGAAGAGGTGGTGG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GAACTTCTCAGGAAAATGGAGAGAAAGAGAACACAGACCTGATCTGAGTAAAACCACAGGAAAACGTACTTCTG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AACAAACCCCACAGTTTTTGCTTTCAACAAAGACCCCACAGTCAATGCAGTCAACATTGGATCGATTCATACCA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TATAAAGGCTGGAAGCTTTATTTCTCTGAAGTTTACAGCGATAGCTCTCCTTTGATTGAGAAGATTCAAGCATT  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  TGAAAAATTTTTCACAAGGCATATTGATTTGTATGACAAGGATGAAATAGAAAGAAAGGGAAGTATTTTGGTAG  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  ATTTTAAAGAACTGACAGAAGGTGGTGAAGTAACTAACTTGATACCAGATATAGCAACTGAACTAAGAGATGCA  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  CCTGAGAAAACCTTGGCTTGCATGGGTTTGGCAATACATCAGGTGTTAACTAAGGACCTTGAAAGGCATGCAGC  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  TGAGTTACAAGCCCAGGAAGGATTGTCTAATGATGGAGAAACAATGGTAAATGTGCCACATATTCATGCAAGGG  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  TGTACAACTATGAGCCTTTGACACAGCTCAAGAATGTCAGAGCAAATTACTATGGAAAATACATTGCTCTAAGA  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  GGGACAGTGGTTCGTGTCAGTAATATAAAGCCTCTTTGCACCAAGATGGCTTTTCTTTGTGCTGCATGTGGAGA  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  AATTCAGAGCTTTCCTCTTCCAGATGGAAAATACAGTCTTCCCACAAAGTGTCCTGTGCCTGTGTGTCGAGGCA  814
                                   ||||||||||||||||||||||||||                         
Sbjct    1  -----------------------ATGGAAAATACAGTCTTCCCACAAAG-------------------------  26

Query  815  GGTCATTTACTGCTCTCCGCAGCTCTCCTCTCACAGTTACGATGGACTGGCAGTCAATCAAAATCCAGGAATTG  888
                                                                         |||||||||||||
Sbjct   27  -------------------------------------------------------------AATCCAGGAATTG  39

Query  889  ATGTCTGATGATCAGAGAGAAGCAGGTCGGATTCCACGAACAATAGAATGTGAGCTTGTTCATGATCTTGTGGA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   40  ATGTCTGATGATCAGAGAGAAGCAGGTCGGATTCCACGAACAATAGAATGTGAGCTTGTTCATGATCTTGTGGA  113

Query  963  TAGCTGTGTCCCGGGAGACACAGTGACTATTACTGGAATTGTCAAAGTCTCAAATGCGGAAGAAGGTTCTCGAA  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  114  TAGCTGTGTCCCGGGAGACACAGTGACTATTACTGGAATTGTCAAAGTCTCAAATGCGGAAGAAGGTTCTCGAA  187

Query 1037  ATAAGAATGACAAGTGTATGTTCCTTTTGTATATTGAAGCAAATTCTATTAGTAATAGCAAAGGACAGAAAACA  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  188  ATAAGAATGACAAGTGTATGTTCCTTTTGTATATTGAAGCAAATTCTATTAGTAATAGCAAAGGACAGAAAACA  261

Query 1111  AAGAGTTCTGAGGATGGGTGTAAGCATGGAATGTTGATGGAGTTCTCACTTAAAGACCTTTATGCCATCCAAGA  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  262  AAGAGTTCTGAGGATGGGTGTAAGCATGGAATGTTGATGGAGTTCTCACTTAAAGACCTTTATGCCATCCAAGA  335

Query 1185  GATTCAAGCTGAAGAAAACCTGTTTAAACTCATTGTCAACTCGCTTTGCCCTGTCATTTTTGGTCATGAACTTG  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  336  GATTCAAGCTGAAGAAAACCTGTTTAAACTCATTGTCAACTCGCTTTGCCCTGTCATTTTTGGTCATGAACTTG  409

Query 1259  TTAAAGCAGGTTTGGCATTAGCACTCTTTGGAGGAAGCCAGAAATACGCAGATGACAAAAACAGAATTCCAATT  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  410  TTAAAGCAGGTTTGGCATTAGCACTCTTTGGAGGAAGCCAGAAATACGCAGATGACAAAAACAGAATTCCAATT  483

Query 1333  CGGGGAGACCCCCACATCCTTGTTGTTGGAGATCCAGGCTTAGGAAAAAGTCAAATGCTACAGGCAGCGTGCAA  1406
            |||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct  484  CGGGGAGACCCCCACATCCTTGTTGTTGGAGATCCAGGCCTAGGAAAAAGTCAAATGCTACAGGCAGCGTGCAA  557

Query 1407  TGTTGCCCCACGTGGCGTGTATGTTTGTGGTAACACCACGACCACCTCTGGTCTGACGGTAACTCTTTCAAAAG  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  558  TGTTGCCCCACGTGGCGTGTATGTTTGTGGTAACACCACGACCACCTCTGGTCTGACGGTAACTCTTTCAAAAG  631

Query 1481  ATAGTTCCTCTGGAGATTTTGCTTTGGAAGCTGGTGCCCTGGTACTTGGTGATCAAGGTATTTGTGGAATCGAT  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  632  ATAGTTCCTCTGGAGATTTTGCTTTGGAAGCTGGTGCCCTGGTACTTGGTGATCAAGGTATTTGTGGAATCGAT  705

Query 1555  GAATTTGATAAGATGGGGAATCAACATCAAGCCTTGTTGGAAGCCATGGAGCAGCAAAGTATTAGTCTTGCTAA  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  706  GAATTTGATAAGATGGGGAATCAACATCAAGCCTTGTTGGAAGCCATGGAGCAGCAAAGTATTAGTCTTGCTAA  779

Query 1629  GGCTGGTGTGGTTTGTAGCCTTCCTGCAAGAACTTCCATTATTGCTGCTGCAAATCCAGTTGGAGGACATTACA  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  780  GGCTGGTGTGGTTTGTAGCCTTCCTGCAAGAACTTCCATTATTGCTGCTGCAAATCCAGTTGGAGGACATTACA  853

Query 1703  ATAAAGCCAAAACAGTTTCTGAGAATTTAAAAATGGGGAGTGCACTACTATCCAGATTTGATTTGGTCTTTATC  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  854  ATAAAGCCAAAACAGTTTCTGAGAATTTAAAAATGGGGAGTGCACTACTATCCAGATTTGATTTGGTCTTTATC  927

Query 1777  CTGTTAGATACTCCAAATGAGCATCATGATCACTTACTCTCTGAACATGTGATTGCAATAAGAGCTGGAAAGCA  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  928  CTGTTAGATACTCCAAATGAGCATCATGATCACTTACTCTCTGAACATGTGATTGCAATAAGAGCTGGAAAGCA  1001

Query 1851  GAGAACCATTAGCAGTGCCACAGTAGCTCGTATGAATAGTCAAGATTCAAATACTTCCGTACTTGAAGTAGTTT  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002  GAGAACCATTAGCAGTGCCACAGTAGCTCGTATGAATAGTCAAGATTCAAATACTTCCGTACTTGAAGTAGTTT  1075

Query 1925  CTGAGAAGCCATTATCAGAAAGACTAAAGGTGGTTCCTGGAGAAACAATAGATCCCATTCCCCACCAGCTATTG  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076  CTGAGAAGCCATTATCAGAAAGACTAAAGGTGGTTCCTGGAGAAACAATAGATCCCATTCCCCACCAGCTATTG  1149

Query 1999  AGAAAGTACATTGGCTATGCTCGGCAGTATGTGTACCCAAGGCTATCCACAGAAGCTGCTCGAGTTCTTCAAGA  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150  AGAAAGTACATTGGCTATGCTCGGCAGTATGTGTACCCAAGGCTATCCACAGAAGCTGCTCGAGTTCTTCAAGA  1223

Query 2073  TTTTTACCTTGAGCTCCGGAAACAGAGCCAGAGGTTAAATAGCTCACCAATCACTACCAGGCAGCTGGAATCTT  2146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224  TTTTTACCTTGAGCTCCGGAAACAGAGCCAGAGGTTAAATAGCTCACCAATCACTACCAGGCAGCTGGAATCTT  1297

Query 2147  TGATTCGTCTGACAGAGGCACGAGCAAGGTTGGAATTGAGAGAGGAAGCAACCAAAGAAGACGCTGAGGATATA  2220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298  TGATTCGTCTGACAGAGGCACGAGCAAGGTTGGAATTGAGAGAGGAAGCAACCAAAGAAGACGCTGAGGATATA  1371

Query 2221  GTGGAAATTATGAAATATAGCATGCTAGGAACTTACTCTGATGAATTTGGGAACCTAGATTTTGAGCGATCCCA  2294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372  GTGGAAATTATGAAATATAGCATGCTAGGAACTTACTCTGATGAATTTGGGAACCTAGATTTTGAGCGATCCCA  1445

Query 2295  GCATGGTTCTGGAATGAGCAACAGGTCAACAGCGAAAAGATTTATTTCTGCTCTCAACAACGTTGCTGAAAGAA  2368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446  GCATGGTTCTGGAATGAGCAACAGGTCAACAGCGAAAAGATTTATTTCTGCTCTCAACAACGTTGCTGAAAGAA  1519

Query 2369  CTTATAATAATATATTTCAATTTCATCAACTTCGGCAGATTGCCAAAGAACTAAACATTCAGGTTGCTGATTTT  2442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520  CTTATAATAATATATTTCAATTTCATCAACTTCGGCAGATTGCCAAAGAACTAAACATTCAGGTTGCTGATTTT  1593

Query 2443  GAAAATTTTATTGGATCACTAAATGACCAGGGTTACCTCTTGAAAAAAGGCCCAAAAGTTTACCAGCTTCAAAC  2516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1594  GAAAATTTTATTGGATCACTAAATGACCAGGGTTACCTCTTGAAAAAAGGCCCAAAAGTTTACCAGCTTCAAAC  1667

Query 2517  TATG  2520
            ||||
Sbjct 1668  TATG  1671

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