Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_09195
- Subject:
- XR_374505.2
- Aligned Length:
- 2866
- Identities:
- 1241
- Gaps:
- 1436
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCGTGGCTTCCTTAAGCAGAAGCGCGTCATAGACGCGCCAAAAAAGAACTTCAAGCGAGGTCCGAGTTTGCCTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTGGGCTTGTGCTCGGCCTTCCCCGCCCTGCGTCTGGCGTTCTGGCGCGCAGTGACGCGGGCACCGGGCGGCTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGGAGACGGAGTGTCCGCGGAGCCCTGCGTGAGAGTGTATACGGCTTACGGCTCTGTCGCAGGCTCCGGGGCTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTGAAAGCAGGACGCGAGGAAGACGGGGAGTCAGGGATTGCGTACGACTTTTCTCAGGCTGCTTCCCTATGTAG 296
Query 1 ------------------------------------------------ATGAATGGAGAGTATAGAGGCAGAGG 26
||||.|||.|..||||||||||||||
Sbjct 297 ATGTTGGAATCGCCACCGTTCTCAGAGTGCTCTTGACTTGTGGAAGACATGAGTGGTGCTTATAGAGGCAGAGG 370
Query 27 ATTTGGACGAGGAAGATTTCAAAGCTGGAAAAGGGGAAGAGGTGGTGGGAACTTCTCAGGAAAATGGAGAGAAA 100
.|||||||||||||||||.||||||||||||||.||||||||||||||||||||||||||||..||||||||||
Sbjct 371 TTTTGGACGAGGAAGATTCCAAAGCTGGAAAAGAGGAAGAGGTGGTGGGAACTTCTCAGGAAGGTGGAGAGAAA 444
Query 101 GAGAACACAGACCTGATCTGAGTAAAACCACAGGAAA--ACGTACTTCTGAACAAACCCCACAGTTTTTGCTTT 172
|||||.|||||..|||.||||.|.||.|..||||||| ||| ||||||.||||.||.||||....||.| ||
Sbjct 445 GAGAAAACAGAGTTGACCTGAATGAAGCTTCAGGAAAGCACG--CTTCTGCACAAGCCTCACAACCGTTAC-TT 515
Query 173 CAACAAAGACCCCACAGTCAATGCAGTCAACATTGGATCGATTCATACCATATAAAGGCTGGAAGCTTTATTTC 246
||| ||||||||||||||||..||.||.||.|||||.||||||||||||||.|||
Sbjct 516 CAA--------------------CAGTCAACATTGGATCAGTTTATCCCGTATAAGGGCTGGAAGCTTTACTTC 569
Query 247 TCTGAAGTTTACAGCGATAGCTCTCCTTTGATTGAGAAGATTCAAGCATTTGAAAAATTTTTCACAAGGCATAT 320
||||||||||||||..|||.||||||.||.|||||||||||||||||||||||.||||||||||||||||||||
Sbjct 570 TCTGAAGTTTACAGTAATAACTCTCCCTTTATTGAGAAGATTCAAGCATTTGAGAAATTTTTCACAAGGCATAT 643
Query 321 TGATTTGTATGACAAGGATGAAATAGAAAGAAAGGGAAGTATTTTGGTAGATTTTAAAGAACTGACAGAAGGTG 394
.||.||.||.||.||||||||||||||||||||.|||||.||||||||.||||||||||||||||||.|||.||
Sbjct 644 CGACTTATACGATAAGGATGAAATAGAAAGAAAAGGAAGCATTTTGGTGGATTTTAAAGAACTGACAAAAGCTG 717
Query 395 GTGAAGTAACTAACTTGATACCAGATATAGCAACTGAACTAAGAGATGCACCTGAGAAAACCTTGGCTTGCATG 468
.||||.||||||||||||||||.|||||||.||..|.||||||||||||.|||||||||||..||||.||.|||
Sbjct 718 ATGAAATAACTAACTTGATACCCGATATAGAAAACGCACTAAGAGATGCCCCTGAGAAAACACTGGCGTGTATG 791
Query 469 GGTTTGGCAATACATCAGGTGTTAACTAAGGACCTTGAAAGGCATGCAGCTGAGTTACAAGCCCAGGAAGGATT 542
||..||||||||||||||||.||||||||||||||||||||||||||.||.||.||||||||.||.||.|||||
Sbjct 792 GGGCTGGCAATACATCAGGTATTAACTAAGGACCTTGAAAGGCATGCCGCCGAATTACAAGCTCAAGAGGGATT 865
Query 543 GTCTAATGATGGAGAAACAATGGTAAATGTGCCACATATTCATGCAAGGGTGTACAACTATGAGCCTTTGACAC 616
||||||.|.||||||.||||||||||||||.|||||||||.|||||||.|||||||||||||||||.|||||||
Sbjct 866 GTCTAACGGTGGAGAGACAATGGTAAATGTACCACATATTTATGCAAGAGTGTACAACTATGAGCCCTTGACAC 939
Query 617 AGCTCAAGAATGTCAGAGCAAATTACTATGGAAAATACATTGCTCTAAGAGGGACAGTGGTTCGTGTCAGTAAT 690
|.|||||||||.||.||||||.||.||||||.||||||||..||.||.|||||||.|||||.||.|||||.||.
Sbjct 940 ACCTCAAGAATATCCGAGCAACTTGCTATGGGAAATACATCTCTATACGAGGGACTGTGGTCCGGGTCAGCAAC 1013
Query 691 ATAAAGCCTCTTTGCACCAAGATGGCTTTTCTTTGTGCTGCATGTGGAGAAATTCAGAGCTTTCCTCTTCCAGA 764
||||||||||||||||||||.||||||||||..||.||||||||||||||.|||||||||||||||||.|||||
Sbjct 1014 ATAAAGCCTCTTTGCACCAACATGGCTTTTCAGTGCGCTGCATGTGGAGAGATTCAGAGCTTTCCTCTGCCAGA 1087
Query 765 TGGAAAATACAGTCTTCCCACAAAGTGTCCTGTGCCTGTGTGTCGAGGCAGGTCATTTACTGCTCTCCGCAGCT 838
|||||||||||..|||||.|||||||||||||||||||.|||.|||||.|||||||||.||.|.||.|||||||
Sbjct 1088 TGGAAAATACACCCTTCCTACAAAGTGTCCTGTGCCTGCGTGCCGAGGGAGGTCATTTGCTCCACTGCGCAGCT 1161
Query 839 CTCCTCTCACAGTTACGATGGACTGGCAGTCAATCAAAATCCAGGAATTGATGTCTGATGATCAGAGAGAAGCA 912
||||||||||||||||..||||||||||||..||||||||||||||..||||||||||||..|||||||||||.
Sbjct 1162 CTCCTCTCACAGTTACACTGGACTGGCAGTTGATCAAAATCCAGGAGCTGATGTCTGATGCACAGAGAGAAGCT 1235
Query 913 GGTCGGATTCCACGAACAATAGAATGTGAGCTTGTTCATGATCTTGTGGATAGCTGTGTCCCGGGAGACACAGT 986
||||||||.||.||.||.|||||||||||.||||||||.||||||||.|||||.||||||||.|||||.|||||
Sbjct 1236 GGTCGGATCCCTCGGACGATAGAATGTGAACTTGTTCACGATCTTGTAGATAGTTGTGTCCCAGGAGATACAGT 1309
Query 987 GACTATTACTGGAATTGTCAAAGTCTCAAATGCGGAAGAAGGTTCTCGAAATAAGAATGACAAGTGTATGTTCC 1060
||||.||||||||||||||||||||||.|||.|.||||||||||||||||||||||||||.|||||.|||||||
Sbjct 1310 GACTGTTACTGGAATTGTCAAAGTCTCCAATTCTGAAGAAGGTTCTCGAAATAAGAATGATAAGTGCATGTTCC 1383
Query 1061 TTTTGTATATTGAAGCAAATTCTATTAGTAATAGCAAAGGACAGAAAACAAAGAGTTCTGAGGATGGGTGTAAG 1134
|||||||.|||||.|||||||||.||||.||.|||||.||.|.||||.||.|||.|.|.||.|||||.||.|||
Sbjct 1384 TTTTGTACATTGAGGCAAATTCTGTTAGCAACAGCAAGGGGCCGAAAGCACAGACTGCAGAAGATGGTTGCAAG 1457
Query 1135 CATGGAATGTTGATGGAGTTCTCACTTAAAGACCTTTATGCCATCCAAGAGATTCAAGCTGAAGAAAACCTGTT 1208
|||||.|...|||||||||||||.|||||||||||.||||||||||.||||||.||.||||||||.||||||.|
Sbjct 1458 CATGGGACACTGATGGAGTTCTCCCTTAAAGACCTCTATGCCATCCGAGAGATCCAGGCTGAAGAGAACCTGCT 1531
Query 1209 TAAACTCATTGTCAACTCGCTTTGCCCTGTCATTTTTGGTCATGAACTTGTTAAAGCAGGTTTGGCATTAGCAC 1282
.||.|||.|||||||
Sbjct 1532 CAAGCTCGTTGTCAA----------------------------------------------------------- 1546
Query 1283 TCTTTGGAGGAAGCCAGAAATACGCAGATGACAAAAACAGAATTCCAATTCGGGGAGACCCCCACATCCTTGTT 1356
Sbjct 1547 -------------------------------------------------------------------------- 1546
Query 1357 GTTGGAGATCCAGGCTTAGGAAAAAGTCAAATGCTACAGGCAGCGTGCAATGTTGCCCCACGTGGCGTGTATGT 1430
|||||.|||||.||.||.||||||||.||||||||
Sbjct 1547 ---------------------------------------GCAGCATGCAACGTGGCGCCACGTGGTGTGTATGT 1581
Query 1431 TTGTGGTAACACCACGACCACCTCTGGTCTGACGGTAACTCTTTCAAAAGATAGTTCCTCTGGAGATTTTGCTT 1504
||||||.||.|||||.||||.|||||||||.||.||.|||||||||||.||.||||||||||||||||||||||
Sbjct 1582 TTGTGGAAATACCACCACCAGCTCTGGTCTCACTGTGACTCTTTCAAAGGACAGTTCCTCTGGAGATTTTGCTT 1655
Query 1505 TGGAAGCTGGTGCCCTGGTACTTGGTGATCAAGGTATTTGTGGAATCGATGAATTTGATAAGATGGGGAATCAA 1578
||||||||||||||||.|||||||||||.|||||.||.||||||||.||||||||||||||.||||||||.|||
Sbjct 1656 TGGAAGCTGGTGCCCTTGTACTTGGTGACCAAGGCATCTGTGGAATAGATGAATTTGATAAAATGGGGAACCAA 1729
Query 1579 CATCAAGCCTTGTTGGAAGCCATGGAGCAGCAAAGTATTAGTCTTGCTAAGGCTGGTGTGGTTTGTAGCCTTCC 1652
|||||||||.||||.|||||||||||.|||||.||||||||.|||||
Sbjct 1730 CATCAAGCCCTGTTAGAAGCCATGGAACAGCAGAGTATTAGCCTTGC--------------------------- 1776
Query 1653 TGCAAGAACTTCCATTATTGCTGCTGCAAATCCAGTTGGAGGACATTACAATAAAGCCAAAACAGTTTCTGAGA 1726
Sbjct 1777 -------------------------------------------------------------------------- 1776
Query 1727 ATTTAAAAATGGGGAGTGCACTACTATCCAGATTTGATTTGGTCTTTATCCTGTTAGATACTCCAAATGAGCAT 1800
Sbjct 1777 -------------------------------------------------------------------------- 1776
Query 1801 CATGATCACTTACTCTCTGAACATGTGATTGCAATAAGAGCTGGAAAGCAGAGAACCATTAGCAGTGCCACAGT 1874
Sbjct 1777 -------------------------------------------------------------------------- 1776
Query 1875 AGCTCGTATGAATAGTCAAGATTCAAATACTTCCGTACTTGAAGTAGTTTCTGAGAAGCCATTATCAGAAAGAC 1948
Sbjct 1777 -------------------------------------------------------------------------- 1776
Query 1949 TAAAGGTGGTTCCTGGAGAAACAATAGATCCCATTCCCCACCAGCTATTGAGAAAGTACATTGGCTATGCTCGG 2022
Sbjct 1777 -------------------------------------------------------------------------- 1776
Query 2023 CAGTATGTGTACCCAAGGCTATCCACAGAAGCTGCTCGAGTTCTTCAAGATTTTTACCTTGAGCTCCGGAAACA 2096
Sbjct 1777 -------------------------------------------------------------------------- 1776
Query 2097 GAGCCAGAGGTTAAATAGCTCACCAATCACTACCAGGCAGCTGGAATCTTTGATTCGTCTGACAGAGGCACGAG 2170
Sbjct 1777 -------------------------------------------------------------------------- 1776
Query 2171 CAAGGTTGGAATTGAGAGAGGAAGCAACCAAAGAAGACGCTGAGGATATAGTGGAAATTATGAAATATAGCATG 2244
Sbjct 1777 -------------------------------------------------------------------------- 1776
Query 2245 CTAGGAACTTACTCTGATGAATTTGGGAACCTAGATTTTGAGCGATCCCAGCATGGTTCTGGAATGAGCAACAG 2318
Sbjct 1777 -------------------------------------------------------------------------- 1776
Query 2319 GTCAACAGCGAAAAGATTTATTTCTGCTCTCAACAACGTTGCTGAAAGAACTTATAATAATATATTTCAATTTC 2392
Sbjct 1777 -------------------------------------------------------------------------- 1776
Query 2393 ATCAACTTCGGCAGATTGCCAAAGAACTAAACATTCAGGTTGCTGATTTTGAAAATTTTATTGGATCACTAAAT 2466
Sbjct 1777 -------------------------------------------------------------------------- 1776
Query 2467 GACCAGGGTTACCTCTTGAAAAAAGGCCCAAAAGTTTACCAGCTTCAAACTATG 2520
Sbjct 1777 ------------------------------------------------------ 1776
