Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_09257
• Subject: XR_001748014.2
• Aligned Length: 1544
• Identities: 996
• Gaps: 518

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGTGTGAGCAAGAATTTCCTGCGGTTCCTCTAGGAAAATTCCTTTGTGCAGATCAGGCCCGTGGATTGGTGAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGAATCCTAACCACGTCTTCCCTGGCCTGTCTTCACTCTTCTCCCCAGAATCACCACTTCTGCACTGGTGTCTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAGGTGTATTGAGTGATTTTGTGGAGGGCAGAAGTAGGAAGTCTTTGGGACAAAACTGTATTTACCTTGGGATC  222

Query    1  --------------------------------------------------------ATGGCTTCTGGAATCCTG  18
                                                                    ||||||||||||||||||
Sbjct  223  TGTGAACAAGAGGAACCTCAGCAGCCAGGACAGGCAGGAGCAGTGGAATAGCTACTATGGCTTCTGGAATCCTG  296

Query   19  GTTAATGTAAAGGAGGAGGTGACCTGCCCCATCTGCCTGGAACTCCTGACACAACCCCTGAGCCTGGACTGCGG  92
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GTTAATGTAAAGGAGGAGGTGACCTGCCCCATCTGCCTGGAACTCCTGACACAACCCCTGAGCCTGGACTGCGG  370

Query   93  CCACAGCTTCTGCCAAGCATGCCTCACTGCAAACCACAAGAAGTCCATGCTAGACAAAGGAGAGAGTAGCTGCC  166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCACAGCTTCTGCCAAGCATGCCTCACTGCAAACCACAAGAAGTCCATGCTAGACAAAGGAGAGAGTAGCTGCC  444

Query  167  CTGTGTGCCGGATCAGTTACCAGCCTGAGAACATACGGCCTAATCGGCATGTAGCCAACATAGTGGAGAAGCTC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CTGTGTGCCGGATCAGTTACCAGCCTGAGAACATACGGCCTAATCGGCATGTAGCCAACATAGTGGAGAAGCTC  518

Query  241  AGGGAGGTCAAGTTGAGCCCAGAGGGGCAGAAAGTTGATCATTGTGCACGCCATGGAGAGAAACTTCTACTCTT  314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AGGGAGGTCAAGTTGAGCCCAGAGGGGCAGAAAGTTGATCATTGTGCACGCCATGGAGAGAAACTTCTACTCTT  592

Query  315  CTGTCAGGAGGACGGGAAGGTCATTTGCTGGCTTTGTGAGCGGTCTCAGGAGCACCGTGGTCACCACACGTTCC  388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CTGTCAGGAGGACGGGAAGGTCATTTGCTGGCTTTGTGAGCGGTCTCAGGAGCACCGTGGTCACCACACGTTCC  666

Query  389  TCACAGAGGAGGTTGCCCGGGAGTACCAAGTGAAGCTCCAGGCAGCTCTGGAGATGCTGAGGCAGAAGCAGCAG  462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TCACAGAGGAGGTTGCCCGGGAGTACCAAGTGAAGCTCCAGGCAGCTCTGGAGATGCTGAGGCAGAAGCAGCAG  740

Query  463  GAAGCTGAAGAGTTGGAAGCTGACATCAGAGAAGAGAAAGCTTCCTGGAAGACTCAAATACAGTATGACAAAAC  536
            ||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GAAGCTGAAGAGTTAGAAGCTGACATCAGAGAAGAGAAAGCTTCCTGGAAGACTCAAATACAGTATGACAAAAC  814

Query  537  CAACGTCTTGGCAGATTTTGAGCAACTGAGAGACATCCTGGACTGGGAGGAGAGCAATGAGCTGCAAAACCTGG  610
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CAACGTCTTGGCAGATTTTGAGCAACTGAGAGACATCCTGGACTGGGAGGAGAGCAATGAGCTGCAAAACCTGG  888

Query  611  AGAAGGAGGAGGAAGACATTCTGAAAAGCCTTACGAACTCTGAAACTGAGATGGTGCAGCAGACCCAGTCCCTG  684
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AGAAGGAGGAGGAAGACATTCTGAAAAGCCTTACGAACTCTGAAACTGAGATGGTGCAGCAGACCCAGTCCCTG  962

Query  685  AGAGAGCTCATCTCAGATCTGGAGCATCGGCTGCAGGGGTCAGTGATGGAGCTGCTTCAGGGTGTGGATGGCGT  758
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  AGAGAGCTCATCTCAGATCTGGAGCATCGGCTGCAGGGGTCAGTGATGGAGCTGCTTCAGGGTGTGGATGGCGT  1036

Query  759  CATAAAAAGGACGGAGAACGTGACCTTGAAGAAGCCAGAAACTTTTCCAAAAAATCAAAGGAGAGTGTTTCGAG  832
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CATAAAAAGGACGGAGAACGTGACCTTGAAGAAGCCAGAAACTTTTCCAAAAAATCAAAGGAGAGTGTTTCGAG  1110

Query  833  CTCCTGATCTGAAAGGAATGCTAGAAGTGTTTAGAGAGCTGACAGATGTCCGACGCTACTGGGGTAAG------  900
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||      
Sbjct 1111  CTCCTGATCTGAAAGGAATGCTAGAAGTGTTTAGAGAGCTGACAGATGTCCGACGCTACTGGG--AAGACTAGA  1182

Query  901  -GAGA-------------AGTCACA--------------TTATCATAAGCCACCCTGCGGC-------------  933
             ||||             .||||||              |.|||||.||         |||             
Sbjct 1183  TGAGATGAAGAGAGCAGTTGTCACATCTGGGTAAAAGTCTCATCATCAG---------GGCAAAGAACAGGTGG  1247

Query  934  ----TTATC------AT-----TATTATTATC-----TTTATCTTT---TAGAATT-----------------T  967
                .||||      ||     ||..||.|.|     |..|.||||   ||||.||                 .
Sbjct 1248  GAATGTATCCAGAGAATCAACATACAATGAGCAAAAGTGAAGCTTTTCCTAGACTTGACCCTCATCAAATCTCC  1321

Query  968  TATGT------TCTCT-----ATTAGG------CTCATG------TTTTAAGATTTATGATTCTC---------  1009
            |.|||      |||||     |..|||      ||.|||      |.|.|||.||..|||..|||         
Sbjct 1322  TCTGTCCCCACTCTCTTCTGAAGAAGGAAAGGTCTGATGAATACATGTAAAGCTTATTGAGCCTCAGAACTCTA  1395

Query 1010  --------CTTCCAAGA-CACACATAACTTACC-------------------------CCTCCTTA--------  1041
                    .||.|||.| ||||.| ||||   |                         |||||.||        
Sbjct 1396  ACTACAGGGTTTCAATAGCACAGA-AACT---CTGAGAAGAAAAAGAATGTCAAAGTTCCTCCCTAAGGAGACT  1465

Query 1042  ----------------------------------------------------------------  1041
                                                                            
Sbjct 1466  GATTAGATGCAAGTGTGTCCGGAATTGGTGGGTTCTTGGTCTGACTTCAAGAATGAAGCCGCGG  1529