Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_09257
- Subject:
- XR_001748016.2
- Aligned Length:
- 3247
- Identities:
- 958
- Gaps:
- 2259
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTTATCTTTCACTTTCCTGCCCTGAGTGTGAGCAAGAATTTCCTGCGGTTCCTCTAGGAAAATTCCTTTGTGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGATCAGGCCCGTGGATTGGGATCTGTGAACAAGAGGAACCTCAGCAGCCAGGACAGGCAGGAGCAGTGGAATA 148
Query 1 ------ATGGCTTCTGGAATCCTGGTTAATGTAAAGGAGGAGGTGACCTGCCCCATCTGCCTGGAACTCCTGAC 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GCTACTATGGCTTCTGGAATCCTGGTTAATGTAAAGGAGGAGGTGACCTGCCCCATCTGCCTGGAACTCCTGAC 222
Query 69 ACAACCCCTGAGCCTGGACTGCGGCCACAGCTTCTGCCAAGCATGCCTCACTGCAAACCACAAGAAGTCCATGC 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ACAACCCCTGAGCCTGGACTGCGGCCACAGCTTCTGCCAAGCATGCCTCACTGCAAACCACAAGAAGTCCATGC 296
Query 143 TAGACAAAGGAGAGAGTAGCTGCCCTGTGTGCCGGATCAGTTACCAGCCTGAGAACATACGGCCTAATCGGCAT 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TAGACAAAGGAGAGAGTAGCTGCCCTGTGTGCCGGATCAGTTACCAGCCTGAGAACATACGGCCTAATCGGCAT 370
Query 217 GTAGCCAACATAGTGGAGAAGCTCAGGGAGGTCAAGTTGAGCCCAGAGGGGCAGAAAGTTGATCATTGTGCACG 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GTAGCCAACATAGTGGAGAAGCTCAGGGAGGTCAAGTTGAGCCCAGAGGGGCAGAAAGTTGATCATTGTGCACG 444
Query 291 CCATGGAGAGAAACTTCTACTCTTCTGTCAGGAGGACGGGAAGGTCATTTGCTGGCTTTGTGAGCGGTCTCAGG 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCATGGAGAGAAACTTCTACTCTTCTGTCAGGAGGACGGGAAGGTCATTTGCTGGCTTTGTGAGCGGTCTCAGG 518
Query 365 AGCACCGTGGTCACCACACGTTCCTCACAGAGGAGGTTGCCCGGGAGTACCAAGTGAAGCTCCAGGCAGCTCTG 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AGCACCGTGGTCACCACACGTTCCTCACAGAGGAGGTTGCCCGGGAGTACCAAGTGAAGCTCCAGGCAGCTCTG 592
Query 439 GAGATGCTGAGGCAGAAGCAGCAGGAAGCTGAAGAGTTGGAAGCTGACATCAGAGAAGAGAAAGCTTCCTGGAA 512
||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 593 GAGATGCTGAGGCAGAAGCAGCAGGAAGCTGAAGAGTTAGAAGCTGACATCAGAGAAGAGAAAGCTTCCTGGAA 666
Query 513 GACTCAAATACAGTATGACAAAACCAACGTCTTGGCAGATTTTGAGCAACTGAGAGACATCCTGGACTGGGAGG 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GACTCAAATACAGTATGACAAAACCAACGTCTTGGCAGATTTTGAGCAACTGAGAGACATCCTGGACTGGGAGG 740
Query 587 AGAGCAATGAGCTGCAAAACCTGGAGAAGGAGGAGGAAGACATTCTGAAAAGCCTTACGAACTCTGAAACTGAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGAGCAATGAGCTGCAAAACCTGGAGAAGGAGGAGGAAGACATTCTGAAAAGCCTTACGAACTCTGAAACTGAG 814
Query 661 ATGGTGCAGCAGACCCAGTCCCTGAGAGAGCTCATCTCAGATCTGGAGCATCGGCTGCAGGGGTCAGTGATGGA 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 ATGGTGCAGCAGACCCAGTCCCTGAGAGAGCTCATCTCAGATCTGGAGCATCGGCTGCAGGGGTCAGTGATGGA 888
Query 735 GCTGCTTCAGGGTGTGGATGGCGTCATAAAAAGGACGGAGAACGTGACCTTGAAGAAGCCAGAAACTTTTCCAA 808
|||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GCTGCTTC-----------------------AGGACGGAGAACGTGACCTTGAAGAAGCCAGAAACTTTTCCAA 939
Query 809 AAAATCAAAGGAGAGTGTTTCGAGCTCCTGATCTGAAAGGAATGCTAGAAGTGTTTAGAGAGCTGACAGATGTC 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 AAAATCAAAGGAGAGTGTTTCGAGCTCCTGATCTGAAAGGAATGCTAGAAGTGTTTAGAGAGCTGACAGATGTC 1013
Query 883 CGACGCTACTGGGGTAAGGAGA-AGT----------CACATTATCATAAGCCACCCTGCGGCTTATCATTATTA 945
|||||||||||||.|.|.|.|| ||| .||||| ||||..|| |.|||||
Sbjct 1014 CGACGCTACTGGGTTGATGTGACAGTGGCTCCAAACAACATT-TCATGTGC------------TGTCATT---- 1070
Query 946 TTATCTTTATCTTTTAGAATTTTA--------TGTTCTC-------------------TATTAGGCTCATGTTT 992
||| |||..|.| ||..||| |||..|||.|..|...
Sbjct 1071 ---TCT----------GAAGATAAGAGACAAGTGAGCTCTCCGAAACCACAGATAATATATGGGGCACGAGGGA 1131
Query 993 TAAG---------ATTTATGA--TTC----------------TCCT------TCCAAGACACACAT------AA 1027
.||| ||||.||| ||| |||| ||.|||...||||| ||
Sbjct 1132 CAAGATACCAGACATTTGTGAATTTCAATTATTGTACTGGCATCCTGGGCTCTCAAAGTATCACATCAGGGAAA 1205
Query 1028 C-TTAC----------------CC-------CTCCTTA------------------------------------ 1041
| |||| || ||.|||.
Sbjct 1206 CATTACTGGGAGGTAGACGTGTCCAAGAAAACTGCTTGGATCCTGGGGGTATGTGCTGGCTTCCAACCTGATGC 1279
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 1280 AATGTGTAATATTGAAAAAAATGAAAATTATCAACCTAAATACGGCTACTGGGTTATAGGGTTAGAGGAAGGAG 1353
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 1354 TTAAATGTAGTGCTTTCCAGGATAGTTCCTTCCATACTCCTTCTGTTCCTTTCATTGTGCCCCTCTCTGTGATT 1427
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 1428 ATTTGTCCTGATCGTGTTGGAGTTTTCCTAGACTATGAGGCTTGCACTGTCTCATTCTTCAATATCACAAACCA 1501
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 1502 TGGATTTCTCATCTATAAGTTTTCTCACTGTTCTTTTTCTCAGCCTGTATTTCCATATTTAAATCCTAGAAAAT 1575
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 1576 GTGGAGTCCCCATGACTCTGTGCTCACCAAGCTCTTGAACCTTCTTACACACTCAGCCCCTTCTGTACAGCACC 1649
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 1650 TCTTGTCCAGGTGCATCTCATACACCTGAACTCATTTGCATCATTTTAACCATCTTTTCCTTGCTGTCTCCCTT 1723
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 1724 CTTTCTATTTGAACGTCCTTCACTCATCAGTAAAATGTAATAATTGCCTTGTGCCATATTGTCCCCAATATTTT 1797
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 1798 ATTGACATTTGATAGCAATTTTTTTCATCATTTTCCGTACTCCTAAGGAAAACTGACCTATACCTCATAAAATG 1871
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 1872 AGACCGCTATTTAGGTATTACTTCTGCCAGATATTTATCACCCAATTGCCTCTGACACTGACTAAGAAGATGAA 1945
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 1946 GAAAAGCTTTTCAACAGCCTTTCTATATCATCGTGTGATAATTGTTCACCAATGAATGAGTCCTTAGCCCTGTG 2019
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2020 TCAGTTTACCCTCGATGCCCTTATTTGTGAGTTAAAGAGAAAATATCATAAATGGTATACTCTTAAGTATAGAG 2093
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2094 GTTTTGTATCTAGAGGATCTCAGTTCAACTCCTGTCTCTCCATATACCAGCAGTGTAACTGTGAATAACATACT 2167
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2168 TAAATGGCTGTGCTTATTTCCTTTTCTTTTCTTTTTTCTTTTTTTTTTTTTTTGAGATGAAGTTTTGCTCTTGT 2241
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2242 TCCCCAGGCTGGAGTGCAATGGCACGATCTCGGTTCACTGCAACCTCCACCTCTCAGATTCAAGCAATTCTCCT 2315
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2316 GCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGCCCACCACCACCCCTGGCTAAATTTGTATTTTCAGTAGAG 2389
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2390 ACGGGGTTTCCCCATGTTGGTTAGGCTCGTCTAGAACCTCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCA 2463
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2464 AAGTGCTGGGATTACAGGCGTGAGCCACGGCGCCCAGCCTGTGCTTATTTTCTTAAAATAATTTTTGTATTAAA 2537
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2538 AACTTCACATTAAATAAGTGCTAATGTTTTATTGCATAGTAGGGTGACTAGAGTTAACAATAACCTATTGCATA 2611
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2612 TATTTTGAAATAGCTAGAAGAGAGGATTTTGAAAGTTCTCAACACAAAGAAATGACACATATTTGAGGTGATGG 2685
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2686 ATATGCTAATTACCCTGGTTCGGTTATTACGCAATGTATACATGTATCAAAACATCACACTGTACCACATAAAT 2759
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2760 ATGTATATTTATTATTTGTCAATTAAAAGCAAAATAAAACAAAAAACCTTCATCTAATACTTTGGATCATTGTG 2833
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2834 AAAAAATAAATTCCTGAAGTATAAAGCATCTATCTAAGTGTCTTGATCTAATAAGTACTTGTTCTACAAATTAT 2907
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2908 TGAAAAACATAAACTCTGTTAATGTCTCATGGAACAGGTTGTGCCTTCAGGGAAACTAGGATTGGATTTACTAA 2981
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2982 ATTCTCATTTTTTAGATCTCAGATACTACTGTCAAAATGACTTCAATTCTGCCTTCTATATATAATACACACAT 3055
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 3056 ATATTTAGGATTTTATTGTAATTCTAGTGTTGCTACATATTAGTCTTTATCAAACAAACTGAATTATGTGGGAA 3129
Query 1042 ----------------------------------------------------------------- 1041
Sbjct 3130 TCAGTTTATTAATTGTAAAAAATAATTATAATAAAATTAGCTGATGTAGTTTTTTAAAAGTTAAA 3194
