Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_09280
• Subject: XR_924211.1
• Aligned Length: 4471
• Identities: 2297
• Gaps: 2170

Alignment

Query    1  ---------------------------------------------------------------------ATGAG  5
                                                                                 |||||
Sbjct    1  AGCGACGTGCACGCAGTAGCCAGGCCTGACCCGCTGGTCCCTTGCTGGCGGGAGGAAAGAGGCGGCACCATGAG  74

Query    6  CCACGCAGTAACTATCGAGGAGCCCCAGGCCCAGCAGCAGGTGTCTCAAACTCGGTACCGGGAGAGGTCGCGGG  79
            ||||||||||||.||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||
Sbjct   75  CCACGCAGTAACCATCGAGGAGCCCCAGGCCCAGCCGCAGGTGTCTCAAACTCGGTACCGGGAGAGGTCGCGGG  148

Query   80  CTGGGAGCCACATCTCCTCCAATCGAGCGTATGATTTTCTGTACGATCCATTGTTTATTGTGTCAAGTGAGAAA  153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CTGGGAGCCACATCTCCTCCAATCGAGCGTATGATTTTCTGTACGATCCATTGTTTATTGTGTCAAGTGAGAAA  222

Query  154  GACCATACACAGGCAAATATCCAAGCTACCCTGATTCGCAGCAGACTGAGAAAAGTTCCCAGGTTTAGAACCAT  227
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct  223  GACCATACACAGGCAAATATCCAAGCTACCCTGATTCGCAGCAGACTGAGAAAAGTTCCCAGGTTTAAAACCAT  296

Query  228  GTTCAGTAACCTGATCCATTATCCAAGATATTCTCTATATTGGAGCAAGTCAGATCCTGTCCCACCATTTATCA  301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GTTCAGTAACCTGATCCATTATCCAAGATATTCTCTATATTGGAGCAAGTCAGATCCTGTCCCACCATTTATCA  370

Query  302  GTCGGGAATGGAAGGGACATAAGGAGAAACACAGAGAAGCCCTCCGGCAGCTCACCACAACTGACGCTTCTTTT  375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GTCGGGAATGGAAGGGACATAAGGAGAAACACAGAGAAGCCCTCCGGCAGCTCACCACAACTGACGCTTCTTTT  444

Query  376  CAGATGCCTAAAGAAGTTTATGAAGATCCTGAAGTTACTGGAAAGAATCGCTATAAATACTTTGAAAGGCCTTT  449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CAGATGCCTAAAGAAGTTTATGAAGATCCTGAAGTTACTGGAAAGAATCGCTATAAATACTTTGAAAGGCCTTT  518

Query  450  TCTCCCATTTTTTCAGCAGATGCCATTCAATGTTGTTTATGCCGTATCCAAGGCAGAACCATACACTTTTCCTC  523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TCTCCCATTTTTTCAGCAGATGCCATTCAATGTTGTTTATGCCGTATCCAAGGCAGAACCATACACTTTTCCTC  592

Query  524  CTACTTCTACTAAGCACCTATCCATCCCTTCAAAGTCTACTGTGGGCACTCAGACTGATTATCGGGATGCTGAC  597
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CTACTTCTACTAAGCACCTATCCATCCCTTCAAAGTCTACTGTGGGCACTCAGACTGATTATCGGGATGCTGAC  666

Query  598  GTTCAAACAGATCCATACTCTCCAGAATATGTAGTATGTCAGGACTCAATCCCTGAGCTCTTGACCCTGGCTAC  671
            |||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GTTCAAACAGATCCATACTCTGCAGAATATGTAGTATGTCAGGACTCAATCCCTGAGCTCTTGACCCTGGCTAC  740

Query  672  GCTTACTTGGGGTCGGGGTCTCCCAGCAGGACAAGCTGAGGTGGAGATGATAGAAAGAGCCCGCGAGAAGCGTG  745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GCTTACTTGGGGTCGGGGTCTCCCAGCAGGACAAGCTGAGGTGGAGATGATAGAAAGAGCCCGCGAGAAGCGTG  814

Query  746  CTTGGGAAGCCTCTCTCCCCGCTCTGAGTGACACCTCCCAGTTTGAGAAGAGGAGGAAAATGATGAATGAAATG  819
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CTTGGGAAGCCTCTCTCCCCGCTCTGAGTGACACCTCCCAGTTTGAGAAGAGGAGGAAAATGATGAATGAAATG  888

Query  820  GAGAGGAAGGAGTGGGCCTTCAGAGAGCAGGAGATTGAAAAACTGCAGGAGATTCGCCTGGAAGTTCTAAAAGA  893
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GAGAGGAAGGAGTGGGCCTTCAGAGAGCAGGAGATTGAAAAACTGCAGGAGATTCGCCTGGAAGTTCTAAAAGA  962

Query  894  GCTGTTGAGGAAGCGTGAAGAGAATCAGAATGAAGTGAATATGAAGCACTTGAATGCCCGGTGGTCTAAACTGC  967
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GCTGTTGAGGAAGCGTGAAGAGAATCAGAATGAAGTGAATATGAAGCACTTGAATGCCCGGTGGTCTAAACTGC  1036

Query  968  AGGAGGGAAAAGAGGCAAAAATGGCAAAAATTCAGCGCACGCATGTATCAACAATCAGAAAACTTGTAGGAAAG  1041
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  AGGAGGGAAAAGAGGCAAAAATGGCAAAAATTCAGCGCACGCATGTATCAACAATCAGAAAACTTGTAGGAAAG  1110

Query 1042  AGAAAGAATATAGAAGGGAAGTTGGAGAGAAGAAATATCATCAAGGATTATTCTGATTATGCATCACAGGTCTA  1115
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  AGAAAGAATATAGAAGGGAAGTTGGAGAGAAGAAATATCATCAAGGATTATTCTGATTATGCATCACAGGTCTA  1184

Query 1116  TGGACCTCTGTCTCGTCTTGGGTGTTTCCCAGACAACAACTCAGAGGACTTTGTAGTAAAAAACTACTATCTCA  1189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TGGACCTCTGTCTCGTCTTGGGTGTTTCCCAGACAACAACTCAGAGGACTTTGTAGTAAAAAACTACTATCTCA  1258

Query 1190  ACACCTATGAAGGATTAGTGGAACTTGAGTCATGTCTCCCAGATTTTGTGACACAACCCCAAATCAGAGCTCCA  1263
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  ACACCTATGAAGGATTAGTGGAACTTGAGTCATGTCTCCCAGATTTTGTGACACAACCCCAAATCAGAGCTCCA  1332

Query 1264  AAACCTAAAGTCATTACCACCAAAGCTGGTTTTCTGAAGAGGGCAGCAAGGTTGGACTATGAGTTGGCAGAGGT  1337
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AAACCTAAAGTCATTACCACCAAAGCTGGTTTTCTGAAGAGGGCAGCAAGGTTGGACTATGAGTTGGCAGAGGT  1406

Query 1338  TCATAAGGCACTGTTGGATAAGAAGAATAAAGTTCTTGAAGTAAAGAAACCCCCTCGCTTCCTTCAAAGAAACC  1411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TCATAAGGCACTGTTGGATAAGAAGAATAAAGTTCTTGAAGTAAAGAAACCCCCTCGCTTCCTTCAAAGAAACC  1480

Query 1412  CAATACCTCAACCTCGGCTTCCAACTCCAACCTTGGAAATGACGTCCAATGAAGAAGAAGAAATGGAAATGGCT  1485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  CAATACCTCAACCTCGGCTTCCAACTCCAACCTTGGAAATGACGTCCAATGAAGAAGAAGAAATGGAAATGGCT  1554

Query 1486  GTGATCTACCTTCAAAAGTTACTCCGGGGCAGAGTCGTTCAGAACATGATGTTTGAAGGGAAAGAAAAGCGACT  1559
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GTGATCTACCTTCAAAAGTTACTCCGGGGCAGAGTCGTTCAGAACATGATGTTTGAAGGGAAAGAAAAGCGACT  1628

Query 1560  GGAGTTGATCCAGGAGTTGCGCACCTGCCACGCACTACAAGAAGATGAAAAGCTGGTGAAAAAAGCCGAGAAGC  1633
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GGAGTTGATCCAGGAGTTGCGCACCTGCCACGCACTACAAGAAGATGAAAAGCTGGTGAAAAAAGCCGAGAAGC  1702

Query 1634  AAGTGACCCTGGCCTTACAGCGGCAGAGGAACTTGCATGAGCACAAGGTGTCACTGGTTGAAAACCATTTGGCC  1707
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  AAGTGACCCTGGCCTTACAGCGGCAGAGGAACTTGCATGAGCACAAGGTGTCACTGGTTGAAAACCATTTGGCC  1776

Query 1708  GGACTGGAAGGAAGGGCACTAGCAGACATGTTTGACTTCCTGTCCAAAGAGCTGGTGAGACTGCAGGAGGAGAG  1781
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GGACTGGAAGGAAGGGCACTAGCAGACATGTTTGACTTCCTGTCCAAAGAGCTGGTGAGACTGCAGGAGGAGAG  1850

Query 1782  GAGGATCCATGCCTTTGTCATGCTGGCTGAGCGCCAGCGGCGGGTACGAGAGGCTGAAGAGAGTGGTCGGCGCC  1855
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  GAGGATCCATGCCTTTGTCATGCTGGCTGAGCGCCAGCGGCGGGTACGAGAGGCTGAAGAGAGTGGTCGGCGCC  1924

Query 1856  AGGTGGAAAAACAGCGCCTGCGGGAGGAGGACGAGATATTTAAGGAGGTGGTTAAAGTTCACCATAGTACTATA  1929
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  AGGTGGAAAAACAGCGCCTGCGGGAGGAGGACGAGATATTTAAGGAGGTGGTTAAAGTTCACCATAGTACTATA  1998

Query 1930  AGCTCCTACCTAGAAGACATAATACTGAATACCGAAGCGAATACTGCAGAAGAACAAGCCAGGGCAGAAATAGA  2003
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  AGCTCCTACCTAGAAGACATAATACTGAATACCGAAGCGAATACTGCAGAAGAACAAGCCAGGGCAGAAATAGA  2072

Query 2004  GAAGATGGCTGAGAAAATCAATGACATTGCTTATGAAATGGAAAGCC---------------------------  2050
            |||||||||||||||||||||||||||||||||||||||||||||||                           
Sbjct 2073  GAAGATGGCTGAGAAAATCAATGACATTGCTTATGAAATGGAAAGCCGGTGTGTATCAAGAGAACAGATTGTAG  2146

Query 2051  -------------------GCCGAACCTATCTTCAGTCAGAGGAGATTGTTGCTGAGTTGGTTTATAGTTTTCT  2105
                               |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  AATGGACAGCCCATTTGCTGCCGAACCTATCTTCAGTCAGAGGAGATTGTTGCTGAGTTGGTTTATAGTTTTCT  2220

Query 2106  GATCCCAGAGGTGCAAAAATACTTTGTCAAAGAAAAAGTGAGGAACGCACAGCGGAAACATATTCTTGCAGCCC  2179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  GATCCCAGAGGTGCAAAAATACTTTGTCAAAGAAAAAGTGAGGAACGCACAGCGGAAACATATTCTTGCAGCCC  2294

Query 2180  ATCAGATCATCCACAGTTACACGGAAAGCATGGTTCAAAAGAAATTAACTGAGGGAGAGCAAGATGAGGCCTCA  2253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  ATCAGATCATCCACAGTTACACGGAAAGCATGGTTCAAAAGAAATTAACTGAGGGAGAGCAAGATGAGGCCTCA  2368

Query 2254  AATGCTGCCATGTTACTTGAGAAAGAAACTCAAAATGAGAACAACAGC--------------------------  2301
            ||||||||||||||||||||||||||||||||||||||||||||||||                          
Sbjct 2369  AATGCTGCCATGTTACTTGAGAAAGAAACTCAAAATGAGAACAACAGCTAAGATTGTGATTTTTTTGTAAAAGA  2442

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 2443  AGCTGTACGAATCATCATAAATAATTCCAATAGTCTGCACTTCTCCCAAGGTGTGCACTGCTCATAAACTTGCC  2516

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 2517  AGTGTGTGATTCATGAGAAAGGAGATTTATTTTCCTTAAACATCCAATAATTTAAAATGATTTTCAATAATAAT  2590

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 2591  AATCAAATGAAAAAGCTTCATTCTCTTCAGTGTCTTCTAGATGCCCTACTTAAAGAGAACATTTTCTTATGTCT  2664

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 2665  CATTTCAATATTTTGTTAACTATGAGGATGTGCTGGTTTGTTGAATCAAACAAAAGGAAATGTTGTGGAATATT  2738

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 2739  TTTCCAAGTAGTTTTGGTTCACTATTCACAGGACATTGGCATTATCTACTAAGGCTGAAAATGTGCATATTCCA  2812

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 2813  TGACTCAGGATTTTATCTCCTAGATATATATTCAACAGAAATGCATGAGTATGTGCACCAACAGGCATGACAAA  2886

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 2887  AATATTTATAGTAGTGGTGTTCACAATAGTCCCAAACTGGAAACCCAAGTGTCCATCTCCATCGGAACAGAAAA  2960

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 2961  CTATACTTTGGTCTGCTTCTACAGTGGCACATCAACCCACCTTTGAGCTTTAGATCTAAGAAGTGTGTTCATGC  3034

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 3035  AACAGCCATAGAGATGGTGCTATTGAAAGGCAATCTGCCCATCCTGTGTATTGACAAGCATCAGGATTCCAGGA  3108

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 3109  GGATTCTTCCTGATTCAAAGACTGTCAAATAGGAAAAAAGAAAACAGTAAATGAACAAAAACATCAACATGGAG  3182

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 3183  TCCAAGTAATGAATTTATAGAGGAAAATGTATGCTACTCTGAAAACAAAGCTTATGTTAGAGAATATCTTACTG  3256

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 3257  TAAGAAACAAGGAAAATTGCAGAAACATTTGCTGAGTGTTTTTAATAGGAGTCAAAAAGAAAGGGTCTTTTCAG  3330

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 3331  AAACTGAAGTAGGAAATAATAACAGACAAGGTCAAAAAATAGATGCAGGCTGAAAAGAAAAGGAAGTGGGCTAA  3404

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 3405  GATGGGAAAAATATAAAAAGATTTAAAATCCAGCAACAAAATTTACACATTCATTTGGATGCAGTGAAAAGGGC  3478

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 3479  AGAAATACCACAGCAGAGAATAAAATTGATAATGTTGGCAACACATTTATTAAGTGATCCAACATGGGATGGGA  3552

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 3553  AGGAATGGGCAAAGAGATTAAAATGACAGAAGTTAGCTGTAGATGACCTATCCCACAGCAATCGGAGTTCTTGA  3626

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 3627  AGAAGAAACCAGAACAAATAAAATAGAAACAATAATCAGAGTTTAATAATTAATTTTCTGAGTTTTTTTTTAAA  3700

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 3701  AAAACTAATTATACAAACTTGAAAGGGTTCACCTTGCCCTAGCAAAACTAGGATTGGGACACCTTTTTTTCCCC  3774

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 3775  CTGAGGATCACTGACAAAAAACACTGCACCAGTAAGGAAGCAACTAAATTTTGTTTTGTTCTTTGAAAAAGGCT  3848

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 3849  AACCTGAGCTAGGTAAAGGTTATATCATTCACTTTTGAAATAAACCATCGAGAACACAAAATGACAAGTGAGTT  3922

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 3923  AGGTTGGGCTGATGGGATAGAAGGTGGGAGGGGAATGCTATACAGCTGGGAACAGCAGACTTTCTCTGAAGGGC  3996

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 3997  CAGATGGTAACTACATTAGGGTTTGCGGGTCTGATGGTCGCCATCATAACTGCATACTCAACTCTGCCGTTGTA  4070

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 4071  GGGTAAGAGCAGCACTCGATGACACAGAAATGAATGCACATGACTGTGTTCCAGTAAAATTTTATTTTAATTAA  4144

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 4145  AATCAATTCATGTTTGAAAAAGGATTTAAAGTAGCTTCTAATAAAGGACATGTGTAATGAAACTTAAAATATGA  4218

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 4219  TATTTTCTTTAAAAATCTTTATCCTTATGTAGACTTCTAAAACTATGTTTTGCATTTAGACAGTCAAGGAAAAT  4292

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 4293  ACAAGTTGTTATACAATTCTCATTGACTAATTGAAGTTTACTAGGAGAGGAAAACTTTTTCTTGATACCGGCAA  4366

Query 2302  --------------------------------------------------------------------------  2301
                                                                                      
Sbjct 4367  TCTTTTACTTATAATGGCTTGAGTTAAAATGCTCCAACTTTTCTAATTTTTGCTTTTGAAAATAAAACACCTAT  4440

Query 2302  -------------------------------  2301
                                           
Sbjct 4441  AGTGACAATAAAAACACACATTTAAAGCCAA  4471