Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_09323
- Subject:
- NM_001017967.4
- Aligned Length:
- 1362
- Identities:
- 963
- Gaps:
- 291
Alignment
Query 1 ATGGAAGATCCGTCGGGGGCTCGCGAGCCCCGGGCCCGGCCGAGAGAGCGGGACCCGGGACGGCGCCCCCACCC 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGATCCGTCGGGGGCTCGCGAGCCCCGGGCCCGGCCGAGAGAGCGGGACCCGGGACGGCGCCCCCACCC 74
Query 75 AGACCAAGGCCGCACCCACGATCGACCGCGGGACCGACCCGGGGACCCGCGCAGGAAGCGAAGCAGCGACGGGA 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AGACCAAGGCCGCACCCACGATCGACCGCGGGACCGACCCGGGGACCCGCGCAGGAAGCGAAGCAGCGACGGGA 148
Query 149 ACCGGCGAAGGGACGGGGACCGGGACCCGAAGAGAGACCAGGAGAGGGACGGGAACCGCGACCGGAACCGGGAC 222
|||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 ACCGGCGAAGGGACGGGGACCGGGACCCGGAGAGAGACCAGGAGAGGGACGGGAACCGCGACCGGAACCGGGAC 222
Query 223 CGGGAGAGGGAGAGAGAGAGGGAAAGAGACCCGGACCGAGGCCCCCGCCGGGACACACACAGGGACGCGGGCCC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CGGGAGAGGGAGAGAGAGAGGGAAAGAGACCCGGACCGAGGCCCCCGCCGGGACACACACAGGGACGCGGGCCC 296
Query 297 TCGCGCAGGTGAACACGGAGTTTGGGAAAAACCGCGCCAAAGCCGGACGCGGGACGGAGCCCGGGGACTGACCT 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCGCGCAGGTGAACACGGAGTTTGGGAAAAACCGCGCCAAAGCCGGACGCGGGACGGAGCCCGGGGACTGACCT 370
Query 371 GGGACGCAGCCGCGCCTCCTGGGCCCGCGCCCTGGGAAGCCCCGGAGCCGCCGCAGCCGCAGAGGAAGGGAGAC 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGGACGCAGCCGCGCCTCCTGGGCCCGCGCCCTGGGAAGCCCCGGAGCCGCCGCAGCCGCAGAGGAAGGGAGAC 444
Query 445 CCCGGGCGCCGCAGACCCGAAAGTGAACCCCCTTCGGAGAGATATCTGCCCTCGACCCCCAGGCCTGGACGAGA 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCCGGGCGCCGCAGACCCGAAAGTGAACCCCCTTCGGAGAGATATCTGCCCTCGACCCCCAGGCCTGGACGAGA 518
Query 519 GGAGGTGGAATATTACCAGTCAGAGGCGGAAGGACTCCTGGAATGCCACAAATGCAAATACTTGTGCACTGGGA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GGAGGTGGAATATTACCAGTCAGAGGCGGAAGGACTCCTGGAATGCCACAAATGCAAATACTTGTGCACTGGGA 592
Query 593 GA-GCCTGCTGCCAAATGCTGGAGGTTCTCCTGAA----------CT----TGCTGATCCTGGCCTGCAGCTCT 651
|| |..||.|| ||.||..|||||||..||.|||| || ||| |||.||||||.|..||.|
Sbjct 593 GAGGTGTGGTG-CAGATAGTGGAGGTGGTCTTGAATGGGATGGTTCTCATATGC--ATCGTGGCCTCCTACTTT 663
Query 652 GTGTCT-------TACAGTTCCA-------CAGGGGGCTACACGG-GCATCACCAGCTTGGGGGGCATTTACTA 710
|| .|| |.||||.||| |||.|| ||| | ||||.|||..||..|||||
Sbjct 664 GT-CCTTGCCGGATTCAGTGCCAGCTTTTCCAGCGG------CGGTG--------GCTTTGGGAACAACTACTA 722
Query 711 CTATCAGTTCGGAGGGGCTTACAGTG-GCTTTGATGGTGCTGACGGGGAGAAGGCCCAGCAACTGGATGTCCAG 783
||..|.|||| ||||| ||.|| ||| .|||.|||..|.|||.||||| ||||
Sbjct 723 CTCACCGTTC-GAGGG-----CACTGAGCT----------------AGAGCAGGTTCGGCAGCTGGA---CCAG 771
Query 784 TTCTACCAGCTAAA---------GCT-GCCCATGGT-CACTGTGGCAATGGCCTGTAGTGGAGCCCTCACAGCC 846
||| ||.| ||| ||||.||.| .||.||||| .||| ||||
Sbjct 772 ------CAG-TACACGATCCTCCGCTCGCCCCTGATATACGGTGGC-GTGG-CTGT------------------ 818
Query 847 CTCTGCTGCCTCT-----TCGTTGCCATGGGTGTCCTGCGGGTCC--CGTGGCA----TTGTCCACTGTTG-CT 908
.||| |||..||| ||.|..||||||||||..|.| ||| .|.|.|| |.|..||.||||| |.
Sbjct 819 TTCT-CTGGGTCTGGGGGTCCTCACCATGGGTGTTTTAC---TCCAAGGAGCCAAGAGTCGAACAATGTTGTCA 888
Query 909 G----GTGAC------CGAAGG----CTTGTTGGACATGCTCATCGCG---GGGGGGTACATC-CCGGCCTTGT 964
| |||.| ||.||| ||| ||..|||.|.||| |.|||.|||..| |.|||.|||.
Sbjct 889 GGGAAGTGGCTCCTCACGGAGGCCGCCTT------CAGCCTCCTAGCGGCAGTGGGCTACTGCACAGGCATTGG 956
Query 965 ACTTCTACTTCCACTACCT--CTCTGCTG-CCTATGGCTCTC----CTGTGTGTA----AAGAGAGGCAGGCGC 1027
..|| |||.||| ||.| ||||||.| .|.||.||.| | || ||.| ||||||| ||||.|
Sbjct 957 TGTT-TACCTCC---ACGTGGCTCTGCAGATCAATAGCAC-CGACACT---TGCAAAACAAGAGAG--AGGCTC 1020
Query 1028 TGTACCAAAGCAAAGG-CT-----------ACAGCGGTTTCGGCT-GCAGTTTCC-ACGGAGCAGATATAGGAG 1087
|.|.|| .||||.|| || ||.|| |.||| ||||...|| ||||||| ||
Sbjct 1021 TATGCC--CGCAAGGGTCTCACCTGGATGGACTGC-----CAGCTGGCAGGCACCGACGGAGC---------AG 1078
Query 1088 CTGGAATCTTTGCTGCCCTGGGCATTGTGGTCTTTGCCCTG---------GGGGC------GGTCCTGGCCATA 1146
|.|..|.|||||| ||||..||| |.|| ||.|| |||.||||||.|
Sbjct 1079 CAGCCACCTTTGC-----------TTGTCTTCT----CGTGATCATGTACGGCGCCAGCGTGGTGCTGGCCCT- 1136
Query 1147 AAGG----GCTACCGAAAAGTTAGGAA--GCTAAAAGAGAAGCCAGC--AGAA--------ATGTT-------- 1196
| ||||||||.|| ..||| ||||.| |||.|||| |||| |.|||
Sbjct 1137 ---GCGTAGCTACCGAGAA---CAGAAGCGCTACA----AAGGCAGCCGAGAACAGCCCGGAAGTTACAGTGAT 1200
Query 1197 -----TGAATTT------------------ 1203
.||||.|
Sbjct 1201 GCACCGGAATATCTGTGGTCTGGAACTCTT 1230