Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09451
Subject:
NR_110210.1
Aligned Length:
4275
Identities:
1371
Gaps:
2901

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTAGTGATGTCATATCCGTTGTCCAGGTCTCCACACCTCTCTCAGCAGTTAATCCCTTTATCTATTCCTTGGGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAAAACTTTTGAGGTGGGCTAGCTATATAGCAGCGGGGGAGAGGGTAAACTGGGGCGCGCGGGTTGGAGGCGCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCAGCACCGCGGCCAGCGCCCACTGCAGCCCAACCCACTCTCTAGAGCTCCCGGACTCCTAGCTCTGAGAATGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CTGCGGAATGATCGCCCCCCAGGGCGGCTGCCGCCGCTGCCGCTGCTGCTGTTATTGCTACTGCTGCTGCCGCC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GCCTCTGCTTCCACTCGGCTCTGACTGGCAGGCAGAAAGTGCAACTGACGAGGGAAAGGTCTCTGCAGTGAGTG  370

Query    1  ------------------------------------------------ATGCAGGCGACGTCCAACCTTCTCAA  26
                                                            ||||||||||||||||||||||||||
Sbjct  371  GAGAGCCTACATAAAAGAGAGTAAAGAGGGGCAAAAACCCAGATCAGAATGCAGGCGACGTCCAACCTTCTCAA  444

Query   27  CCTCCTGCTGCTGTCTTTGTTTGCCGGATTAGATCCTTCCAAG-------------------------------  69
            |||||||||||||||||||||||||||||||||||||||||||                               
Sbjct  445  CCTCCTGCTGCTGTCTTTGTTTGCCGGATTAGATCCTTCCAAGGATGGAAGTAAAAAGGCAGGACCTCGAGCAG  518

Query   70  ------------------------------ACTCAGATTAGTCCTAAAGAAGGGTGGCAGGTGTACAGCTCAGC  113
                                          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TCACCTTGGATCCCAAAATGAAAGTGTTATACTCAGATTAGTCCTAAAGAAGGGTGGCAGGTGTACAGCTCAGC  592

Query  114  TCAGGATCCTGATGGGCGGTGCATTTGTACAGTTGTTGCTCCAGAACAAAACCTGTGTTCCCGGGATGCCAAAA  187
            |||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TCAGGATCCTGATGGGCGGTGCATTTGCACAGTTGTTGCTCCAGAACAAAACCTGTGTTCCCGGGATGCCAAAA  666

Query  188  GCAGGCAACTTCGCAAACTACTGGAAAAGGTTCAGAACATGTCCCAGTCTATTGAAGTCTTAAACTTGAGAACT  261
            ||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GCAGGCAACTTCGCCAACTACTGGAAAAGGTTCAGAACATGTCCCAGTCTATTGAAGTCTTAAACTTGAGAACT  740

Query  262  CAGAGAGATTTCCAATATGTTTTAAAAATGGAAACCCAAATGAAAGGGCTGAAGGCAAAATTTCGGCAGATTGA  335
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CAGAGAGATTTCCAATATGTTTTAAAAATGGAAACCCAAATGAAAGGGCTGAAGGCAAAATTTCGGCAGATTGA  814

Query  336  AGATGATCGAAAGACACTTATGACCAAGCATTTTCAGGAGTTGAAAGAGAAAATGGACGAGCTCCTGCCTTTGA  409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AGATGATCGAAAGACACTTATGACCAAGCATTTTCAGGAGTTGAAAGAGAAAATGGACGAGCTCCTGCCTTTGA  888

Query  410  TCCCCGTGCTGGAACAGTACAAAACAGATGCTAAGTTAATCACCCAGTTCAAGGAGGAAATAAGGAATCTGTCT  483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TCCCCGTGCTGGAACAGTACAAAACAGATGCTAAGTTAATCACCCAGTTCAAGGAGGAAATAAGGAATCTGTCT  962

Query  484  GCTGTCCTCACTGGTATTCAGGAGGAAATTGGTGCCTATGACTACGAGGAACTACACCAAAGAGTGCTGAGCTT  557
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GCTGTCCTCACTGGTATTCAGGAGGAAATTGGTGCCTATGACTACGAGGAACTACACCAAAGAGTGCTGAGCTT  1036

Query  558  GGAAACAAGACTTCGTGACTGCATGAAAAAGCTAA---------------------------------------  592
            |||||||||||||||||||||||||||||||||||                                       
Sbjct 1037  GGAAACAAGACTTCGTGACTGCATGAAAAAGCTAATTGATTTAAAAAAGAGAAAAGAAGAAGAAAAAAGGCAAC  1110

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1111  AGAAAGGAGAAGCATAAGCAATAGTATTTTGGGAAGCTATAACACGCGACTTGCCTCCCTGTTCACCTTTGTAT  1184

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1185  TCTCAGCACCTAGAATAGTTCTGGTACAAAATAAGTTCACAGTAAATGGTTGTCAAATGAATAAATTAATTATT  1258

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1259  ATATCTTTAAATAGTAACTATTGTTTTTACCCTCTAACATATTTCAGAGAAATGCTTAGTGCTACAAGAAAGTA  1332

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1333  AAGTTTGCTTTCTAAGGTATGATTGACTGGAGTAAGAATCAATTTTCCTCACAAAACCAGGTACAAAATAAAAG  1406

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1407  AGTCAACTAGCCAAAAGACCACTTTACCATGGTCACCCAATGTTTAGTTTAAGAGCCAGAAGCTTTTAACCTCC  1480

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1481  GGTACAAATTCTGTCCTAAGTTTTGGCCGAAACAACCTAAGACTCAGCAGTATCCCTTTGCCATAGAGATGCAA  1554

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1555  GGCTGGATTAGATTCAAGCACCATCGAAGCCAAAGACACCCCAAGCCAGTGATGTGCTGTGGGTTGTTTGGAAA  1628

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1629  TGTCGATTAGATAAGGCTCATGGTATGATTCAGAGCTCCAAGGACAGTTCTTGTTCAGGTTTCAACTAATCAAC  1702

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1703  ATCGGATTATGCACACCTCAACATCTGAAATATGCAGACATTTGAGACAAATACCAGAATTGTGTCTTCTTGCT  1776

Query  593  --------------------------------CATGTGGCAAACTGATGAAAATCACAGGCCCAGTTACAGTCA  634
                                            ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  TTGTACAAATCATGCTTCAGTCTGGCAATAAGCATGTGGCAAACTGATGAAAATCACAGGCCCAGTTACAGTCA  1850

Query  635  AGACATCTGGAACCCGATTTGGTGCTTGGATGACAGACCCTTTAGCATCTGAGAAAAACAACAGAGTCTGGTAC  708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  AGACATCTGGAACCCGATTTGGTGCTTGGATGACAGACCCTTTAGCATCTGAGAAAAACAACAGAGTCTGGTAC  1924

Query  709  ATGGACAGTTATACTAACAATAAAATTGTTCGTGAATACAAATCAATTGCAGACTTTGTCAGTGGGGCTGAATC  782
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  ATGGACAGTTATACTAACAATAAAATTGTTCGTGAATACAAATCAATTGCAGACTTTGTCAGTGGGGCTGAATC  1998

Query  783  AAGGACATACAACCTTCCTTTCAAGTGGGCAGGAACTAACCATGTTGTCTACAATGGCTCACTCTATTTTAACA  856
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  AAGGACATACAACCTTCCTTTCAAGTGGGCAGGAACTAACCATGTTGTCTACAATGGCTCACTCTATTTTAACA  2072

Query  857  AGTATCAGAGTAATATCATCATCAAATACAGCTTTGATATGGGGAGAGTGCTTGCCCAACGAAGCCTGGAGTAT  930
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  AGTATCAGAGTAATATCATCATCAAATACAGCTTTGATATGGGGAGAGTGCTTGCCCAACGAAGCCTGGAGTAT  2146

Query  931  GCTGGTTTTCATAATGTTTACCCCTACACATGGGGTGGATTCTCTGACATCGACCTAATGGCTGATGAAATCGG  1004
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  GCTGGTTTTCATAATGTTTACCCCTACACATGGGGTGGATTCTCTGACATCGACCTAATGGCTGATGAAATCGG  2220

Query 1005  GCTGTGGGCTGTGTATGCAACTAACCAGAATGCAGGCAATATTGTCATCAGCCAACTTAACCAAGATACCTTGG  1078
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  GCTGTGGGCTGTGTATGCAACTAACCAGAATGCAGGCAATATTGTCATCAGCCAACTTAACCAAGATACCTTGG  2294

Query 1079  AGGTGATGAAGAGCTGGAGCACTGGCTACCCCAAGAGAAGTGCAGGGGAATCTTTCATGATCTGTGGGACACTG  1152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  AGGTGATGAAGAGCTGGAGCACTGGCTACCCCAAGAGAAGTGCAGGGGAATCTTTCATGATCTGTGGGACACTG  2368

Query 1153  TATGTCACCAACTCCCACTTAACTGGAGCCAAGGTGTATTATTCCTATTCCACCAAAACCTCCACATATGAGTA  1226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  TATGTCACCAACTCCCACTTAACTGGAGCCAAGGTGTATTATTCCTATTCCACCAAAACCTCCACATATGAGTA  2442

Query 1227  CACAGACATTCCCTTCCATAACCAATACTTTCACATATCCATGCTTGACTACAATGCAAGAGATCGAGCTCTCT  1300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  CACAGACATTCCCTTCCATAACCAATACTTTCACATATCCATGCTTGACTACAATGCAAGAGATCGAGCTCTCT  2516

Query 1301  GTGCCTGGAACAATGGCCACCAGGTGCTGTTCAATGTCACCCTTTTCCATATCATCAAGACAGAGGATGACACA  1374
            .|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  ATGCCTGGAACAATGGCCACCAGGTGCTGTTCAATGTCACCCTTTTCCATATCATCAAGACAGAGGATGACACA  2590

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2591  TAGGCAAATGTGACATGTTTTCATTGATTTAAACAGTGTGATTTGTGATAAACTCTATAAGACCCCTTCCGTTT  2664

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2665  TTTTCTTCACTATTATTTTTCATCATTTCTCCAAAGCAAAGCATTTTTATTGTAAAGTTGGTGTTTCAAAAACA  2738

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2739  TAGCTGAGCTTGTCTAACTTACCATGTTGGAAACACATCTTAACTTCTAAATTTACAAGGCCTATCATGTCCTT  2812

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2813  GTCATGAAAAGCACTAAAAAAAAAAAGAGTTTAAGTGGCTAAAGTCATAGTTTTGCAAGAGATTAATGATCTGC  2886

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2887  CTTATATTAGAGTCAGAGACTAATGGTGGCTTAAATGCACGAATGTCTTTTTTTTTAAAACTGTCATTTTTTAC  2960

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2961  TGTCTTTTGCTCCATATCAGGAAATATTTTGGTAGGAATTAGGAGAACAAAAAGCACTTTTATCCCATTTATTT  3034

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3035  CTTTAAAAAATGTAAGGATTTCATTTATATTGAAAAATAATATTAATCATTTTGCTGTTAACACAATTCTCTGA  3108

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3109  TGCGGTGCTGTACAGTCATTTTTAAATCTCTTGCTAACATTTTATTGGCAGTATGTATTTCTACCATTGTAACC  3182

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3183  ACCATTGTGCTATTGTATCTCTTCACTTCTGTGAAAGTAATATTTTTTATAAAATACACTGAAATTTAACCTCA  3256

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3257  GTAATTGAGTCCATTTTCAAGTGTGGTCAAGAATAATCTTCTTGGCTTACCCCTTTACATAAGCATTATAAACT  3330

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3331  AAAATGAAAACCAAACCAGACACCTGACATAGAGTCTTTATTTTACCCCAAGTTTTTTGGGCCACTGACATTGA  3404

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3405  ATGCAACAACTGATTTCATACAACTGAGTTACTCTGTTCACTCCACTGAATGCAACCCATATAGTTTCTTGCAC  3478

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3479  AAGGTGCATCTGGATTCCAAATATTGGATTTGAGTTGACTCTACTCATTTATTATACACTAAAGAAATTTTGTT  3552

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3553  CTTCATAGTTAAATGTACTAGCATTTAATTTATATTTTACATACAACTTGCAATAATGAAATTCCTTATGTCAG  3626

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3627  GACCCTGAAAATAAGCACATTTGAAAACTCTTAGAAAAAAAAAATTCTGTAATGTCCTCTAGATTTAGATTATG  3700

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3701  AGCCCTGAGGAGTTATTGGCAAGATTTGTGCAAAATAAAATATGGGGAGACTTGGGAGTTGTCTTTGTGGTTTC  3774

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3775  AAAAGTGTAAATAACCAATTCAGAAAACAAAATGGAAAAACGACCCCTTGTTACCTTGATTCACTGTATGTGGA  3848

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3849  AAAATAATGTAACCAAAAGGGAAGAGCTTTAATAATACTTATGTTAATAACTCTATGAAACATATAAGCTAACT  3922

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3923  ATATATCAAACATTTCATTGAGTTTGGATGTATTTTCCACATATTAAAAAAATAGTTCCCTAAGGCAGCTTTAT  3996

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3997  GGAAACTAATATAGGTTGGTTTTACAATTTAAAAAGTATATTCTATAATAAATAATAAAACAAATTGTTTTAAA  4070

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 4071  TGTTTAGTTTCACACATACATAGTACCATGATTTTCTTTGAAAGATAAGGATGTAATGATTTAGATAAAGCATC  4144

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 4145  ATGTAAAGAAATCCTAACATTTAAGTGTAATTCATTTCAAATGTCACAAGTAAAGCATCATCCTCAAATATCTC  4218

Query 1375  ---------------------------------------------------------  1374
                                                                     
Sbjct 4219  ACTGTCAAAATTGTAGAATTAAATAACCCAATCTTGAAACTGTCAAAAAAAAAAAAA  4275

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