Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_09759
- Subject:
- XR_937830.3
- Aligned Length:
- 5220
- Identities:
- 830
- Gaps:
- 4385
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTAAAAGTGCTGGGAGCAGGTGAGCCACAGGCAACTCTTCTCTCGGAACCTGCACACAAACTGGGGCTATAGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATTCTCCAAGGACAGATGGCAGTGGAGCTAGACCTGAGTAGGGGGCAGGGAGTTCAGGACAACCCTCCTGTAAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTGGGGGTGGTCTGGGGGTAAGGCTGGGGCTTCCTGGGAAAAGGAAGGCCATGAGAAGGCAGAGAAGTAGGCCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGCTGGGTTCTTGCAGAAAGCATCAGTGCCTACAAATGGAGCTCCACCCTTCAGTCTGTGTCGTGTTCAGTGT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CACAAAGCTACCACCTGTCACCAGAGCCTACTGCTGCTCTCCACTCAACTGGCCTCTGCTGCCAGGCCACTGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGTCTCTGCTTCCGACTTTGTCTTCTTTCTCCCTTTCCCTCCTTCCCTCATACATTGCTTTCTCTCCCTCTCCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCGTGTCTCTGACATCTCTCACTTCCTTTTAGATGAATCTACTTTAGGTTCATTCCTATATTTAGCATTTATGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCAGTCTACTTCCAGAAATGACTTTAGACTGCCTTTCACATAAAATCACAAAACTACAGGACAGTACAAACAGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTGCCAGAGAAATCTGGGTCAAAGAAAGGAATAGGAAAGAAAGTTTCTGTAGTCAAGCACCTGAACAGGCCCTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGCTCACAGGCAGCCAATGTAAAGAGGGAAACACAGTGAGTTATGCAGTTCCCAGTGTCCAGTTAAAGGAAGCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CACATGCTAGTCATGTGAGACAACCTTTTATTGGGACATCAGGTTCTAGAACTAATTCTAAAGAAGTATCAGAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ACAATATACATAATTTGTCTTTCTTAGTAATTTGGCTTCAAAGACAAATTTTTGACCACACCTCCGTTTTCTCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTCAGACTTCTCTCCCTTCTAAGCAGGCTTCTCTGTTGCTCCATTTGCTTCATACATACTTGACCTCTCTTTTC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TATTCCCCATCACTTTTGTGCTGAAGCTAATCATATTTATGTCTGTCTTTCTCTACTTTTCCCTAATTCCCTCT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CCTCCTGACTCCTGTAGACATTCCCAATGATACCCACCGTCATACATTTAGGCTTTTCTTGCCTTTCCCTGAAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCCTGTATTTATTAATGCATATATTTCCCCTGCTTGTTGTACAAGTAAGTTACTCTTTTCCTTTAATCTGTAAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ATTCATGAAATTCGGGGCCAGGGAAACAGTTTAGCCTTAGGGAAGGGAAAACACTAAGTGAAACTGTTTACAAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AACCTCATACAACCTTCTGTCCCATCTCCTGGTTCAGCCTAGGTGTTTCACTGGTCCTCTATGAATCCCAGCAC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTATAATCCCAGTCTTTTATCACTCAGGTGCTAGGAAAAAAAACATAGACTCAAGACCCAAGATTCAATGGACC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGGAGAAAGGGGGGCGGTGATCAGGTCACCAGTGACCCCAACCTATGCTCTCGGTCTTTCCTGGAGGCTGCCAA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CCCAGCCCTCATCCTCCCTTGCTCACAAAGTTACAGGGTAGGCACCTGTCAGGACAGAACAGCAGCAGCGCTAC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AGCCCAGAGGTTATACATTTCAACAGAACAGGGATCCTTGGCTACTGTAGAAGCAGTCCTGTATGGAGACCTTG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GACCAGCAGGGGAAGATCTATGGGCATGGGAGGTGGGCGTTGGAAAGGCTGAGTAGGAATGGTGCCTGGCACCC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CTGAACCATGATCTGAGCCTCCCTGGAGAAGGTATTTTATATGTCTGCTGCCAGCTGCTGGTCTCCACACCCTC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AACCGTTCTCAACCCCCCTGCAGGGAGAAGGCCTCCTGGGCACTGTCCTTCCACCTGTGCCAGCCACCCCCTGC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CCCACTGCTGAATGAAGGCCATTTCAAGCGCTGCTTCTCACTCCATTCCTCTCAGCTGTTATTGCTGCAGGGCC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AAGCCCTTTTTAGTGCTGTGCTCGTCCAGCTCACCACCACAGCCCCTCTCAGCCCTCAGTAGGTGGGAGGGGCC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AGCTGCCTCTTTAGGCCAGTTGCATCCTCCATTTATCCAAACCACTCCTCTCCTCCCAGTGGAGTGGGGTTCTG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CCAGTACAGCCCTACTGCATCATCTGCGTCAGCCGGTCCTAGCCCATCTGCAGGGTGAAAGAACTCATCAAGAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CTCCTTCTGCCCTTGTAAGCCCATCCCAGCTACTTGTAACCATCTCTAAGGGCAATGGCATTGCTCCCTACCCA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TTCATCTGCATGAGCTACTCTTGGCTTCCTTAAAGGGTCAAGAAAGCAATTTTTCTGCTTACTAGATTCATTGA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GATCAGCTGTGTGAGCCCCAAAGTGGGACAAGGGTGTCTCCTTCATTACTTAAAGATATTCATGAGGGTGGGTC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACTACAGATGTTGGGGAGCAAGGGCTAGGATCACTTTTTAAAAAATCACCACTTGTGGCTGTCCCAGAGTGCGG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TTGTACATCCTCCCCACCTCATAACGCAGCCACTGAGGAAGAGTGGTTTTCCTAAGAAGACATTGCTGGAGTTG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ACTTTCTTCTGTCCAAACAAACAAACAAAAACTAAACACACACACAAACCCCCAGAAACCCACAATATGTACAC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GCTAAGGAAAAACTAGCACCCTTCTGTCCACTCAGCAATAAGAGGGATCTCTTCCCACCTACCCTACCTACTCC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TACCCCCAACCCCCTTCCCCATTAATGTGAGTAATGAATTAGCCTGACCACAGGTGGTCACTGTAGGCTAATGG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AAAATACCCAAGGGAGGGCAAAGCCCCCCATCAGATGCATGAATGTTTGCGAATGTTGACTGCCACTGCCCCAC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ACACTGTGTCTTTATAGAATTCCCCTTTGCCCACCCTCTTCCTGTCTCCACCTGGACACAACTTGCTCAAAGGC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TGGTGACTTGTGGGCCATTCATCTACAACCAAGTCCTGATGGAGCAAGAGGCCCACGCCTAGGGGATGCAAGAA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CAACCCGTTTCTTAAATGTTACCAGTCCCAGCCAATCTTACGGTGACATTACAGTTAAATTTCCCAATTGAAAA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CAAGCAAACAGACACTCAAACTGGTCCTGTAATTGTTGCTAGACTTTATGTGTTGTACAACTAAACATTGCTGT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TTGAACAGTAACTGCCTGGCCTGTCTTATTTGTGCTCCTTGACCAAATCAGCCATTATGTCATCTCACCCATGT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GTGGAGGGTGAGACTCTCTTGGTAAGAAATAGCCACAGATATTAGAGATGAAAACACTTTGTGAGGTCAGTTCA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TCTTCAGTTGGCGTCAGGTCGGGCCTCAGTCATTATTTTCTAGTGTTTCATAACCAAAGTGAGTAATGGATGGG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 AGGTTGAGGTGGGAAGATGGCTTGAGCATGGGAGGTTGGAGGTGCAGTGAGCTGAGATCATTCCTGACAGGACC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AACCCAAGTCCATACCTAAAGGCAGGGGGCTAAGGGGGCAGGTGAGGTCGGGAGGCCACTCACCTATCACTCAC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CCCTTCGCGCTCGAGCCAATTCTCAGGGCCCGCCTCTTTCTCCCCTTTCTCGGCGGGGGCCTCTACCCTGACTC 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CGCCCCGCTCCCCGGGCACTGCCCCACCACGTGACCCGGTCTCGCTCCTCCTCCTCCTCCTCCTTACGTCATAA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TCTCCGCCCTCCCCTTCAGAACCGCGCCCCACAGCTCGGCGCAGGTCCCGCCCCTTTCCATCTACGGGGCGGCA 3700
Query 1 ----------------ATGGCGGTGAATCAGAGCCACACCGAGAACCGCCGCGGAGCCCTCATCCCTAACGGTG 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 GGAGGCCCGAAGCAAGATGGCGGTGAATCAGAGCCACACCGAGAACCGCCGCGGAGCCCTCATCCCTAACGGTG 3774
Query 59 AAAGTCTCTTGAAGCGGTCTCCGAATGTGGAGCTCTCCTTCCCACAGCGATCAGAAGGCTCAAATGTCTTTAGT 132
|||||.| ||.|||||.|
Sbjct 3775 AAAGTTT-------------------------CTGTCCTTGC-------------------------------- 3791
Query 133 GGTAGAAAGACAGGAACATTGTTTCTCACTTCATACCGGGTGATTTTCATAACTTCATGCTCCATCAGTGATCC 206
||| ||||||||||||||||||||||||||||||||||||
Sbjct 3792 -GTA----------------------------------GGTGATTTTCATAACTTCATGCTCCATCAGTGATCC 3830
Query 207 CATGTTGTCTTTTATGATGCCATTTGATCTGATGACGAACCTCACTGTTGAACAACCAGTATTTGCTGCAAACT 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3831 CATGTTGTCTTTTATGATGCCATTTGATCTGATGACGAACCTCACTGTTGAACAACCAGTATTTGCTGCAAACT 3904
Query 281 TCATTAAGGGAACTATTCAGGCAGCTCCATATGGTGGCTGGGAAGGACAAGCTACTTTTAAATTAGTCTTCAGA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3905 TCATTAAGGGAACTATTCAGGCAGCTCCATATGGTGGCTGGGAAGGACAAGCTACTTTTAAATTAGTCTTCAGA 3978
Query 355 AATGGAGGTGCCATTGAATTTGCCCAGTTGATGGTGAAAGCTGCCTCTGCTGCTGCCCGAGGATTTCCACTTAG 428
|||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3979 AATGGAGATGCCATTGAATTTGCCCAGTTGATGGTGAAAGCTGCCTCTGCTGCTGCCCGAGGATTTCCACTTAG 4052
Query 429 AACCTTAAATGACTGGTTCAGCTCTATGGGAATTTATGTAATTACTGGGGAAGGGAATATGTGCACTCCACAGA 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4053 AACCTTAAATGACTGGTTCAGCTCTATGGGAATTTATGTAATTACTGGGGAAGGGAATATGTGCACTCCACAGA 4126
Query 503 TGCCTTGTTCAGTTATTGTCTATGGAGCCCCACCTGCAGGATATGGAGCCCCACCTCCCGGATACGGAGCCCCA 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4127 TGCCTTGTTCAGTTATTGTCTATGGAGCCCCACCTGCAGGATATGGAGCCCCACCTCCCGGATACGGAGCCCCA 4200
Query 577 CCTGCAGGATATGGAGCCCAACCCGTAGGAAATGAAGGCCCGCCTGTGGGATACAGAGCCTCACCTGTGCGATA 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4201 CCTGCAGGATATGGAGCCCAACCCGTAGGAAATGAAGGCCCGCCTGTGGGATACAGAGCCTCACCTGTGCGATA 4274
Query 651 TGGAGCCCCACCTCTTGGATACGGAGCCCCACCTGCAGGATATGGAGCCCCACCTCTAGGATATGGAGCCCCAC 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4275 TGGAGCCCCACCTCTTGGATACGGAGCCCCACCTGCAGGATATGGAGCCCCACCTCTAGGATATGGAGCCCCAC 4348
Query 725 CTCTTGGATATGGAACCCCACCTCTCGGATATGGAGCCCCACCTCTCGGATATGGAGCCCCACCTGCAGGAAAT 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4349 CTCTTGGATATGGAACCCCACCTCTCGGATATGGAGCCCCACCTCTCGGATATGGAGCCCCACCTGCAGGAAAT 4422
Query 799 GAAGGCCCGCCTGCGGGATACAGAGCCTCACCTGCTGGATCAGGAGCCAGGCCTCACGAATCTACAGCAGCCCA 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 4423 GAAGGCCCGCCTGCGGGATACAGAGCCTCACCTGCTGGATCAGGAGCCAGGCCTCAGGAATCTACAGCAGCCCA 4496
Query 873 GGCTCCTGAAAACGAGGCTTCTCTTCCCTCTGCCTCCTCTTCTCAGGTCCATTCT------------------- 927
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4497 GGCTCCTGAAAACGAGGCTTCTCTTCCCTCTGCCTCCTCTTCTCAGGTCCATTCTTAACCTTCTAAGATGTAAA 4570
Query 928 -------------------------------------------------------------------------- 927
Sbjct 4571 CCTTGAAGACTCACCAAGCAAAGAGGTACCCTAAAATTGAAGTCAGGATAAGGAGGACGACTCAGCTTAGAGTC 4644
Query 928 -------------------------------------------------------------------------- 927
Sbjct 4645 ATTGATTGATCTGCATTGTGAAAATTAGGAAACCAGATGCTCCCATGTTCTCAAGGACAGCCTTTCTTAAGGAA 4718
Query 928 -------------------------------------------------------------------------- 927
Sbjct 4719 GTCAGTACGTGGGCAACAGTGATGAGAGGAAGAGAGGAGAGACTCAACCAACTAGAGCAGGGATAAGGTTTCCC 4792
Query 928 -------------------------------------------------------------------------- 927
Sbjct 4793 TTGTTCAGCTTTTCAGTGTCTGCTGGAATGTGATGATTACCTCATTGTCAGGTAGGAAGTGAAACGTATGATAT 4866
Query 928 -------------------------------------------------------------------------- 927
Sbjct 4867 TCTTCCTGGCCTTTGCCTTGAGAGTCTTCTGGAGCCTGAAGAGGGTGGGGCAGACAACCATGGACTGCTAGAGA 4940
Query 928 -------------------------------------------------------------------------- 927
Sbjct 4941 ATAAACTTTCTTTGAAGCTTCCTAAATGGATTAGAAAGAAGGGGTTCTGTCAAAGGGAAAGGGTCTATACAGAT 5014
Query 928 -------------------------------------------------------------------------- 927
Sbjct 5015 GTGACCAGCAGTTTGATTAGTTTAGATGTATGATTTAGTAGCCAATATAAGAAACTTGTAATTTTTAGTAATTA 5088
Query 928 ---------------------------------------- 927
Sbjct 5089 GAATTTATTATAAATAATAAAACAGGGTATTAATTATTAA 5128
