Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09779
Subject:
NM_001305671.1
Aligned Length:
2345
Identities:
1665
Gaps:
388

Alignment

Query    1  ATGATGGTTCAGCGACTGGGACTCATTTCACCTCCAGCAAGCCAGGTCTCTACAGCATGCAACCAGATCAGTCC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TAGCTTACAGAGGGCAATGAATGCAGCCAACCTGAATATACCTCCTTCAGATACCAGGTCCCTTATTTCGCGTG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AGTCTTTGGCGTCCACGACCTTGAGTCTGACGGAAAGTCAGTCGGCCTCAAGCATGAAGCAGGAGTGGTCCCAG  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  GGCTACAGGGCCCTCCCTTCGCTCTCCAACCACGGCTCTCAGAATGGCCTTGATCTAGGGGATCTCCTTAGCCT  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  TCCTCCCGGGACATCCATGTCCAGCAATAGTGTCTCTAACTCATTACCATCCTACCTTTTTGGCACGGAAAGTA  370
                                                                            |.|||||.||
Sbjct    1  ----------------------------------------------------------------ATGGAAAATA  10

Query  371  GCCACTCTCCTTACCCTAGTCCTCGGCACTCATCCACCAGGTCCCACTCGGCCCGCTCCAAGAAGAGAGCGCTG  444
            |||||||||||||||||||.||||||||||||.|.||||||.|||||||..|||||||.|||||||||||..||
Sbjct   11  GCCACTCTCCTTACCCTAGCCCTCGGCACTCAGCAACCAGGGCCCACTCCACCCGCTCTAAGAAGAGAGCATTG  84

Query  445  TCCTTGTCCCCGCTGTCCGATGGCATCGGGATAGATTTCAATACCATCATCCGCACGTCGCCCACGTCCTTGGT  518
            ||||||||.||.|||||.||||||||||||||.||.|||||.||.||||||||.||.||.|||||.||||||||
Sbjct   85  TCCTTGTCGCCACTGTCAGATGGCATCGGGATCGACTTCAACACTATCATCCGTACTTCACCCACATCCTTGGT  158

Query  519  GGCCTACATCAACGGGTCGAGGGCTTCGCCGGCCAACCTGTCCCCGCAGCCGGAGGTCTACGGGCATTTCCTGG  592
            .||||||||||||||..|.||.||.||.||.||||||||||||||.|||.|.||||||||.|||||||||||||
Sbjct  159  CGCCTACATCAACGGACCAAGAGCCTCCCCAGCCAACCTGTCCCCACAGTCAGAGGTCTATGGGCATTTCCTGG  232

Query  593  GCGTGCGCGGCAGCTGCATTCCCCAGCCGCGCCCGGTGCCCGGCAGCCAGAAGGGCGTGCTGGTGGCCCCTGGA  666
            |.||.||.|||||||||||.||||||.|..|..|.|||.||.||.|.|||||.|||.|..||||.|||..||||
Sbjct  233  GTGTTCGTGGCAGCTGCATCCCCCAGTCTTGTGCAGTGGCCAGCGGGCAGAAAGGCATATTGGTTGCCAGTGGA  306

Query  667  GGCCTGGCGCTGCCGGCCTACGGCGAGGACGGGGCCCTGGAGCACGAGCGCATGCAACAGCTGGAGCACGGCGG  740
            ||.|...|||||||||.|||.||.||||||||..|.||||||.|.||.||||||||.|||||.|||||.||.||
Sbjct  307  GGGCATACGCTGCCGGGCTATGGAGAGGACGGTACACTGGAGTATGAACGCATGCAGCAGCTTGAGCATGGTGG  380

Query  741  CCTGCAGCCAGG-CCTGGTCAACCACATGGTGGTGCAGCATGGCCTGCCGGGCCCCGACAGCCAGCCGGCCGGC  813
            ||||||.||.|| ||| ||.|||.||||||||.||||||.||||||.|||||||..||..|||||.|.|||..|
Sbjct  381  CCTGCAACCCGGACCT-GTAAACAACATGGTGTTGCAGCCTGGCCTACCGGGCCAGGATGGCCAGACAGCCAAC  453

Query  814  CTGTTCAAGACCGAACGCCTGGAGGAGTTCCCGGGCAGCACCGTAGACCTACCCCCCGCGCCTCCGCTCCCTCC  887
            .||.||||.||.||.|||||||||||||||||.|.|||..||.|.|||||.|||.|.||.|..||.|||   ||
Sbjct  454  ATGCTCAAAACAGAGCGCCTGGAGGAGTTCCCCGCCAGTGCCTTGGACCTGCCCTCTGCTCTGCCTCTC---CC  524

Query  888  TCTGCCGCCGCCCCAAGGCCCCCCACCCCCTTACCATGCCCATGCGCACCTTCACCACCCGGAGCTCGGGCCCC  961
            |||.||.|||||.||.||.|||||||||||.||||||||||||.|.||||||||.|||||.||||||..|||.|
Sbjct  525  TCTTCCTCCGCCTCAGGGTCCCCCACCCCCATACCATGCCCATCCACACCTTCATCACCCAGAGCTCCTGCCTC  598

Query  962  ACGCCCAGCAGCTGGCCTTGCCCCAGGCCACCCTGGACGACGACGGGGAGATGGACGGCATC-GGGGGCAAGCA  1034
            ||.||||...||||.||.||.|||||.|...||||||.||.||.|||||||||||.|.| || |||||.|||||
Sbjct  599  ACACCCAATCGCTGTCCCTGGCCCAGACTGGCCTGGAAGAGGATGGGGAGATGGAAGAC-TCAGGGGGGAAGCA  671

Query 1035  TTGCTACCGCTGGATCGACTGCAGCGCCCTGTACGACCAGCAGGAGGAGCTCGTGCGGCACATCGAGAAGGTCC  1108
            .||||.|||.|||||.||||||||.|||||.||.||||||||||||||.||.|||.||||||||||||||||||
Sbjct  672  CTGCTGCCGTTGGATAGACTGCAGTGCCCTTTATGACCAGCAGGAGGAACTGGTGAGGCACATCGAGAAGGTCC  745

Query 1109  ACATCGACCAGCGCAAAGGGGAGGACTTCACTTGCTTCTGGGCCGGTTGCCCTCGAAGATACAAGCCCTTCAAC  1182
            ||||.|||||.|||||.|||||.||||||||.|||||||||.|.||.||||||.|||||||||||||.||||||
Sbjct  746  ACATAGACCAACGCAAGGGGGAAGACTTCACGTGCTTCTGGACTGGCTGCCCTAGAAGATACAAGCCTTTCAAC  819

Query 1183  GCCCGCTATAAACTGCTGATCCACATGAGAGTCCACTCTGGGGAGAAGCCCAACAAGTGTACGTTTGAAGGTTG  1256
            ||.||.|||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||.||
Sbjct  820  GCACGGTATAAACTGCTGATCCACATGAGGGTCCACTCTGGGGAGAAGCCCAACAAGTGTACGTTCGAAGGCTG  893

Query 1257  CGAGAAGGCCTTTTCAAGGCTTGAAAATCTCAAGATCCACTTGCGGAGCCACACAGGCGAGAAGCCGTATTTGT  1330
            |.|||||||||||||.|||||.||.||.||||||||.|||||||||||||||||.||.||||||||.||.||||
Sbjct  894  CAAGAAGGCCTTTTCCAGGCTCGAGAACCTCAAGATTCACTTGCGGAGCCACACGGGTGAGAAGCCATACTTGT  967

Query 1331  GCCAGCATCCGGGTTGTCAGAAGGCCTTCAGTAACTCCAGTGACCGCGCCAAACACCAGCGGACGCATCTGGAC  1404
            |||||||||||||.||.||.|||||||||||.||.|||||||||||.|||||.||||||.||||.|||||.|||
Sbjct  968  GCCAGCATCCGGGCTGCCAAAAGGCCTTCAGCAATTCCAGTGACCGTGCCAAGCACCAGAGGACACATCTTGAC  1041

Query 1405  ACCAAACCTTATGCTTGTCAAATTCCAGGATGTACCAAACGCTACACAGACCCAAGTTCCCTAAGAAAGCATGT  1478
            ||.||||||||||||||||||||||||||||||||.||.|||||||||||||||||.|||||.||||||||.||
Sbjct 1042  ACTAAACCTTATGCTTGTCAAATTCCAGGATGTACAAAGCGCTACACAGACCCAAGCTCCCTCAGAAAGCACGT  1115

Query 1479  GAAGGCACATTCTTCCAAAGAGCAACAAGCAAGGAAAAAGTTGCGGTCCAGCACAGAGCTCCATCCAGACCTGC  1552
            ||||||||||||||||..||||||.|||||||||||||||.|.|||||.|||||.||||||||||||||.||.|
Sbjct 1116  GAAGGCACATTCTTCCCGAGAGCAGCAAGCAAGGAAAAAGCTACGGTCTAGCACTGAGCTCCATCCAGATCTCC  1189

Query 1553  TCACAGATTGCCTCACCGTGCAGTCCCTGCAGCCGGCCACTTCCCCTAGAGATGCTGCTGCTGAAGGGACCGTG  1626
            |||||||.||||||.|.||||||.||||||||||.|||||.||||||.||||||||||||.|.|   .||||||
Sbjct 1190  TCACAGACTGCCTCGCTGTGCAGCCCCTGCAGCCAGCCACGTCCCCTGGAGATGCTGCTGATCA---TACCGTG  1260

Query 1627  GGACGCTCCCCTGGACCCGGGC------------------CTGACCTCTATTCAGCTCCCATTTTCTCCAGCAA  1682
            ||.|.||||||.||.||.||||                  ||||.|||||||||||||||||||||.|||||||
Sbjct 1261  GGGCACTCCCCAGGGCCGGGGCCTGGGCCAGGGCCTGGGGCTGAACTCTATTCAGCTCCCATTTTCGCCAGCAA  1334

Query 1683  TTATTCAAGCCGAAGTGGAACAGCTGCTGGGGCCGTACCACCCCCACATCCTGTCAGTCACCCTTCTCCAGGAC  1756
            |.||||||..|||||||||||||||||||||||.|..|||||||||||||||||||||||||||||||||||||
Sbjct 1335  TCATTCAACTCGAAGTGGAACAGCTGCTGGGGCTGGGCCACCCCCACATCCTGTCAGTCACCCTTCTCCAGGAC  1408

Query 1757  ATAATGTACAGGGGAGCCCTCACAACCCCTCCTCCCAGTTACCTCCACTCACAGCTGTGGACGCAGGAGCTGAG  1830
            |||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 1409  ATAATGTACAGGGGAGCCCCCACAACCCCTCCTCCCAGTTACCTCCACTCACAGCTGTGGACGCAGGCGCTGAG  1482

Query 1831  AGGTTTGCACCTTCTGCTCCATCTCCTCACCACATCAGCCCCCGGAGAGTTCCAGCTCCTTCTTCAATACTGCA  1904
            ||||||||||||.|..|||||||||||||||||||||||||..|.|||||||||||||||.|.|||.|.||.||
Sbjct 1483  AGGTTTGCACCTCCGACTCCATCTCCTCACCACATCAGCCCGGGAAGAGTTCCAGCTCCTCCGTCACTGCTCCA  1556

Query 1905  AAGAACACAGCCTCCCTATACCCAGCAGCCATCAGGTTCACACCTGAAGTCCTATCAGCCAGAAACAAACTCTT  1978
            .|||.|||||.|||||.|..|||||||||||.||||.||||.|||||||.||||.|||||||||||.|||||||
Sbjct 1557  GAGAGCACAGGCTCCCCACTCCCAGCAGCCACCAGGCTCACTCCTGAAGCCCTACCAGCCAGAAACCAACTCTT  1630

Query 1979  CTTTTCAACCAAATGGTATCCATGTCCATGGATTTTATGGGCAGCTGCAGAAGTTCTGTCCCCCACACTACCCC  2052
            |||||||.||||||||||||||||||||.|||||||||||.||||||||||..|||||||||||.||.||.||.
Sbjct 1631  CTTTTCAGCCAAATGGTATCCATGTCCACGGATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCT  1704

Query 2053  GATTCCCAGAGAATTGTGCCGCCTGTCAGCTCCTGCAGTGTGGTGCCTTCGTTTGAGGACTGCCTAGTCCCTAC  2126
            ||||||||.||||.||||||.||...|.|||||||||||.||||||||||.||||||||||||||.|||||.||
Sbjct 1705  GATTCCCAAAGAACTGTGCCACCCAGCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCAC  1778

Query 2127  ATCCATGGGCCAGGCCAGTTTTGATGTTTTCCACAGAGCCTTCTCGACTCACTCGGGCATTACAGTGTATGATT  2200
            .||||||||.||.|||.||||||||||||||||||||||||||||.||.|||||.|||||.||||||||.||||
Sbjct 1779  GTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAGTGTACGATT  1852

Query 2201  TACCTTCAAGTTCCTCGAGCCTCTTTGGGGAGTCTCTCCGCAGCGGGGCTGAAGATGCTACCTTCTTGCAGATC  2274
            |.||||||..||||||.||||||||||||||.|||||.|||||.||..|||||||..|.||.|||||||||.||
Sbjct 1853  TGCCTTCAGCTTCCTCAAGCCTCTTTGGGGAATCTCTTCGCAGTGGCCCTGAAGACCCCACGTTCTTGCAGCTC  1926

Query 2275  AGCACCGTGGACCGCTGTCCTAGCCAGCTCTCCTCTGTCTGCACCGAAGGC  2325
            ||..|.||||||||||||||||||||||||||||||||.|..|||||||||
Sbjct 1927  AGTGCTGTGGACCGCTGTCCTAGCCAGCTCTCCTCTGTGTATACCGAAGGC  1977

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