Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09779
Subject:
XR_929206.2
Aligned Length:
3765
Identities:
1747
Gaps:
1875

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CGGCCCTCGCGGCCGCACACACATCCACACTCCTCGCCCGGCTGCCTTCCTCCCTCCCTCTTCCCCCTTCCCCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTCCCTGCAGCCGCGTCCACACTGCGCCGCCCGGGCAGCCCAGAGCGCGGCGCGCACGGGCACCGGCGGCGAGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCCGCGGCCACTGCCCCTCCCGGGACCCCCTGTACGCCGTCCGCGCCGTCCAGGGTCACACCGGCGACGGAACC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGCCGGCAGCAATTAGCCAGCATCCCGGGGTCGGCCCCCAGAAGCATTCCCCGGCCCAGGACGAGGATGAACAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GACAGGCGAGGCACAAAGTCGCAACTGAACTTTTTAGAAACATTATTTGTGTGTGTATGTGTGTAGCAGGGGAG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AATGAGCTGATGCCGAGGGTCCAGCCACCCCGCCTCTGCCTCCTCCTCCCCCTGCCGCCGCTGCCCTCGCAGAC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GCGCGCGCACACACGGCACTTGGGCCGGGTTTCCGCGCTCCGTCCCCCCGTTTGGATGGGGGTTTTCATTTCCG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AAGGAGGCACAGCCCGCGGAGCGCTCTGAAGGGCTGGAGCCCCAAGTTACTCCTCGCCAGCGCCGGCCGCCCGC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TGTCACTCGCGCTGGCCGGCCGGGGGAAGGGACCCGCACGCCGGGCTTTGTTGTGGAAATCCCGGTTACCTGGC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTATAACCCACACCATGGATAACTTATTGGACTTTGCCTGAAAGGAGTCATTAGTGACATTGGATATTTGACCG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TCTTGGCCACAGGTTTTTCAGAATGAATGGAAGATCATGCAGCATGAGTCTCCACCGGACATCGGGAACCCCAC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AGGGGCCTAGGATGGTCAGTGGTCATCACATTCCTGCCATCCGAGCCCACTCCGGGACTCCTGGCCCCTCGCCC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TGTGGCAGCACATCGAGTCCCACTATGGCAAGCCTTGCTAACAACCTCCATCTCAAGATGCCCTCAGGAGGAGG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GATGGCTCCTCAGAACAACGTGGCTGAGAGCCGCATCCATCTGCCTGCCTTAAGCCCCAGGAGACAAATGCTCA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CCAATGGGAAGCCGCGATTCCAGGTCACCCAGGCTGGAGGCATGTCAGGGTCACATACTTTAAAGCCAAAGCAG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CAGGAGTTTGGAAGCCCTTTTCCTCCAAATCCTGGGAAAGGGGCTCTTGGCTTTGGGCCTCAGTGCAAGTCCAT  1184

Query    1  -------------------------------------------ATGATGGTTCAGCGACTGGGACTCATTTCAC  31
                                                       |||||||||||||||||||||||||||||||
Sbjct 1185  TGGAAAAGGCAGCTGCAACAATCTAGTGGTCACCAGCAGTCCCATGATGGTTCAGCGACTGGGACTCATTTCAC  1258

Query   32  CTCCAGCAAGCCAGGTCTCTACAGCATGCAACCAGATCAGTCCTAGCTTACAGAGGGCAATGAATGCAGCCAAC  105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CTCCAGCAAGCCAGGTCTCTACAGCATGCAACCAGATCAGTCCTAGCTTACAGAGGGCAATGAATGCAGCCAAC  1332

Query  106  CTGAATATACCTCCTTCAGATACCAGGTCCCTTATTTCGCGTGAGTCTTTGGCGTCCACGACCTTGAGTCTGAC  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CTGAATATACCTCCTTCAGATACCAGGTCCCTTATTTCGCGTGAGTCTTTGGCGTCCACGACCTTGAGTCTGAC  1406

Query  180  GGAAAGTCAGTCGGCCTCAAGCATGAAGCAGGAGTGGTCCCAGGGCTACAGGGCCCTCCCTTCGCTCTCCAACC  253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GGAAAGTCAGTCGGCCTCAAGCATGAAGCAGGAGTGGTCCCAGGGCTACAGGGCCCTCCCTTCGCTCTCCAACC  1480

Query  254  ACGGCTCTCAGAATGGCCTTGATCTAGGGGATCTCCTTAGCCTTCCTCCCGGGACATCCATGTCCAGCAATAGT  327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  ACGGCTCTCAGAATGGCCTTGATCTAGGGGATCTCCTTAGCCTTCCTCCCGGGACATCCATGTCCAGCAATAGT  1554

Query  328  GTCTCTAACTCATTACCATCCTACCTTTTTGGCACGGAAAGTAGCCACTCTCCTTACCCTAGTCCTCGGCACTC  401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GTCTCTAACTCATTACCATCCTACCTTTTTGGCACGGAAAGTAGCCACTCTCCTTACCCTAGTCCTCGGCACTC  1628

Query  402  ATCCACCAGGTCCCACTCGGCCCGCTCCAAGAAGAGAGCGCTGTCCTTGTCCCCGCTGTCCGATGGCATCGGGA  475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  ATCCACCAGGTCCCACTCGGCCCGCTCCAAGAAGAGAGCGCTGTCCTTGTCCCCGCTGTCCGATGGCATCGGGA  1702

Query  476  TAGATTTCAATACCATCATCCGCACGTCGCCCACGTCCTTGGTGGCCTACATCAACGGGTCGAGGGCTTCGCCG  549
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  TAGATTTCAATACCATCATCCGCACGTCGCCCACGTCCTTGGTGGCCTACATCAACGGGTCGAGGGCTTCGCCG  1776

Query  550  GCCAACCTGTCCCCGCAGCCGGAGGTCTACGGGCATTTCCTGGGCGTGCGCGGCAGCTGCATTCCCCAGCCGCG  623
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GCCAACCTGTCCCCGCAGCCGGAGGTCTACGGGCATTTCCTGGGCGTGCGCGGCAGCTGCATTCCCCAGCCGCG  1850

Query  624  CCCGGTGCCCGGCAGCCAGAAGGGCGTGCTGGTGGCCCCTGGAGGCCTGGCGCTGCCGGCCTACGGCGAGGACG  697
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  CCCGGTGCCCGGCAGCCAGAAGGGCGTGCTGGTGGCCCCTGGAGGCCTGGCGCTGCCGGCCTACGGCGAGGACG  1924

Query  698  GGGCCCTGGAGCACGAGCGCATGCAACAGCTGGAGCACGGCGGCCTGCAGCCAGGCCTGGTCAACCACATGGTG  771
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  GGGCCCTGGAGCACGAGCGCATGCAACAGCTGGAGCACGGCGGCCTGCAGCCAGGCCTGGTCAACCACATGGTG  1998

Query  772  GTGCAGCATGGCCTGCCGGGCCCCGACAGCCAGCCGGCCGGCCTGTTCAAGACCGAACGCCTGGAGGAGTTCCC  845
            |||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  GTGCAGCATGGCCTGCCGGGCCCCGACAGCCAGTCGGCCGGCCTGTTCAAGACCGAACGCCTGGAGGAGTTCCC  2072

Query  846  GGGCAGCACCGTAGACCTACCCCCCGCGCCTCCGCTCCCTCCTCTGCCGCCGCCCCAAGGCCCCCCACCCCCTT  919
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 2073  GGGCAGCACCGTAGACCTACCCCCCGCGCCTCCGCTCCCTCCTCTGCCGCCGCCCCCAGGCCCCCCACCCCCTT  2146

Query  920  ACCATGCCCATGCGCACCTTCACCACCCGGAGCTCGGGCCCCACGCCCAGCAGCTGGCCTTGCCCCAGGCCACC  993
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  ACCATGCCCATGCGCACCTTCACCACCCGGAGCTCGGGCCCCACGCCCAGCAGCTGGCCTTGCCCCAGGCCACC  2220

Query  994  CTGGACGACGACGGGGAGATGGACGGCATCGGGGGCAAGCATTGCTACCGCTGGATCGACTGCAGCGCCCTGTA  1067
            ||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct 2221  CTGGACGACGACGGGGAGATGGACGGCATCGGGGGCAAGCATTGCTGCCGCTGGATCGACTGCAGCGCCCTGTA  2294

Query 1068  CGACCAGCAGGAGGAGCTCGTGCGGCACATCGAGAAGGTCCACATCGACCAGCGCAAAGGGGAGGACTTCACTT  1141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  CGACCAGCAGGAGGAGCTCGTGCGGCACATCGAGAAGGTCCACATCGACCAGCGCAAAGGGGAGGACTTCACTT  2368

Query 1142  GCTTCTGGGCCGGTTGCCCTCGAAGATACAAGCCCTTCAACGCCCGCTATAAACTGCTGATCCACATGAGAGTC  1215
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  GCTTCTGGGCCGGTTGCCCTCGAAGATACAAGCCCTTCAACGCCCGCTATAAACTGCTGATCCACATGAGAGTC  2442

Query 1216  CACTCTGGGGAGAAGCCCAACAAGTGTACG-----TTTGAAGGTTGCGAGAAGGCCTTTTCAAG-GCTTGAA--  1281
            ||||||||||||||||||||||||||||||     |||   |||||.||       ||||||.| ||||.||  
Sbjct 2443  CACTCTGGGGAGAAGCCCAACAAGTGTACGGTATTTTT---GGTTGAGA-------TTTTCACGTGCTTAAAGC  2506

Query 1282  -----AATCTCAAG-ATCCACTTGCGGAGCCACACAGGCGA----GAAGCCGTATTTGTGCCAGCATCCGGGTT  1345
                 |.|...||| |||||    ||||     ||||..||    ||||                |.||     
Sbjct 2507  CATTGATTGGGAAGCATCCA----CGGA-----ACAGATGATCTGGAAG----------------AACC-----  2550

Query 1346  GTCAGAAGGCCTTCAG-TAACTCCAGTGACCGCGCCAAACACCAGCGGACGCATCTGGACACCAAACCTTATGC  1418
              ||||    .||||| ||..|.|||                        |.|.|||                 
Sbjct 2551  --CAGA----GTTCAGATATTTGCAG------------------------GAAACTG-----------------  2577

Query 1419  TTGTCAAATT---CCAGGATGTACCAAACGCTACACA-GACCCAAGTTCCCTAAGAAAGCATGTGAAGGCACAT  1488
                  ||||   |.||||||               | ||            ||.|||||| .||||   .||.
Sbjct 2578  ------AATTCAACGAGGATG---------------ATGA------------AAAAAAGCA-ATGAA---TCAC  2614

Query 1489  TCTTCCAAAGAGCAACA-AGCAAGGAAAAAGTT-GCGGTCCAGCACAGAGCTCCATCCAGACCTGCTCACAGAT  1560
            ||||   ||||.|.|.| ||| ||.|||   || .||.|.||..|||.||.|       |||||    ||| ||
Sbjct 2615  TCTT---AAGAACTAGACAGC-AGCAAA---TTATCGATTCAATACACAGTT-------GACCT----ACA-AT  2669

Query 1561  TGCCTCACCGTGCAGTCCCTGCAGCCGGCCACTTCCCCTAGAGAT-------------GCTGC---------TG  1612
            |.|        .||||..||                    |||||             ||.||         ||
Sbjct 2670  TCC--------ACAGTTTCT--------------------GAGATGAGGTATTATAAGGCAGCATAGCATAGTG  2715

Query 1613  CTGAAGGGACCGTGGGACGCTCCCCTGGACCCGG---GCCTGACCTCTATTCA----GCTCCCATTTTCTCCAG  1679
            .|.||  ||.|||||      .|.|||||.||.|   |||||...|..|.|||    .||.|||.||       
Sbjct 2716  ATTAA--GAGCGTGG------ACTCTGGAGCCAGACTGCCTGGATTTAAATCATGACTCTGCCACTT-------  2774

Query 1680  CAATTATTCAAGCCGAAGTGGAACA-GCTGCTGGGGCC-----------GTACCAC------CCCCA-------  1728
                                  ||| |||| ||.||||           .|.||||      ||.||       
Sbjct 2775  ----------------------ACAGGCTG-TGAGGCCAGCATGTTACTTTTCCACTTAGTACCTCATTTTTCT  2825

Query 1729  CATCCTGTCAGTCACCCTTCTCCAGGACA---TAATGTACAGGGGAGC-----CCTCACAACCCC----TCCTC  1790
            ||| ||||.|.|          .||||.|   .|||.||||.|...||     ||.||.|||..|    |..||
Sbjct 2826  CAT-CTGTAAAT----------GAGGATAATTAAATATACATGCAGGCATGTGCCACATAACAACATGTTGGTC  2888

Query 1791  CCA-----GTTACCTCCACTCACAGCTGTGGACGC------------AGGAGCTGAGAGGTT----TGCACCTT  1843
            ..|     |.||..|.|||..|||.|.||||.|.|            |||||||||.|..||    | |||||.
Sbjct 2889  AAAGAGTGGCTATGTACACATACAACAGTGGCCCCATAAGATTATAAAGGAGCTGAAAAATTCCTAT-CACCTA  2961

Query 1844  CTG-CTCCATCTCCTCA--CCACATCAGCCCCCGGAGAGTTCCAGCTCCTTCTTCA--------------ATAC  1900
            ||| |..||| |.||.|  .|||||||     .||||     ||..||.||.||||              ||.|
Sbjct 2962  CTGACGTCAT-TGCTAATGTCACATCA-----TGGAG-----CAATTCATTATTCACGTGCATGGGGGTGATTC  3024

Query 1901  TGCAAAGAACACAGCCTCCCTATACCCAGCAGCCATCAGGTTCACACCTGAAGTC-CTATCAGCCAG----AAA  1969
            ||....|||||.|     |||||                             ||| ||    |||||    |.|
Sbjct 3025  TGGTGTGAACAAA-----CCTAT-----------------------------GTCACT----GCCAGTTGTATA  3060

Query 1970  CAAACTCTTCTTTTCAACCAAATGGTATCCATGTCCATGGATTTTATGGGCAGCTGCAGAAGTTCTGTCCCCCA  2043
            .|||         |.||.||.||             ||.|   |||||..|||                 |.||
Sbjct 3061  AAAA---------TAAAGCACAT-------------ATAG---TTATGTACAG-----------------CACA  3092

Query 2044  CACTACCCCGATTCCCAGAGAAT-----TGTGCCGCCTGTCAGCTCCTGCAGTGTGGTGCCTTCGTTTGAGGAC  2112
            .|.|||     ||    ||.|||     |.||     |||       |||.||            |||..|.|.
Sbjct 3093  TAATAC-----TT----GATAATAAAAATCTG-----TGT-------TGCTGT------------TTTATGTAT  3133

Query 2113  TGCCTAGTCCCTAC-ATCCATGGGCCAGGCCAGTTTTGA----TGTTTTCCACAGAG------CCTTCTCGACT  2175
            |..|||     ||| ||.|             ||||| |    |.||||    ||||      ||||||     
Sbjct 3134  TTACTA-----TACTATAC-------------GTTTT-ATTATTATTTT----AGAGTGCTTTCCTTCT-----  3179

Query 2176  CACTCGGGCATTACAGTGTAT----GATTTACCTTCAAGTT-------CCTCGAGCCTC--TTTGGGGAGTCTC  2236
                           ||.|||    ||         |||||       |    ||||||  .|||        |
Sbjct 3180  ---------------GTTTATAAAAGA---------AAGTTAATAAAAC----AGCCTCAGGTTG--------C  3217

Query 2237  TCCG-CAGCGGGG-----CTGAAGA------TGCTACCTTCTTGCAGATCAGCACCGTGGACCGCTGTCCTAGC  2298
            |||| || .|.||     |..||||      ||.||  ||.|.|.||||          |||.|||       |
Sbjct 3218  TCCGTCA-AGAGGTATTTCAAAAGAAAGCATTGTTA--TTATGGGAGAT----------GACAGCT-------C  3271

Query 2299  CA-GCTCTCCTCTGT--CTGCACC-GAAGGC----------------------------------  2325
            || |||      |||  ||||.|| ||||.|                                  
Sbjct 3272  CAGGCT------TGTTACTGCCCCTGAAGACCCTCCAGTGGGATGAGATGTGGAGGTGGAAGACA  3330

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