Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09801
Subject:
XR_946573.2
Aligned Length:
4059
Identities:
2042
Gaps:
2016

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACTGTCCCTGTATCCAGCTCACCCCCAGGGACCACTGGGCACCTGGTCCATCACATTTTCCTGATGTTTCTAAT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCTGCCCCTCCTGCATCCCTGTTCGTCTGATAAACTTGCCTTTAAACGTGTATATGAAGGACTCTTCCTCTGGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ATCTAATCCTAACAGGTGCTAGATCCCACAGAGCCCTGTCCAGCTGGGGACTATGCTGACCTCTCTCCCAGATC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AATATCCCTCTCCTCGGGGCTCAGCCTGGCCAGTGCCTGATGTTCTGGGATAGGAGAACTGGGGAGAGAAGGCC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TAGGACCCTGCCTCTCACTTTTCTTTCCACCAAAAGGGGAAAAAAGAGGATCTGGTCCTCACACCCAGCCTTGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GATACTTATAAGATGCTGGGGATAGGGTGTGGGACAGGGCCAGTGAGAGCTGGGGATGGGGTGTGGGACAGGGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CAGTGAGATCTGTTTTCCTGCTGCTCCAGTCTGGGCCCTACAGCAGATGCATGCAGAGTAATATTTGTAAGACT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GAAATATTCCAAATGCAGCTACTTTGGAAGGACCATGTGAGCAGATATCTAAGTGCGTGGCATCTGGGCCCCTT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GGCTAGATGGTGGTCGATGTTGGTTTCTTTGTGTTAACCCCAAGAACATTCAGTAGCTCAGGGTTTGCAGAGGT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TCTCAGGAGCACATCTTAGCCTCATTGGTGGTGTGAGGCAGGCAGGGCACAGGTCACACTGATGAGGACACCCG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GGCCCAGAGACATTTAGCAACCTGCCCAAGGGCATCTGTAGTTCAGTGAGAGGTGGAGCTGGGACTGAAATCTA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GGCTGCCTGAGTCCCAGAGATGGTCTTCCCTGGACCCAGGGAGCACTGTATCTTTTTCAGGGAAGGCCTCCTGA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CCACAACCATTTCATCTGTCACAGTACAGAATAGGAAGTATGGGTCAGGCATCAGAAGATGTGAATTCTGGCTC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TGCCTTTTCAGAGATGGCCCTGCCTAGTTCCTTGGAATAAATGATGATGTCTTCCCCAGCCTCAGTTTCCTACA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CTATATAAAAAGAGAAAGCAACATCTAGGTAGGTTGGAATGGGAGTACATGAGGTGGTGGCCACTTTGCTAGGG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TCACAGTAGACTCCTCACCTCCTTCCCCTTGTCTTCCTCTCACTAGGTAAAAGACAATTGTATTGAACTCTTAA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GAAAATTGGACTCCAGTCCCGGCTCCACCTTTACTTCCCTGGGCCTTGGTTTTCCCACCACACAGGAGTTTGAA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CACTTTGATTTCTGAAGTCCTTCCCACCTCTGGGGTTCCAATATTCTGCTCCTTTTCTCCTCTTCCTCCTCCCC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CTCCTTTCTCCTCCTGCTCATCTGGGGTTAGGGAGATTGCGTGTATGTGTGTGCCTGTGTGTACACATGCATGT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ATGTGTGTGCACGTAGTGGCAGCAAGGAAGAGGAAGGAAGGAGTCCTGCAGGGGTTGGTGGTGGCAGTTGGGAG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AAAAGGAGGCAGGACTGTATGTGCCAGCAGGGCTCAGAGTTTTCTCACCAACTAATGGTGCTTGGGGCAGTTTA  1554

Query    1  ---------------------------------------------------------------------ATGAG  5
                                                                                 |||||
Sbjct 1555  ATCATTAAAGGAAAGGAATGAAGCCAGGAGCGCCTCAAAGTCCAGCCTGCTGTTGACCAACACTAACAGATGAG  1628

Query    6  CAAGGAGCTGGCAGCAATGGGGCCTGGAGCTTCAGGGGACGGGGTCAGGACTGAGACAGCTCCACACATAGCAC  79
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  CAAGGAGCTGGCAGCAATGGGGCCTGGAGCTTCAGGGGACGGGGTCAGGACTGAGACAGCTCCACACATAGCAC  1702

Query   80  TGGACTCCAGAGTTGGTCTGCACGCCTACGACATCAGCGTGGTGGTCATCTACTTTGTCTTCGTCATTGCTGTG  153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  TGGACTCCAGAGTTGGTCTGCACGCCTACGACATCAGCGTGGTGGTCATCTACTTTGTCTTCGTCATTGCTGTG  1776

Query  154  GGGATCTGGTCGTCCATCCGTGCAAGTCGAGGGACCATTGGCGGCTATTTCCTGGCCGGGAGGTCCATGAGCTG  227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GGGATCTGGTCGTCCATCCGTGCAAGTCGAGGGACCATTGGCGGCTATTTCCTGGCCGGGAGGTCCATGAGCTG  1850

Query  228  GTGGCCAATTGGAGCATCTCTGATGTCCAGCAATGTGGGCAGTGGCTTGTTCATCGGCCTGGCTGGGACAGGGG  301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  GTGGCCAATTGGAGCATCTCTGATGTCCAGCAATGTGGGCAGTGGCTTGTTCATCGGCCTGGCTGGGACAGGGG  1924

Query  302  CTGCCGGAGGCCTTGCCGTAGGTGGCTTCGAGTGGAAC------------------------------------  339
            ||||||||||||||||||||||||||||||||||||||                                    
Sbjct 1925  CTGCCGGAGGCCTTGCCGTAGGTGGCTTCGAGTGGAACATGAGGAAATCAAGGTCTGGAGGAGACAGAGGGATC  1998

Query  340  --------------------------------------------------------------------------  339
                                                                                      
Sbjct 1999  CATCCAAGGTCACACGGGAGGACTGGGGTCAGGTCCCAGGTCTCTTATTTCTCTGTTCGGGGGCCTCCCACAGC  2072

Query  340  --------------------------------------------------------------------------  339
                                                                                      
Sbjct 2073  ACAGCACTGCCTCTGGGTGGGAAGCCGCCCCTCTGTCTACATCCAGGACCTGGATACCTTCTTCTTCTCCCCAC  2146

Query  340  --------GCAACCTGGCTGCTCCTGGCCCTTGGCTGGGTCTTCGTCCCTGTGTACATCGCAGCAGGTGTGGTC  405
                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  TCTCCCAGGCAACCTGGCTGCTCCTGGCCCTTGGCTGGGTCTTCGTCCCTGTGTACATCGCAGCAGGTGTGGTC  2220

Query  406  ACAATGCCGCAGTATCTGAAGAAGCGATTTGGGGGCCAGAGGATCCAGGTGTACATGTCTGTCCTGTCTCTCAT  479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  ACAATGCCGCAGTATCTGAAGAAGCGATTTGGGGGCCAGAGGATCCAGGTGTACATGTCTGTCCTGTCTCTCAT  2294

Query  480  CCTCTACATCTTCACCAAGATCTCGACTGACATCTTCTCTGGAGCCCTCTTCATCCAGATGGCATTGGGCTGGA  553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  CCTCTACATCTTCACCAAGATCTCGACTGACATCTTCTCTGGAGCCCTCTTCATCCAGATGGCATTGGGCTGGA  2368

Query  554  ACCTGTACCTCTCCACAGGGATCCTGCTGGTGGTGACTGCCGTCTACACCATTGCAGGTGGCCTCATGGCCGTG  627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  ACCTGTACCTCTCCACAGGGATCCTGCTGGTGGTGACTGCCGTCTACACCATTGCAGGTGGCCTCATGGCCGTG  2442

Query  628  ATCTACACAGATGCTCTGCAGACGGTGATCATGGTAGGGGGAGCCCTGGTCCTCATGTTTCTGGGCTTTCAGGA  701
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  ATCTACACAGATGCTCTGCAGACGGTGATCATGGTAGGGGGAGCCCTGGTCCTCATGTTTCTGGGCTTTCAGGA  2516

Query  702  CGTGGGCTGGTACCCAGGCCTGGAGCAGCGGTACAGGCAGGCCATCCCTAATGTCACAGTCCCCAACACCACCT  775
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  CGTGGGCTGGTACCCAGGCCTGGAGCAGCGGTACAGGCAGGCCATCCCTAATGTCACAGTCCCCAACACCACCT  2590

Query  776  GTCACCTCCCACGGCCCGATGCTTTCCACATGCTTCGGGACCCTGTGAGCGGGGACATCCCTTGGCCAGGTCTC  849
            |||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  GTCACCTCCCACGGCCCGATGCTTTCCACATTCTTCGGGACCCTGTGAGCGGGGACATCCCTTGGCCAGGTCTC  2664

Query  850  ATTTTCGGGCTCACAGTGCTGGCCACCTGGTGTTGGTGCACAGACCAGGTCATTGTGCAGCGGTCTCTCTCGGC  923
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  ATTTTCGGGCTCACAGTGCTGGCCACCTGGTGTTGGTGCACAGACCAGGTCATTGTGCAGCGGTCTCTCTCGGC  2738

Query  924  CAAGAGTCTGTCTCATGCCAAGGGAGGCTCCGTGCTGGGGGGCTACCTGAAGATCCTCCCCATGTTCTTCATCG  997
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739  CAAGAGTCTGTCTCATGCCAAGGGAGGCTCCGTGCTGGGGGGCTACCTGAAGATCCTCCCCATGTTCTTCATCG  2812

Query  998  TCATGCCTGGCATGATCAGCCGGGCCCTGTTCCCAGACGAGGTGGGCTGCGTGGACCCTGATGTCTGCCAAAGA  1071
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813  TCATGCCTGGCATGATCAGCCGGGCCCTGTTCCCAGACGAGGTGGGCTGCGTGGACCCTGATGTCTGCCAAAGA  2886

Query 1072  ATCTGTGGGGCCCGAGTGGGATGTTCCAACATTGCCTACCCTAAGTTGGTCATGGCCCTCATGCCTGTTGGTCT  1145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887  ATCTGTGGGGCCCGAGTGGGATGTTCCAACATTGCCTACCCTAAGTTGGTCATGGCCCTCATGCCTGTTGGTCT  2960

Query 1146  GCGGGGGCTGATGATTGCCGTGATCATGGCCGCTCTCATGAGCTCACTCACCTCCATCTTCAACAGCAGCAGCA  1219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961  GCGGGGGCTGATGATTGCCGTGATCATGGCCGCTCTCATGAGCTCACTCACCTCCATCTTCAACAGCAGCAGCA  3034

Query 1220  CCCTGTTCACCATTGATGTGTGGCAGCGCTTCCGCAGGAAGTCAACAGAGCAGGAGCTGATGGTGGTGGGCAG-  1292
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct 3035  CCCTGTTCACCATTGATGTGTGGCAGCGCTTCCGCAGGAAGTCAACAGAGCAGGAGCTGATGGTGGTGGGCAGG  3108

Query 1293  --------------------------------------------------------------------------  1292
                                                                                      
Sbjct 3109  TGCGCCGGCCCCTCCTTCCCTCCTTCCGAAGTGCCCTCTCCCCTCTGCCCTGCCCTGGGTTACCCTGAACAGAG  3182

Query 1293  -----------------------------------------------------------------------AGT  1295
                                                                                   |||
Sbjct 3183  GTGGCTGGGTTGGACCCTGGACTGGCAGCCAGAGCACCGGGTTCAAGCTCCAGCTCTCCACATGATTTCAAAGT  3256

Query 1296  GTTTGTGGTGTTCCTGGTTGTCATCAGCATCCTCTGGATCCCCATCATCCAAAGCTCCAACAGTGGGCAGCTCT  1369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257  GTTTGTGGTGTTCCTGGTTGTCATCAGCATCCTCTGGATCCCCATCATCCAAAGCTCCAACAGTGGGCAGCTCT  3330

Query 1370  TCGACTACATCCAGGCTGTCACCAGTTACCTGGCCCCACCCATCACCGCTCTCTTCCTGCTGGCCATCTTCTGC  1443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331  TCGACTACATCCAGGCTGTCACCAGTTACCTGGCCCCACCCATCACCGCTCTCTTCCTGCTGGCCATCTTCTGC  3404

Query 1444  AAGAGGGTCACAGAGCCCGGAGCTTTCTGGGGCCTCGTGTTTGGCCTGGGAGTGGGGCTTCTGCGTATGATCCT  1517
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405  AAGAGGGTCACAGAGCCCGGAGCTTTCTGGGGCCTCGTGTTTGGCCTGGGAGTGGGGCTTCTGCGTATGATCCT  3478

Query 1518  GGAGTTCTCATACCCAGCGCCAGCCTGTGGGGAGGTGGACCGGAGGCCAGCAGTGCTGAAGGACTTCCACTACC  1591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479  GGAGTTCTCATACCCAGCGCCAGCCTGTGGGGAGGTGGACCGGAGGCCAGCAGTGCTGAAGGACTTCCACTACC  3552

Query 1592  TGTACTTTGCAATCCTCCTCTGCGGGCTCACTGCCATCGTCATTGTCATTGTCAGCCTCTGTACAACTCCCATC  1665
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553  TGTACTTTGCAATCCTCCTCTGCGGGCTCACTGCCATCGTCATTGTCATTGTCAGCCTCTGTACAACTCCCATC  3626

Query 1666  CCTGAGGAACAGCTCACACGCCTCACATGGTGGACTCGGAACTGCCCCCTCTCTGAGCTGGAGAAGGAGGCCCA  1739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627  CCTGAGGAACAGCTCACACGCCTCACATGGTGGACTCGGAACTGCCCCCTCTCTGAGCTGGAGAAGGAGGCCCA  3700

Query 1740  CGAGAGCACACCGGAGATATCCGAGAGGCCAGCCGGGGAGTGCCCTGCAGGAGGTGGAGCGGCAGAGAACTCGA  1813
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701  CGAGAGCACACCGGAGATATCCGAGAGGCCAGCCGGGGAGTGCCCTGCAGGAGGTGGAGCGGCAGAGAACTCGA  3774

Query 1814  GCCTGGGCCAGGAGCAGCCTGAAGCCCCAAGCAGGTCCTGGGGAAAGTTGCTCTGGAGCTGGTTCTGTGGGCTC  1887
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775  GCCTGGGCCAGGAGCAGCCTGAAGCCCCAAGCAGGTCCTGGGGAAAGTTGCTCTGGAGCTGGTTCTGTGGGCTC  3848

Query 1888  TCTGGAACACCGGAGCAGGCCCTGAGCCCAGCAGAGAAGGCTGCGCTAGAACAGAAGCTGACAAGCATTGAGGA  1961
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849  TCTGGAACACCGGAGCAGGCCCTGAGCCCAGCAGAGAAGGCTGCGCTAGAACAGAAGCTGACAAGCATTGAGGA  3922

Query 1962  GGAGCCACTCTGGAGACATGTCTGCAACATCAATGCTGTCCTTTTGCTGGCCATCAACATCTTCCTCTGGGGCT  2035
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3923  GGAGCCACTCTGGAGACATGTCTGCAACATCAATGCTGTCCTTTTGCTGGCCATCAACATCTTCCTCTGGGGCT  3996

Query 2036  ATTTTGCG-------------------------------------------------------  2043
            ||||||||                                                       
Sbjct 3997  ATTTTGCGTGATTCCACAGACCTGGCTTCAGTGTAGACAGATTAAACAAAGCCCAAGCCTGTC  4059