Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09805
Subject:
XR_001755170.2
Aligned Length:
2446
Identities:
861
Gaps:
1485

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGTGCAGTGGCAGGAACTTGGCTCACTGCAACCTCCGCTTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGAGTAGCTGGGATTACAGGCGCACGTCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACAGGCGTGAGCCACCGTGCCCGGCCGGGAGGTCACTTTAAGGAGGGCTGTCCAACTGCAAGGAGCCGCAAGCA  296

Query    1  ------------------------------------------------------------------ATGAAGCC  8
                                                                              |||||.||
Sbjct  297  GGAAGTGAAACCACAGCACTTCAAAAAAAGAGGGAGACTGGGACAAGCGTATCTAAGAGGCTGAACATGAATCC  370

Query    9  TCACTTCAGAAACACAGTGGAGCGAATGTATCGAGACACATTCTCCTACAACTTTTATAATAGACCCATCCTTT  82
            .||..|||||||..|..|||||||.|||||||||||||||||||.|.||||||||.|.||...|||||||||.|
Sbjct  371  ACAGATCAGAAATCCGATGGAGCGGATGTATCGAGACACATTCTACGACAACTTTGAAAACGAACCCATCCTCT  444

Query   83  CTCGTCGGA-ATACCGTCTGGCTGTGCTACGAAGTGAAAACAAA---GGGTCCCTCAAGGCCCCGTTTGGACGC  152
            .|.|||||| .|||..| |||||||||||.||||||||||.|||   |||.|.|||||..|.||.||.||||.|
Sbjct  445  ATGGTCGGAGCTACACT-TGGCTGTGCTATGAAGTGAAAATAAAGAGGGGCCGCTCAAATCTCCTTTGGGACAC  517

Query  153  AAAGATCTTTCGAGGCC------------------------------------AGGTGTATTCCCAGCCTGAGC  190
            |..|.||||||||||||                                    |||||||||.||.|..||||.
Sbjct  518  AGGGGTCTTTCGAGGCCCGGTACTACCCAAACGTCAGTCGAATCACAGGCAGGAGGTGTATTTCCGGTTTGAGA  591

Query  191  ACCACGCAGAAATGTGCTTCCTCTCTTGGTTCTGTGGCAACCAGCTGCCTGCTTACAAGTGTTTCCAGATCACC  264
            ||||||||||||||||||||.|.|||||||||||||||||||..|||||||||.|||.|.|.||||||||||||
Sbjct  592  ACCACGCAGAAATGTGCTTCTTATCTTGGTTCTGTGGCAACCGACTGCCTGCTAACAGGCGCTTCCAGATCACC  665

Query  265  TGGTTTGTATCCTGGACCCCCTGCCCGGACTGTGTGGCGAAGCTGGCCGAATTCCTGTCTGAGCACCCCAATGT  338
            |||||||||||.||||.||||||||.|..||||||||.||||.||.||.|||||.||.||||||||||||||||
Sbjct  666  TGGTTTGTATCATGGAACCCCTGCCTGCCCTGTGTGGTGAAGGTGACCAAATTCTTGGCTGAGCACCCCAATGT  739

Query  339  CACCCTGACCATCTCCGCCGCCCGCCTCTACTACTACTGGGAAAGAGATTACCGAAGGGCGCTCTGCAGGCTGA  412
            |||||||||||||||.|||||||||||||||||||||.||||.|||||||..||..|||.||||..|||||||.
Sbjct  740  CACCCTGACCATCTCTGCCGCCCGCCTCTACTACTACCGGGATAGAGATTGGCGGTGGGTGCTCCTCAGGCTGC  813

Query  413  GTCAGGCAGGGGCCCGTGTGAAGATTATGGACGATGAAGAATTTGCATACTGCTGGGAAAACTTTGTGTACAGT  486
            .|.||||||||||||||||||||||.||||||.|||||||.||||||||||||||||||||||||||||.||.|
Sbjct  814  ATAAGGCAGGGGCCCGTGTGAAGATCATGGACTATGAAGACTTTGCATACTGCTGGGAAAACTTTGTGTGCAAT  887

Query  487  GAAGGTCAGCCATTCATGCCTTGGTACAAATTCGATGACAATTATGCATTCCTGCACCGCACGCTAAAGGAGAT  560
            |||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct  888  GAAGGTCAGCCATTCATGCCTTGGTACAAATTCGATGACAATTATGCATCCCTGCACCGCACGCTAAAGGAGAT  961

Query  561  TCTCAGAAACCCGATGGAGGCAATGTATCCACACATATTCTACTTCCACTTTAAAAACCTACGCAAAGCCTATG  634
            |||                                                                       
Sbjct  962  TCT-----------------------------------------------------------------------  964

Query  635  GTCGGAACGAAAGCTGGCTGTGCTTCACCATGGAAGTTGTAAAGCACCACTCACCTATCTCCTGGAAGAGGGGC  708
                                                                                      
Sbjct  965  --------------------------------------------------------------------------  964

Query  709  GTCTTCCGAAACCAGGTGGATCCTGAGACCCATTGTCATGCAGAAAGGTGCTTCCTCTCTTGGTTCTGTGACGA  782
                        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  965  ------------CAGGTGGATCCTGAGACCCATTGTCATGCAGAAAGGTGCTTCCTCTCTTGGTTCTGTGACGA  1026

Query  783  CATACTGTCTCCTAACACAAACTACGAGGTCACCTGGTACACATCTTGGAGCCCTTGCCCAGAGTGTGCAGGGG  856
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027  CATACTGTCTCCTAACACAAACTACGAGGTCACCTGGTACACATCTTGGAGCCCTTGCCCAGAGTGTGCAGGGG  1100

Query  857  AGGTGGCCGAGTTCCTGGCCAGGCACAGCAACGTGAATCTCACCATCTTCACCGCCCGCCTCTACTACTTCTGG  930
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct 1101  AGGTGGCCGAGTTCCTGGCCAGGCACAGCAACGTGAATCTCACCATCTTCACCGCCCGCCTCTGCTACTTCTGG  1174

Query  931  GATACAGATTACCAGGAGGGGCTCCGCAGCCTGAGTCAGGAAGGGGCCTCCGTGGAGATCATGGGCTACAAAGA  1004
            ||||||||||||||||||||||||.|||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct 1175  GATACAGATTACCAGGAGGGGCTCTGCAGCCTGAGTCAGGAAGGGGCCTCCGTGAAGATCATGGGCTACAAAGA  1248

Query 1005  TTTTAAATATTGTTGGGAAAACTTTGTGTACAATGATGATGAGCCATTCAAGCCTTGGAAAGGACTAAAATACA  1078
            ||||..||.|||||||.|||||||||||||||.|||||||||||||||||||||||||||.||||||.||..||
Sbjct 1249  TTTTGTATCTTGTTGGAAAAACTTTGTGTACAGTGATGATGAGCCATTCAAGCCTTGGAAGGGACTACAAACCA  1322

Query 1079  ACTTTCTATTCCTGGACAGCAAGCTGCAGGAGATTCTCGAG---------------------------------  1119
            ||||||.|.|.|||.|.||.|.|||.|.||||||||||.||                                 
Sbjct 1323  ACTTTCGACTTCTGAAAAGAAGGCTACGGGAGATTCTCCAGTGAGGGGTCTCCCTGGGCCTCATGGTCTGTCTC  1396

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 1397  TTCTAGCCTCCTGCTCATGCTGCACGGGCCTCCCCTCCATCCTGCACCAGCTGTGCTTTTGCCTGGTCATCCTG  1470

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 1471  AGCCCCTCCTGGCCTCAGGGCCATTCCATAGTGCCCCCCTGCCTCACCACCTCCTCCCCGCTCTCCCAGGCTCT  1544

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 1545  TCTTGTAGAGGCTCTCCATCCACCTCCCCAGTCCTGTTCCCCCAGCCTGGGTGCCCCTAACTTGACTCTTCCCA  1618

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 1619  TCTCCCCAGCATAACCAAATCTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTTTCACTCTGTCGCCCAGACTA  1692

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 1693  GAGTGCAATGGCTGGATCTCAGCTCACTGCAAACTCTGCTTACTGGGTTCAAGTGATTCTCCTGTCTCAGCTTC  1766

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 1767  TGAGTAGCTGGGATTACAGATGCCTGCCACCACGCCCAGCTAATTTTTTTTTTTTTTTTTTTTTTTTTTTGTAT  1840

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 1841  TTTTAGTAGTGACTGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCTGCCCATC  1914

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 1915  TCTGTCTCCCAAAGTGCTGGGATTACGGGCGTGAGCCACCCGGCTCGGCCGCACAACCAAATCTTATTAAACTC  1988

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 1989  AATCTAGTCTGGCCCTGGTGACTCACGCCTTTCGGAGGCAGAGGTGGGAGAATCGCTTGAGCCCAGAAGTTTGA  2062

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 2063  GACCAGCCTGGGCCACACGACAAAGCCCCATTTCTACAAAAAAAAATACCAAAAAAAAGCCAGATGTGGTGGCA  2136

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 2137  TGCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCGGGGAGGTGGAGGCTGGAGT  2210

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 2211  AAACTGAGATCGCGCCACAGAACTCCAGTTTGAGCAACAGATCAAGACCCTGCCTGAAAATAAATCAATAAATA  2284

Query 1120  ----  1119
                
Sbjct 2285  CACT  2288

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