Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_09915
• Subject: XR_001737094.2
• Aligned Length: 1349
• Identities: 821
• Gaps: 473

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTCCCCTTATTTGGATCTGCGGGAATGTGGGCTGGAGAGGTCCTGCCGTGGTACCAGCCTCCAGCCTGCCCCCA  74

Query    1  -----------------------------------------------------------ATGGCCTGCATCCTG  15
                                                                       |||||||||||||||
Sbjct   75  GGACTGCCCCTGACCCAGGCGCGCCCGCTGCTCGGTGGCAGGAGGGCCGGCGGAGCGCCATGGCCTGCATCCTG  148

Query   16  AAGAGAAAGTCTGTGATTGCTGTGAGCTTCATAGCAGCGTTCCTTTTCCTGCTGGTTGTGCGTCTTGTAAATGA  89
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AAGAGAAAGTCTGTGATTGCTGTGAGCTTCATAGCAGCGTTCCTTTTCCTGCTGGTTGTGCGTCTTGTAAATGA  222

Query   90  AGTGAATTTCCCATTGCTACTAAACTGCTTTGGACAACCTGGTACAAAGTGGATACCATTCTCCTACACATACA  163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AGTGAATTTCCCATTGCTACTAAACTGCTTTGGACAACCTGGTACAAAGTGGATACCATTCTCCTACACATACA  296

Query  164  GGCGGCCCCTTCGAACTCACTATGGATACATAAATGTGAAGACACAAGAGCCTTTGCAACTGGACTGTGACCTT  237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GGCGGCCCCTTCGAACTCACTATGGATACATAAATGTGAAGACACAAGAGCCTTTGCAACTGGACTGTGACCTT  370

Query  238  TGTGCCATAGTGTCAAACTCAGGTCAGATGGTTGGCCAGAAGGTGGGAAATGAGATAGATCGATCCTCCTGCAT  311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TGTGCCATAGTGTCAAACTCAGGTCAGATGGTTGGCCAGAAGGTGGGAAATGAGATAGATCGATCCTCCTGCAT  444

Query  312  TTGGAGAATGAACAATGCCCCCACCAAAGGTTATGAAGAAGATGTCGGCCGCATGACCATGATTCGAGTTGTGT  385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TTGGAGAATGAACAATGCCCCCACCAAAGGTTATGAAGAAGATGTCGGCCGCATGACCATGATTCGAGTTGTGT  518

Query  386  CCCATACCAGCGTTCCTCTTTTGCTAAAAAACCCTGATTATTTTTTCAAGGAAGCGAATACTACTATTTATGTT  459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CCCATACCAGCGTTCCTCTTTTGCTAAAAAACCCTGATTATTTTTTCAAGGAAGCGAATACTACTATTTATGTT  592

Query  460  ATTTGGGGACCTTTCCGCAATATGAGGAAAGATGGCAATGGCATCGTTTACAACATGTTGAAAAAGACAGTTGG  533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ATTTGGGGACCTTTCCGCAATATGAGGAAAGATGGCAATGGCATCGTTTACAACATGTTGAAAAAGACAGTTGG  666

Query  534  TATCTATCCGAATGCCCAAATATACGTGACCACAGAGAAGCGCATGAGTTACTGTGATGGAGTTTTTAAGAAGG  607
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TATCTATCCGAATGCCCAAATATACGTGACCACAGAGAAGCGCATGAGTTACTGTGATGGAGTTTTTAAGAAGG  740

Query  608  AAACTGGGAAGGACAGAGT--CCAGTCTG-GCTCAT--ATC--TCAGCACAGGGTGGTTTACCTTCATTCTGGC  674
            |||||||||||||||||||  |||..|.| |.|.||  |||  .|||||           |||..||       
Sbjct  741  AAACTGGGAAGGACAGAGTGACCATGCAGTGTTGATTGATCGAACAGCA-----------ACCACCA-------  796

Query  675  CATGGACGCCTGTTATGGCATTCACGTCTACGGGATG------ATAAATG------------------------  718
            |||    .|.|||..||.|  .|||..|.|..|||.|      |||||.|                        
Sbjct  797  CAT----ACATGTCCTGCC--CCACCACAAAAGGAAGGAAGGAATAAAAGAAAGAAAGAAAGAAACAAACAAAC  864

Query  719  --------ACACCTACTGCAAGACAGAA----------------GGGT--ATAGA-------------------  747
                    |.|.||| .||||||||.||                .|||  |.|||                   
Sbjct  865  AAACAAACAAAACTA-AGCAAGACAAAACAAATACCCATGTCAGTGGTTCAAAGATTAAGATTGTGGCTTTGTG  937

Query  748  -AAAGTCCCCTACC-------------------ATTAT-----TATG---------------AACAAGGAAGAG  781
             |||||.|..|.||                   |||||     ||||               ||.|||||||.|
Sbjct  938  TAAAGTTCTTTCCCTTTGTAGACTTGCTGCATAATTATTCAGGTATGATGGTTACAGTTTTTAAAAAGGAAGGG  1011

Query  782  A---TGAG---TGTG--ATG--AATATTT---------------------------------------------  800
            |   ||.|   ||||  |||  |||||||                                             
Sbjct 1012  AAATTGTGGTATGTGGTATGTAAATATTTTTAAATGTTGTCTCTCTGTTTTGATCAGTTTTTGTTTTATTCAAT  1085

Query  801  ---TCTTCATGAACAT---------GC-------------CCCAT----------------------------A  821
               ||||.||.|| ||         ||             |||||                            |
Sbjct 1086  TTGTCTTTATTAA-ATCTTATCAAAGCAAAACTTGTTCTTCCCATTTCTCTGTTTTGATTACAGGACTACTGAA  1158

Query  822  TGGGGGTCATAGGTTTATCACTGA-------AAAGAAAGTGTTTGCTA-AATGGGCCA----AGA---------  874
            |||     |.||.|||    ||||       ||.|.||.|||||..|| ||..|||||    |||         
Sbjct 1159  TGG-----AGAGCTTT----CTGATTTCTCCAAGGGAATTGTTTTGTAGAAAAGGCCATGCTAGATTTCCCTTG  1223

Query  875  ----------------------------------------------AGCACAGGATAATATTTACACATCCAAA  902
                                                          ||||||||.|  ..||||| |.||| ..
Sbjct 1224  CCACTGCCTCTTTCTGCTTGGAAGAGTCCAGTCTGGCTCATATCTCAGCACAGGGT--GGTTTAC-CTTCC-TT  1293

Query  903  CTGGACATTGTCT----  915
            ||||.|||.|.|.    
Sbjct 1294  CTGGCCATGGACGCCTG  1310