Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_09944
- Subject:
- NR_121572.1
- Aligned Length:
- 2422
- Identities:
- 1081
- Gaps:
- 1232
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGAGAGAAAAAGGATAAATTTCCAGAACTATGGTCCCTGTGCTCCAGTTCGTCAGGCGGGCGCGGCGGAGAC 74
Query 1 --------------------------ATGCGGCGCTACCTGCGCGTCGTGGTGCTGTGTGTGGCCTGCGGCTTC 48
||||||||||||| ||||||.||||..||||||.|||||||.||||||
Sbjct 75 GGAGACCGAGGAACGCCGCTGGGGCCATGCGGCGCTACC-GCGCGTGGTGGCTCTGTGTCTGGCCTGAGGCTTC 147
Query 49 TGCTCGCTCCTTTACGCTTTCAGCCAGCTCGCCGTGTCCCTGGAAGAAGGAACGGGCGGCGGTGGCGGGAAGCC 122
|||||||||||||||||.||||||||||||.|||||||||.|||.||||||.|||||.|.||||||||||||||
Sbjct 148 TGCTCGCTCCTTTACGCCTTCAGCCAGCTCCCCGTGTCCCCGGAGGAAGGAGCGGGCCGTGGTGGCGGGAAGCC 221
Query 123 GCAGGCCGCGGTGGCTTCCTGGCTCGCGGGCGGCGGACGCGGCGCCGTGAGAGGCGCCGGCGTCGCGGGCCCCG 196
|||||||||.||||||||||||||.|||||.||||||.||||.||.|||||||||||..||..|||..|.||||
Sbjct 222 GCAGGCCGCAGTGGCTTCCTGGCTGGCGGGAGGCGGATGCGGTGCGGTGAGAGGCGCGAGCAGCGCTTGTCCCG 295
Query 197 CAGCGCATCCCGGCGTGTCGGACAGGTGTAAAGATTTCTCTCTGTGTTACTGGAATCCCTATTGGATGCTGCCC 270
|.||.||||||.||..||.||||||||||
Sbjct 296 CTGCTCATCCCCGCAGGTGGGACAGGTGT--------------------------------------------- 324
Query 271 TCTGATGTTTGTGGAATGAACTGCTTTTGGGAAGCGGCTTTTAGGTACAGTCTGAAAATACAGCCTGTTGAGAA 344
||||||||||||||||||||||||||
Sbjct 325 ------------------------------------------------AGTCTGAAAATACAGCCTGTTGAGAA 350
Query 345 AATGCATCTAGCTGTAGTTGCCTGTGGTGAAAGACTGGAAGAAACTATGACCATGTTGAAGTCAGCTATCATTT 418
||||.||||| ||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 351 AATGTATCTA---------------GGTGAAAGACTGGAAGAAACTATGACCATGTTGAAGTCAGCTATTATTT 409
Query 419 TCAGCATCAAACCTCTTCAATTCCATATTTTTGCTGAAGATCAGCTACATCATAGCTTTAAAGGCAGACTTGAC 492
||||.||||||||||||||||||||.|||||||||||||||||.||||||||||||||||||||.||.||||||
Sbjct 410 TCAGGATCAAACCTCTTCAATTCCAGATTTTTGCTGAAGATCAACTACATCATAGCTTTAAAGGAAGGCTTGAC 483
Query 493 AACTGGTCATTTCTACAAACATTTAATTATACGTTATACCCCATAACCTTTCCAAGTGAGAATGCAGCAGAGTG 566
|..|||||||||||||||.||||||||||||..|||||.||||||||||||||||||||||||||||||||||
Sbjct 484 -AGGGGTCATTTCTACAAATATTTAATTATACAATATACTCCATAACCTTTCCAAGTGAGAATGCAGCAGAGTG 556
Query 567 GAAAAAACTCTTTAAACCATGTGCTTCGCAGAGATTGTTCTTGCCGTTAATCCTGAAAGAAGTTAACTCACTAT 640
| |||||||||||||||||||||.||.|||||||||||.||||||||||.||||||||||||||.||||.|
Sbjct 557 G-AAAAACTCTTTAAACCATGTGGTTTGCAGAGATTGTCCTTGCCGTTATTCCTGAAAGAAGTTGACTCTC--- 626
Query 641 TGTATGTCGACACTGATATCCTTTTTTTACGACCAGTTGATGATATTTGGTCTTTACTAAAGAAATTTAATTCC 714
|||||||||.|||||||..|.||||||.||||.||||||||||||||||||||||||||||||||
Sbjct 627 ---------ACACTGATAGCCTTTTTAAAAGACCAGCTGATAATATTTGGTCTTTACTAAAGAAATTTAATTCC 691
Query 715 ACACAAATTGCTGCAATGGCACCAGAACATGAGGAACCTCGAATAGGATGGTATAATCGCTTTGCTAGGCATCC 788
||||||||| ||||||||||.||||||||..|||||..||.||||||||||||||.||||||||||||||||||
Sbjct 692 ACACAAATT-CTGCAATGGCCCCAGAACACAAGGAATGTCAAATAGGATGGTATAGTCGCTTTGCTAGGCATCC 764
Query 789 ATATTATGGAAAAACTGGAGTAAACTCTGGAGTTATGTTGATGAACATGACTCGAATGAGAAGGAAGTATTTCA 862
|||.|.|||||||.|||||||||||||||||||||||||||..|||||||||.|||||||||||||||||||||
Sbjct 765 ATAGTGTGGAAAAGCTGGAGTAAACTCTGGAGTTATGTTGACAAACATGACTTGAATGAGAAGGAAGTATTTCA 838
Query 863 AGAATGATATGACAACTGTACGACTACAATGGGGAGATATACTTATGCCATTGCTTAAAAAATACAAACTAAAC 936
|||||.|||||||||||||..||||||||||.|||||||||||||||.|||.||||||||.||||||..|||||
Sbjct 839 AGAATAATATGACAACTGTGTGACTACAATGAGGAGATATACTTATGACATGGCTTAAAATATACAAGTTAAAC 912
Query 937 ATCACATGGGGTGATCAAGATCTATTGAATATCGTGTTTTTTCATAATCCAGAAAGCCTTTTTGTTTTTCCGTG 1010
||.|||| |||.|||||||||||.|||.|||||.|||||||||||||||||||||||||||||||.||||||||
Sbjct 913 ATTACAT-GGGCGATCAAGATCTGTTGGATATCCTGTTTTTTCATAATCCAGAAAGCCTTTTTGTCTTTCCGTG 985
Query 1011 TCAATGGAATTATCGACCAGATCATTGTATATATGGAAGCAATTGCCAAGAAGCAGAAGAAGGAGGAATCTTTA 1084
|||||||||.|.|||.||||||||.|||.||||||||||||.|||||||||||||||||| |||||||||||
Sbjct 986 TCAATGGAAGTGTCGTCCAGATCACTGTCTATATGGAAGCAGTTGCCAAGAAGCAGAAGA---AGGAATCTTTA 1056
Query 1085 TTCTTCATGGGAACAGAGGTGTTTACCATGACGATAAGCAACCAGCATTTAGAGCTGTTTATGAAGCACTGAGA 1158
||.||||.|||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 TTTTTCACGGGAACAGAGGTGTTTACCATGATGATAAGCAACCAGCATTTAGAGCTGTTTATGAAGCACTGAGA 1130
Query 1159 AATTGTTCTTTTGAAGATGACAACATCCGTTCCTTATTAAAACCTTTAGAACTGGAACTACAAAAAACAGTGCA 1232
|||||||||||| ||||||||||..|.|.|||.|||.||||||||||||||.|||||||||||||||.||||||
Sbjct 1131 AATTGTTCTTTT-AAGATGACAATGTTCATTCATTAATAAAACCTTTAGAATTGGAACTACAAAAAATAGTGCA 1203
Query 1233 TACATACTGTGGAAAAATTTACAAAATATTTATCAAACAACTAGCAAAAAGTGTAAGAGATCGTTATGCCAGAT 1306
|||||||.||||||||||||||.|||||||||||||||||.||||||||| ..||||||||||.||||.|||||
Sbjct 1204 TACATACCGTGGAAAAATTTACTAAATATTTATCAAACAATTAGCAAAAA-CATAAGAGATCGCTATGTCAGAT 1276
Query 1307 CACCAAAGGAAAAG------------------------------------------------------------ 1320
||||||||||||.|
Sbjct 1277 CACCAAAGGAAAGGTGATTCTTGTTGCCTGCTACATCAAATGGATGAAAAGAACAAAGCATTGGAGGATAAGTA 1350
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1351 TGAAGGAACTGTCTTGGGTGAAGCATTAAGGCAGGAATTATTCATCTACAGAATTTTTTTTTTTCCTGAAGAGG 1424
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1425 TTAAATGAGCAGTATTTTCAGGTAATGAAGAATAAGTTAAAATCTTGGGCTTCAACAAAGAAAAATTTTTGGCC 1498
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1499 TCTGATGTTGTGTAATGTTACTTACTATCATTCCAGTATTGATGAAAATATTATTGAATGGTTTTAGCCTGCAA 1572
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1573 ACTTCTGTTGACTCATACTCTCAAGAGTGGTGGGGCTGTGAAAATGAAGAAAATGTACCTCAAACACAGTGCAA 1646
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1647 ACACTCAGATGAGTCAGCTCTCTTCAGGATGCGCATTTATTTCTCCCTTTGGAGGAGGCCTCAGTCCAGCTCAG 1720
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1721 CCAAGGACTGAAAGGCACATCTGGCTAATTCAAGACTGAGAAAGGCTTTTACATCAAATATTGATAATGATAAT 1794
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1795 AATAATGAACACATGTTGAGCACTTACCATGTCTCAAGCACTGCTCTAGAGCTTCCCATGAAAGAACCCCTCTA 1868
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1869 ATCTTCAGAACAACCCTGTGAGAACTGGCTGAAGTTTACTTTTTGGTTCTCCAGAGACCTAGCTTCTTCCAATG 1942
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1943 TGGTCTATTTAATCTCCTGTCATGTGGGAAATTATATTCAAAATCTCCATGATCCTCTGTCCATAGTAAGTTAT 2016
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 2017 GCATGTAGTGAGAAGTACATGCCACAAGGTCTTGAGATTATATCTGCAATGTGTTGCTGCTGGCTGTTGATCAA 2090
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 2091 GATAGGCTGGGAGAAGATCATTTTCAGGTGTGAAAAACTGTCACCTTTATCAAATAATTCTTCTTGCATATTTC 2164
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 2165 CCAAGACGTTGTAGCCTGTCTAAACTTGGGAGGTTAATTTTGTAGCATTCATTATGACCGAAAATGTAGTTCAC 2238
Query 1321 ------------------------------------------------------ 1320
Sbjct 2239 ACAATCATGATGCTCTCTTTATTAGGTGTTACTGTTAAACAATATTAAAATACA 2292
