Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10083
- Subject:
- NR_045791.1
- Aligned Length:
- 5128
- Identities:
- 812
- Gaps:
- 4313
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTCAGCTTCCCGAGTAGCTGGGACTGCAGGCGCCAGCAACCTCGCCCGGCTAATTTTTTGTATTTTTGGTAGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACGGGGTTTCACCGTGTTAGCCAGGAGGGTCTCGATCTCCTGACCTCGTGATCTGCTCGCCTCGGCCTCCCAAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTGCTGGGATTACAGGCGTGAGCCACCACGCCCGGCCAGGTCCCGAAACTTAAGCTTCATTTGTTTCACTGCAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ATCTGCTTCTGCCTACAAGCCTGGTCTCATTTTCCTCTACCTAAGGATCTTCCTCCATGCAATTTCGGCCTAGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGGCCCTTCCCGCCCCTTTTCGCCTAGCTAACTCTTTCGGTACTCAACCACCAACTCCTAATCCTCCCTGGTCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCCAAGTGGGCTAGGGGCTTCTTGGGAGTCCCTCGCACTGCTCTAAGCATCCAGGCAGAGTCATTATTCCGGGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCCAGGTTGCTCTTTTTCCAGCAGCCTTCAGGGGACTCCTGGCTGGGCGGAGTCTGTAGAGGCGCGCGGAGTCC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGGGAGAGCGTCAGATGTATTTCCTTTCCCTTTTTTCGCTCGTGTCCCGCCGGGTGGCGCTCACCACCTCCCCG 592
Query 1 ----------------------------------------------------------ATGGCAGCGCTGACAC 16
|||||.||||||||||
Sbjct 593 GAACACGCGAGTCTCCTGTCGCGGTTCCGGTCGGAATTACCCCGTGGAGCACGCCGATATGGCTGCGCTGACAC 666
Query 17 TGAGGGGTGTCCGGGAGCTGCTGAAGCGTGTGGACCTCGCGACGGTCCCGCGGAGACATCGATATAAGAAGAAA 90
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGAGGGGTGTCCGGGAGCTGCTGAAGCGTGTGGACCTCGCGACGGTCCCGCGGAGACATCGATATAAGAAGAAA 740
Query 91 TGGGCTGCCACAGAGCCCAAATTCCCTGCTGTTCGACTGGCTTTGCAGAATTTTGACATGGCTTACAGTGTGCA 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 741 TGGGCTGCCACAGAGCCCAAATTCCCTGCTGTTCGACTGGCTTTGCAGAATTTTGACATGACTTACAGTGTGCA 814
Query 165 GTTTGGAGATCTTTGGCCATCAATCCGTGTCAGTCTCCTCTCAGAGCAGAAGTATGGTGCACTGGTCAATAACT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GTTTGGAGATCTTTGGCCATCAATCCGTGTCAGTCTCCTCTCAGAGCAGAAGTATGGTGCACTGGTCAATAACT 888
Query 239 TTGCTGCCTGGGATCATGTAAGTGCTAAGCTGGAGCAGCTGAGTGCCAAGGATTTTGTGAATGAAGCCATCTCC 312
|||||||||||||||||
Sbjct 889 TTGCTGCCTGGGATCAT--------------------------------------------------------- 905
Query 313 CACTGGGAACTGCAGTCTGAGGGTGGCCAATCTGCAGCCCCATCCCCTGCCTCCTGGGCCTGCAGTCCGAACCT 386
Sbjct 906 -------------------------------------------------------------------------- 905
Query 387 TCGATGCTTCACTTTTGACAGAGGGGATATCAGTCGCTTCCCTCCTGCCAGACCTGGCAGCCTGGGTGTCATGG 460
Sbjct 906 -------------------------------------------------------------------------- 905
Query 461 AGTACTACCTGATGGATGCTGCCTCCTTGCTGCCTGTTCTGGCCCTCGGCCTGCAGCCTGGGGACATCGTGCTT 534
Sbjct 906 -------------------------------------------------------------------------- 905
Query 535 GACCTATGTGCAGCTCCTGGGGGAAAGACACTAGCGTTGCTTCAGACTGGCTGTTGCCGCAATCTTGCTGCCAA 608
||||||||||||||||
Sbjct 906 ----------------------------------------------------------GCAATCTTGCTGCCAA 921
Query 609 TGATCTCTCCCCGTCCCGAATAGCCAGACTACAGAAGATCCTTCACAGCTATGTGCCTGAAGAGATCAGGGATG 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 TGATCTCTCCCCGTCCCGAATAGCCAGACTACAGAAGATCCTTCACAGCTATGTGCCTGAAGAGATCAGGGATG 995
Query 683 GAAATCAAGTTCGAGTTACCTCATGGGATGGCAGGAAATGGGGAGAACTGGAGGGGGACACCTATGACCGGGTG 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 GAAATCAAGTTCGAGTTACCTCATGGGATGGCAGGAAATGGGGAGAACTGGAGGGGGACACCTATGACCGGGTG 1069
Query 757 CTGGTGGATGTGCCCTGTACCACAGACCGCCACTCCCTTCATGAGGAGGAGAACAACATCTTTAAGCGGTCAAG 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 CTGGTGGATGTGCCCTGTACCACAGACCGCCACTCCCTTCATGAGGAGGAGAACAACATCTTTAAGCGGTCAAG 1143
Query 831 GAAGAAGGAGCGACAGATATTGCCTGTGCTGCAAGTGCAGCTTCTTGCGGCTGGACTCCTTGCCACCAAACCAG 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 GAAGAAGGAGCGACAGATATTGCCTGTGCTGCAAGTGCAGCTTCTTGCGGCTGGACTCCTTGCCACCAAACCAG 1217
Query 905 GAGGCCATGTTGTCTATTCTACCTGCTCACTCTCACACTTACAGAACGAGTATGTGGTGCAAGGTGCCATTGAG 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 GAGGCCATGTTGTCTATTCTACCTGCTCACTCTCACACTTACAGAACGAGTATGTGGTGCAAGGTGCCATTGAG 1291
Query 979 CTCCTGGCCAATCAATACAGCATCCAGGTACGGGTGGAAGATCTGACTCACTTCCGAAGGGTTTTCATGGACAC 1052
|||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 CTCCTGGCCAATCAATACAGCATCCAGGTACAGGTGGAAGATCTGACTCACTTCCGAAGGGTTTTCATGGACAC 1365
Query 1053 ATTTTGTTTCTTCTCATCCTGTCAGGTTGGGGAGCTGGTAATACCAAACCTCATGGCCAATTTTGGCCCCATGT 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 ATTTTGTTTCTTCTCATCCTGTCAGGTTGGGGAGCTGGTAATACCAAACCTCATGGCCAATTTTGGCCCCATGT 1439
Query 1127 ACTTCTGCAAAATGCGTAGGCTGACA------------------------------------------------ 1152
||||||||||||||||||||||||||
Sbjct 1440 ACTTCTGCAAAATGCGTAGGCTGACATAGTATCACCCAATCCCTGAAGCAAGAATACAAAGGGTATACTCTGTT 1513
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1514 GGATGCACCAGAAACTGGAAACTGGGACCAGTGGCAGAGATGCACTCTCGGTCCTGTCTCCATCCTGTTCGTGT 1587
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1588 CTTTCTGCAGTTTTCGGCAATAAGAAGTAGAAGATTTGCTGTCCTGCTGTCCAATTGTGGAGCATCAGCAGGTT 1661
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1662 TCCAACTCACTCATTAACCCCTACCCCATCTCCAGGCCTGTACTAAAGTTTGCTGCCCGCTTAGGGGCTTAGAA 1735
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1736 GGAGAAGCCAGTGAGCAGGCTCACACTAAGTTGTAAACATAGGAGAAGCATTTGGCCAATAAAGTTGTTGAAAC 1809
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1810 TCTATAGACCTGGGGCTGCAGTTGGGGACTTCATGTCAGTGCAAATGCCATTAGTTCCATTTGTACCAGCCAGT 1883
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1884 TACTGAGCCCCTGTCACCCTTGAAGTGAGTTCCACCTGACCAGTCTTGAGCAGCCAACAGGCTCAATTAAGCCC 1957
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1958 GCCTGGTTTTTCCATATGGCTCATGATCTAATTTAAGGAACAAGTAACTAAAAATGTTAAGCCAGTGCAAAATA 2031
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2032 ATCTGCTTACCTACTCACATTGGAAAAACCCTCTGAGCTGAATAATTCTGGCCATTCCTGCTGTCAACAATACT 2105
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2106 GCTGCCCAAATGTGGCTTAGGAGGCTGCTTCTGCCACAAAACCGTCATACTCTTGTGCGTGCCTTGTTCTTTGT 2179
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2180 TCATTCATCTAGCAGGTATTCCCAGACCTCGTGTATGACAGGTAGCTAGGGAGCTCTTGGAGATGTAGCAGTTG 2253
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2254 GGATTGTGGGAGATTACTGGGCTTCCTCATCCTTTAGAATGGTAACTCTCCTTTTGCTTTCTGAACACCTAGGA 2327
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2328 ATTTCCTGATGTTTTGTTTTGTTGGATTCCAGACTTTTTGTTGTTTCTAGTCTGCAGCTGAGCTCTGGTGCCTG 2401
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2402 TTCTTTGGCCCACCCCCTAATCCCTAACTCTTCCCTCAGCATCACAGGGCTTCACTGCACACACTGTGTTCAGG 2475
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2476 GCAAGATTTCATCATTTACTGACTGCATACTCGATATGTTGTTTTTGTAACTTTAGCCAAAAGAAAGTAACCTT 2549
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2550 TAGTGGCAGGGATATAAAAAATTGCTCAGGGTCACTTGCAGATATTTTATTTTTAAACTTTTTTTTTTTTTCCT 2623
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2624 GGAAAACATCCTGTGCAGAAAAGGGTATATAATTTTAGAATACCTGAAGGCTTCTTGGCTTTTCCACTTTCCTT 2697
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2698 ATTCCTCCTCTTCCTGCCACTCTTTTTGTCCCTTCTGTCTTTCCTGCTCATCCTTATTTGGGTATTAGAGGTGT 2771
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2772 CAGTTGAGGAGGGACTTTAGCTGAGGTTAAGCCTTCTTTTGGGATTTGCATTGTAATTGAGGGCCCTGGAAGAT 2845
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2846 CTCTGAGACTCAAAATCAGGTGAAGCTAGGAAGATGGAGCTTTAAGGAGCATGGCTAGTGCTCTGAGTAGGACC 2919
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2920 GTAACCGCCTCCGTGCGTGGCATATGGTCCCTGCATGCTGTTCACTCTGTATAGTACTTAGTATTCGCTGAGGC 2993
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2994 TAAGAGGCCTCAGGTGCCTGGGCTTCTGCCCTTGGACTCCTGGATATCCAGCCTAGTGCTAATTGAATGCTAAG 3067
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3068 CAGTGGTAATTCAAAATGAGAGGGTCCCCTGCCTCTAGAGTCATCATCTAATTGGGGACAGGCAGACCTAGATA 3141
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3142 AGAAAAGCAGAGAACTACTTTGGAAAACAGTTTATCTGCTGTAATTGAACATTCAGCTACCCTATAACCCAGTT 3215
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3216 AATCCAATACTGGGGATAAATCCTAGAGAAACTCATACATGTACACCAGGAGATGTGTACAAGAATATTCATAG 3289
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3290 CAACCCTATTCACAAAAGCAAAAGCCTAGAAATAACCCAGATGCCCATGAGCAAGAGAGTGGACAAGTAAACTG 3363
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3364 GAATATTCACATAATAGAACATTATACAATTGTCAAATGAACTATAATGATACCTAACCATATGGATGAATCTG 3437
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3438 AGCAATAAAATAATTAAGTGAAAAAAGTTTAATCCCAGAAGAGTAAATGTAGCATGATGCCCTTTCTAAATGAA 3511
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3512 AGGTTTTTTCTTTTCTATGGAGTTATTCTTTACATACAATATAGTTCATAAATTTTAAATATATTGTTTAATAA 3585
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3586 ATTTTGATAATTGTATATAATAGTATAGTCACCATCAAGATGTAGAAAATAGAAAATAGGCTAGGCACAGTGGC 3659
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3660 TCACGCCTGTAATCTCAACACTTTGGGAGGCCAAGGTGGGAAGATCACTTGATCCCAGGAATTCTAGATCAGCT 3733
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3734 TGGACAATGTAGTGAGACCTGGTCTTTACCAAAAAAAAAAAAAAAAAAATTAGCTGGGTGCGCTGGCATGTGCC 3807
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3808 TGTGGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGGATCACTTGAGCACAGGAGTTTGAGGCTGCAGTGAGCAG 3881
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3882 CCTGGGCAAGAGAGTGAGACTCCGTTTTGTGCCACTGCACTCCAGCCAGGGTGACAGAGTGAGACTCTGTCTCA 3955
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3956 AAAAAAAAAAAAAAAAAAAAGGCATTGGGATTTATAATGTGCTGTTTAAAGTCTGAAGCTCGGCCAGGTGCGGT 4029
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4030 GGCTCACGCCTGTAATCCCAAAACTTTGGAAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGGAGTTCAAGA 4103
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4104 CCAGCCTGGCCAACGTGGTGAAACCCCATCTCTATAAAAGTACAAAAGGGCATGATGGCAGGTGCCTGTAATCT 4177
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4178 CAGCTACTCAGTAGGCTGGAGCGGGAGAACTGCTTGAACCTGGGAGGTGGAGGTTTCAGTGAGCCAAGATAGCG 4251
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4252 CCATTGCACTCCAGCGTGGGCGACAGCAAGAGACTTCATTTCGATAAATAAGTAAATAAATAAATAAAGTCTGA 4325
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4326 AGCTCCACTGGTCACTCCTTTTATTGATTATTTGCAGCTGGTCTAACCAGTTACGTATGTCTGGCTTGATTACA 4399
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4400 TGGCCAGAGCAACATAAAAGCCCTGCTGGGAACTTCTGATTTGAGCTCTTCCAAAACCAGGATGGATGCCTCAC 4473
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4474 ATAGATCATGATGATTCAATCCAAAGGCACTTTGCAGTGCAGTCCACATGTGCATAAGGACCATGGGGAGCTTG 4547
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4548 TATTTGGGAATTCTGAGATTCCTGATGTTTACCTACCTAGTCTTTCTCTTGCTGCCCTGTATCCTTTGCCTTTA 4621
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4622 AATAAAAATCTTAAGTGATTATGCTCTGTGAAGCCTGGATAATCCTTTCAAATATTTGGTCTTGGAAAATTTTT 4695
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4696 GCATATATACATGGAATCATACAATATGTAGTCTTTGGTGTTTGACTTCTTTGACTTAGTGTAATGTTTTTGAG 4769
Query 1153 ---------------------- 1152
Sbjct 4770 ATTCAAAAAAAAAAAAAAAAAA 4791
