Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_10114
• Subject: XR_001744759.1
• Aligned Length: 2015
• Identities: 1309
• Gaps: 688

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTCTCTACACAGAATCGGCTGTTGAGTGTGCTCTCAGTGGAGCTTTGGTTTTAGCTGTTCTCTGACAAAGAGCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGTTCTGAGCTGCACATCTCGTCCTCTTTGTTCAGCCTCAGGCTTCAAGCATTGAATCCTAAATATTCTCCAGC  148

Query    1  ----------------------ATGAAGAACCCAGAAGCCCAGCAGGATGTTTCAGTTTCCCAGGGATTTCGCA  52
                                  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TGGGAATCAGACAAGGGCAGAAATGAAGAACCCAGAAGCCCAGCAGGATGTTTCAGTTTCCCAGGGATTTCGCA  222

Query   53  TGTTGTTTTACACGATGAAACCCAGTGAAACTTCATTCCAAACATTAGAAGAGGTGCCTGATTATGTAAAAAAG  126
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TGTTGTTTTACACGATGAAACCCAGTGAAACTTCATTCCAAACATTAGAAGAGGTGCCTGATTATGTAAAAAAG  296

Query  127  GCAACTCCATTTTTCATTTCTTTGATGCTGCTTGAACTTGTTGTCAGCTGGATTCTCAAAGGAAAGCCACCAGG  200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GCAACTCCATTTTTCATTTCTTTGATGCTGCTTGAACTTGTTGTCAGCTGGATTCTCAAAGGAAAGCCACCAGG  370

Query  201  TCGCCTGGATGATGCTTTAACGTCAATCTCAGCTGGTGTTCTGTCTCGACTTCCAAGTCTATTTTTCAGGAGCA  274
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TCGCCTGGATGATGCTTTAACGTCAATCTCAGCTGGTGTTCTGTCTCGACTTCCAAGTCTATTTTTCAGGAGCA  444

Query  275  TTGAACTGACCAGTTATATTTATATCTGGGAGAACTACAGGCTGTTCAATTTGCCTTGGGATTTTCCATGGACT  348
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct  445  TTGAACTGACCAGTTATATTTATATCTGGGAGAACTACAGGCTGTTCAATTTGCCTTGGGATTCTCCATGGACT  518

Query  349  TGGTATTCAGCCTTCTTAGGAGTTGACTTTGGCTACTACTGGTTCCATCGTATGGCTCATGAAGTTAATATTAT  422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TGGTATTCAGCCTTCTTAGGAGTTGACTTTGGCTACTACTGGTTCCATCGTATGGCTCATGAAGTTAATATTAT  592

Query  423  GTGGGCCGGACACCAAACACATCATAGTTCTGAAGACTATAACTTATCCACAGCACTGAGACAGTCTGTCCTCC  496
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GTGGGCCGGACACCAAACACATCATAGTTCTGAAGACTATAACTTATCCACAGCACTGAGACAGTCTGTCCTCC  666

Query  497  AGATATATACTTCCTGGATTTTCTACTCTCCCCTGGCCCTCTTCATACCCCCTTCAGTATATGCTGTTCATCTT  570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AGATATATACTTCCTGGATTTTCTACTCTCCCCTGGCCCTCTTCATACCCCCTTCAGTATATGCTGTTCATCTT  740

Query  571  CAATTCAATCTTCTTTACCAATTTTGGATCCATACAGAGGTCATCAATAACCTTGGTCCTTTGGAACTGATTCT  644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CAATTCAATCTTCTTTACCAATTTTGGATCCATACAGAGGTCATCAATAACCTTGGTCCTTTGGAACTGATTCT  814

Query  645  TAATACTCCTAGCCATCATAGGGTTCATCATGGCAGAAATCGTTATTGCATAGACAAAAATTATGCTGGTGTTC  718
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TAATACTCCTAGCCATCATAGGGTTCATCATGGCAGAAATCGTTATTGCATAGACAAAAATTATGCTGGTGTTC  888

Query  719  TTATTATTTGGGATAAAATTTTTGGGACATTTGAAGCAGAAAATGAAAAAGTTGTATATGGCTTAACACATCCC  792
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TTATTATTTGGGATAAAATTTTTGGGACATTTGAAGCAGAAAATGAAAAAGTTGTATATGGCTTAACACATCCC  962

Query  793  ATTAATACATTTGAACCAATCAAAGTGCAGTTCCATCACTTATTTTCCATATGGACTACATTCTGGGCCACACC  866
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  ATTAATACATTTGAACCAATCAAAGTGCAGTTCCATCACTTATTTTCCATATGGACTACATTCTGGGCCACACC  1036

Query  867  TGGATTCTTCAATAAGTTTTCTGTCATATTTAAGGGACCGGGATGGGGTCCAGGTAAACCAAGACTTGGTCTCA  940
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TGGATTCTTCAATAAGTTTTCTGTCATATTTAAGGGACCGGGATGGGGTCCAGGTAAACCAAGACTTGGTCTCA  1110

Query  941  GTGAAGAAATTCCAGAGGTCACCGGCAAAGAAGTTCCCTTCTCATCATCTTCATCTCAGCTATTAAAGATATAT  1014
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GTGAAGAAATTCCAGAGGTCACCGGCAAAGAAGTTCCCTTCTCATCATCTTCATCTCAGCTATTAAAGATATAT  1184

Query 1015  ACAGTTGTACAGTTTGCTCTGATGTTGGCATTTTATGAAGAGACCTTTGCAGATACAGCTGCACTGTCGCAAGT  1088
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  ACAGTTGTACAGTTTGCTCTGATGTTGGCATTTTATGAAGAGACCTTTGCAGATACAGCTGCACTGTCGCAAGT  1258

Query 1089  TACTCTCCTTCTGAGGGTTTGCTTCATTATCCTGACCTTGACTTCCATTGGATTTCTTCTGGATCAAAGACCCA  1162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TACTCTCCTTCTGAGGGTTTGCTTCATTATCCTGACCTTGACTTCCATTGGATTTCTTCTGGATCAAAGACCCA  1332

Query 1163  AGGCAGCTATTATGGAAACTCTCCGTTGCTTGATGTTCTTAATGCTGTACCGATTTGGTCACCTGAAGCCTCTT  1236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AGGCAGCTATTATGGAAACTCTCCGTTGCTTGATGTTCTTAATGCTGTACCGATTTGGTCACCTGAAGCCTCTT  1406

Query 1237  GTCCCTTCATTGTCATCTGCTTTTGAGATTGT-TTTTTCCATTTG--CATTG---CTTTCTGGGGAGTTAGAAG  1304
            |||||||||||||||||||||||||||.||.| ||||...||.||  ||..|   |||.|||.||        .
Sbjct 1407  GTCCCTTCATTGTCATCTGCTTTTGAGTTTCTCTTTTAGAATGTGATCACAGAGACTTCCTGAGG--------T  1472

Query 1305  CATGAAACAAC--TCACCT------------CTCACCCTTG------GAAA-----------------------  1335
            |.|||||||.|  |..|||            |||||.||||      ||.|                       
Sbjct 1473  CCTGAAACACCCGTGTCCTATAGCAGTGCTGCTCACACTTGCCTAATGAGAACAATTGCCAAGGGAGGTTGCTA  1546

Query 1336  --------------------------------------------------------------------------  1335
                                                                                      
Sbjct 1547  GATGCATATTCCTGAACCCCAATCCAAACCTAGTAACAGAGCCAAGTTCTTCATTAGCCACGATGCTACTGTTT  1620

Query 1336  --------------------------------------------------------------------------  1335
                                                                                      
Sbjct 1621  CAGAAGATGATGCCATGATCATGAATGCACTAGAGCAATCTGCAGGGAATGTTTTATGGTGATACTTGCATCTG  1694

Query 1336  --------------------------------------------------------------------------  1335
                                                                                      
Sbjct 1695  TGAAGCATTTGTCCTCCAAAAAGAAAGCATGTACTTTAAAGGTTAAATTCTCGTGCCCTGTCCAATGTACAGAA  1768

Query 1336  --------------------------------------------------------------------------  1335
                                                                                      
Sbjct 1769  TATCCTCAAAAACCTACGGGTAATAATCTTTATATCTTCTACTGTGAGCATAATGGAGGTTGACATTGTGAAGT  1842

Query 1336  --------------------------------------------------------------------------  1335
                                                                                      
Sbjct 1843  TTAAGGAAATACGTGAAAGGTGAAAAGTAATTTAAAATAAGGCATTCAGGAAGCAAGTACCTTTTCAAATACTA  1916

Query 1336  --------------------------------------------------------------------------  1335
                                                                                      
Sbjct 1917  TTAGTAGGAAGCAAGTTGAAAATGTTATTACCCTCCTATCATCCCCAAGCCTTGGAAACCGCTAATCTGATTTC  1990

Query 1336  -----------------  1335
                             
Sbjct 1991  TGTGGCTGTATGTTTGC  2007